Wall clock time and date at job start Tue Mar 31 2020 05:49:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39966 * 120.31714 * 2 1 4 4 N 1.31504 * 120.10131 * 179.70420 * 3 2 1 5 5 C 1.33384 * 120.85533 * 0.58615 * 4 3 2 6 6 C 1.40801 * 132.48001 * 179.70320 * 5 4 3 7 7 C 1.46584 * 126.53843 * 359.97438 * 6 5 4 8 8 O 1.21715 * 120.00252 * 324.55429 * 7 6 5 9 9 N 1.34780 * 120.00081 * 144.55463 * 7 6 5 10 10 C 1.46500 * 119.99941 * 4.77640 * 9 7 6 11 11 C 1.46499 * 120.00133 * 184.77220 * 9 7 6 12 12 H 1.09003 * 110.64110 * 1.69083 * 11 9 7 13 13 C 1.55153 * 110.71875 * 125.02428 * 11 9 7 14 14 C 1.54909 * 101.58117 * 153.86728 * 13 11 9 15 15 N 1.47420 * 104.83492 * 322.98920 * 14 13 11 16 16 C 1.36935 * 125.65242 * 204.09438 * 15 14 13 17 17 H 1.07997 * 119.99892 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99775 * 0.04112 * 16 15 14 19 19 N 1.31618 * 119.99892 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99679 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47347 * 59.99812 * 20 18 16 22 22 H 1.48505 * 109.47063 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47240 * 299.99800 * 20 18 16 24 24 C 1.47030 * 108.70128 * 24.12887 * 15 14 13 25 25 C 1.40638 * 106.92523 * 179.97438 * 6 5 4 26 26 N 1.30702 * 108.72476 * 0.02562 * 25 6 5 27 27 N 1.36595 * 120.79730 * 359.69857 * 5 4 3 28 28 C 1.35754 * 120.32629 * 180.28586 * 2 1 3 29 29 H 1.08998 * 109.46532 * 269.71309 * 1 2 3 30 30 H 1.09003 * 109.46775 * 149.72514 * 1 2 3 31 31 H 1.08999 * 109.47371 * 29.72121 * 1 2 3 32 32 H 1.07994 * 119.94961 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47143 * 95.62110 * 10 9 7 34 34 H 1.09001 * 109.47027 * 215.62020 * 10 9 7 35 35 H 1.09003 * 109.46878 * 335.62063 * 10 9 7 36 36 H 1.09002 * 111.00437 * 271.94002 * 13 11 9 37 37 H 1.08998 * 111.00694 * 35.79156 * 13 11 9 38 38 H 1.09004 * 110.36648 * 204.15200 * 14 13 11 39 39 H 1.09005 * 110.46261 * 81.87863 * 14 13 11 40 40 H 0.96999 * 119.99559 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.88186 * 239.52459 * 24 15 14 42 42 H 1.08999 * 109.87982 * 118.35750 * 24 15 14 43 43 H 1.07999 * 125.64004 * 180.02562 * 25 6 5 44 44 H 1.07997 * 120.41782 * 359.97415 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5286 1.2033 0.0059 5 6 4.2084 0.0557 0.0002 6 6 5.5864 -0.2331 -0.0012 7 6 6.6822 0.7405 0.0032 8 8 6.5668 1.7894 -0.6034 9 7 7.8176 0.4742 0.6788 10 6 7.9990 -0.8298 1.3213 11 6 8.8704 1.4888 0.7706 12 1 8.5653 2.4059 0.2666 13 6 9.2361 1.7678 2.2524 14 6 10.6994 2.2599 2.1243 15 7 11.2811 1.4380 1.0476 16 6 12.6131 1.1679 0.8806 17 1 12.9400 0.5523 0.0556 18 6 13.5432 1.6851 1.7719 19 7 13.1447 2.4347 2.7777 20 14 15.3603 1.3173 1.5436 21 1 15.8067 1.8281 0.2227 22 1 16.1387 1.9809 2.6203 23 1 15.5802 -0.1500 1.6070 24 6 10.1942 0.9568 0.1821 25 6 5.7111 -1.6340 -0.0076 26 7 4.5154 -2.1616 -0.0105 27 7 3.5553 -1.1440 -0.0057 28 6 2.1925 -1.1718 -0.0058 29 1 -0.3632 -0.0051 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3634 0.8924 -0.5095 32 1 1.6779 2.1460 0.0004 33 1 8.5593 -1.4875 0.6568 34 1 8.5484 -0.7020 2.2540 35 1 7.0242 -1.2701 1.5311 36 1 8.5979 2.5451 2.6726 37 1 9.1813 0.8558 2.8468 38 1 11.2374 2.0975 3.0583 39 1 10.7241 3.3150 1.8516 40 1 13.7946 2.7964 3.4002 41 1 10.1837 -0.1330 0.1715 42 1 10.3298 1.3382 -0.8299 43 1 6.6412 -2.1830 -0.0097 44 1 1.6647 -2.1140 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033470952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:40 Heat of formation + Delta-G solvation = 132.851528 kcal Electronic energy + Delta-G solvation = -27699.555635 eV Core-core repulsion = 23848.923057 eV Total energy + Delta-G solvation = -3850.632578 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.79477 -39.70062 -38.52251 -37.09581 -34.70481 -34.69558 -33.06082 -32.01580 -30.07977 -29.13241 -27.90814 -27.04237 -26.52929 -25.21325 -24.53135 -23.30255 -22.25631 -20.53725 -20.14241 -19.10950 -18.39302 -17.53104 -17.13102 -16.89460 -16.51747 -15.91204 -15.48655 -14.76787 -14.64495 -14.42620 -14.14439 -14.10827 -13.96408 -13.71187 -13.39749 -12.96196 -12.88380 -12.85321 -12.75408 -12.30609 -11.93430 -11.79891 -11.72578 -11.49123 -11.25818 -10.98875 -10.75585 -10.73913 -10.33182 -10.15914 -10.10846 -9.79738 -9.75298 -9.53622 -9.47287 -8.61293 -8.31089 -8.10757 -6.79566 -5.61186 -3.03203 0.05383 0.39682 1.58887 1.96175 2.82458 3.15174 3.43490 3.46278 3.47250 3.48690 3.51257 3.74925 3.89778 4.19162 4.37661 4.53497 4.75634 4.78267 4.92476 4.96013 5.09740 5.21790 5.28928 5.34243 5.47067 5.50545 5.57882 5.62242 5.69288 5.80565 5.82894 5.87598 6.01721 6.07951 6.31918 6.47698 6.64969 6.68156 6.79898 6.97702 7.11973 7.26628 7.55449 7.66008 7.75413 7.89334 8.39122 8.54585 9.25654 9.86361 10.51288 11.42455 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.034763 B = 0.002405 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.264477 B =11639.473965 C =12023.243831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.190 4.190 3 C 0.187 3.813 4 N -0.441 5.441 5 C 0.307 3.693 6 C -0.273 4.273 7 C 0.596 3.404 8 O -0.533 6.533 9 N -0.597 5.597 10 C 0.067 3.933 11 C 0.130 3.870 12 H 0.104 0.896 13 C -0.153 4.153 14 C 0.154 3.846 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.923 5.923 20 Si 0.915 3.085 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.130 3.870 25 C 0.124 3.876 26 N -0.312 5.312 27 N -0.305 5.305 28 C 0.159 3.841 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.183 0.817 33 H 0.059 0.941 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.109 0.891 39 H 0.015 0.985 40 H 0.252 0.748 41 H 0.028 0.972 42 H 0.025 0.975 43 H 0.210 0.790 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.724 -8.831 -2.694 29.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.196 4.196 3 C 0.003 3.997 4 N -0.150 5.150 5 C 0.076 3.924 6 C -0.290 4.290 7 C 0.383 3.617 8 O -0.410 6.410 9 N -0.329 5.329 10 C -0.077 4.077 11 C 0.027 3.973 12 H 0.122 0.878 13 C -0.192 4.192 14 C 0.028 3.972 15 N -0.329 5.329 16 C -0.349 4.349 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C 0.003 3.997 25 C -0.057 4.057 26 N -0.135 5.135 27 N -0.073 5.073 28 C 0.023 3.977 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.200 0.800 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.033 0.967 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.043 0.957 43 H 0.227 0.773 44 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -27.426 -8.702 -2.917 28.921 hybrid contribution 0.940 -0.313 -0.134 1.000 sum -26.486 -9.015 -3.051 28.144 Atomic orbital electron populations 1.20618 0.87398 1.04083 1.03398 1.20598 0.99177 0.92327 1.07530 1.23585 0.88899 0.98612 0.88595 