Wall clock time and date at job start Tue Mar 31 2020 05:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39966 * 120.31714 * 2 1 4 4 N 1.31504 * 120.10131 * 179.70420 * 3 2 1 5 5 C 1.33384 * 120.85533 * 0.58615 * 4 3 2 6 6 C 1.40801 * 132.48001 * 179.70320 * 5 4 3 7 7 C 1.46584 * 126.53843 * 359.97438 * 6 5 4 8 8 O 1.21715 * 120.00252 * 324.55429 * 7 6 5 9 9 N 1.34780 * 120.00081 * 144.55463 * 7 6 5 10 10 C 1.46500 * 119.99941 * 4.77640 * 9 7 6 11 11 C 1.46499 * 120.00133 * 184.77220 * 9 7 6 12 12 H 1.09003 * 110.64110 * 1.69083 * 11 9 7 13 13 C 1.55153 * 110.71875 * 125.02428 * 11 9 7 14 14 C 1.54909 * 101.58117 * 153.86728 * 13 11 9 15 15 N 1.47420 * 104.83492 * 322.98920 * 14 13 11 16 16 C 1.36935 * 125.65242 * 204.09438 * 15 14 13 17 17 H 1.07997 * 119.99892 * 180.02562 * 16 15 14 18 18 C 1.38815 * 119.99775 * 0.04112 * 16 15 14 19 19 N 1.31618 * 119.99892 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99679 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47347 * 59.99812 * 20 18 16 22 22 H 1.48505 * 