1.68290 1.08642 1.24112 1.14003 1.20313 0.93006 0.81248 0.97830 1.19451 0.90245 0.93874 1.25404 1.16790 0.80846 0.85245 0.78770 1.90805 1.80716 1.26217 1.43256 1.47602 1.16970 1.15689 1.52644 1.22083 1.01772 0.84735 0.99067 1.22219 0.86183 0.90969 0.97903 0.87828 1.23393 1.00482 1.00852 0.94499 1.21933 0.87077 0.92430 0.95713 1.44436 1.01548 1.58347 1.28583 1.19025 0.80758 1.25929 1.09156 0.90534 1.24790 0.98195 0.99940 0.97807 1.69778 1.32101 1.38394 1.16889 0.86140 0.84560 0.77649 0.77066 1.21230 1.21605 1.21202 1.21524 0.87315 0.96861 0.94045 1.24420 0.96617 0.92331 0.92285 1.77609 0.96265 1.08236 1.31351 1.46987 1.06061 1.07892 1.46365 1.21938 0.79369 1.01234 0.95112 0.90217 0.90741 0.90074 0.79975 0.92214 0.90279 0.91020 0.92087 0.91644 0.87336 0.96725 0.93683 0.95424 0.95693 0.77339 0.80143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.16 10.03 36.01 0.36 0.20 16 2 C -0.19 -1.07 5.86 -104.86 -0.61 -1.68 16 3 C 0.19 1.50 10.97 -17.05 -0.19 1.31 16 4 N -0.44 -5.96 10.47 -12.00 -0.13 -6.09 16 5 C 0.31 4.40 7.85 -155.83 -1.22 3.17 16 6 C -0.27 -4.15 5.49 -104.66 -0.58 -4.72 16 7 C 0.60 10.77 7.57 -12.89 -0.10 10.67 16 8 O -0.53 -11.60 16.45 5.18 0.09 -11.52 16 9 N -0.60 -10.13 2.88 -173.41 -0.50 -10.63 16 10 C 0.07 0.88 8.16 59.85 0.49 1.36 16 11 C 0.13 2.59 3.36 -66.10 -0.22 2.36 16 12 H 0.10 2.23 7.01 -51.93 -0.36 1.87 16 13 C -0.15 -3.06 6.62 -24.58 -0.16 -3.22 16 14 C 0.15 3.83 5.89 -2.53 -0.01 3.81 16 15 N -0.60 -15.80 3.39 -170.07 -0.58 -16.38 16 16 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 17 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 18 C -0.01 -0.34 5.49 -17.43 -0.10 -0.44 16 19 N -0.92 -27.13 10.09 55.49 0.56 -26.57 16 20 Si 0.92 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 24 C 0.13 2.87 6.88 -3.06 -0.02 2.84 16 25 C 0.12 1.48 9.51 -17.13 -0.16 1.32 16 26 N -0.31 -3.78 12.58 30.76 0.39 -3.40 16 27 N -0.30 -3.53 3.86 -11.97 -0.05 -3.58 16 28 C 0.16 1.15 10.94 -16.45 -0.18 0.97 16 29 H 0.08 0.08 8.14 -51.93 -0.42 -0.35 16 30 H 0.07 0.05 8.09 -51.93 -0.42 -0.37 16 31 H 0.08 0.06 8.10 -51.93 -0.42 -0.36 16 32 H 0.18 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.06 0.70 7.40 -51.93 -0.38 0.32 16 34 H 0.08 1.09 6.08 -51.93 -0.32 0.78 16 35 H 0.07 0.79 4.84 -51.93 -0.25 0.54 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.24 6.07 -51.93 -0.32 0.92 16 38 H 0.11 2.98 5.87 -51.93 -0.30 2.68 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.03 0.58 6.80 -51.93 -0.35 0.23 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.21 1.86 6.34 -52.49 -0.33 1.53 16 44 H 0.18 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 356.89 15.07 5.38 5.38 Total: -1.00 -37.54 356.89 -8.27 -45.80 By element: Atomic # 1 Polarization: 3.68 SS G_CDS: -5.54 Total: -1.86 kcal Atomic # 6 Polarization: 14.44 SS G_CDS: -2.86 Total: 11.58 kcal Atomic # 7 Polarization: -66.34 SS G_CDS: -0.30 Total: -66.64 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.54 -8.27 -45.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033470952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.655 kcal (2) G-P(sol) polarization free energy of solvation -37.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 141.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 132.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds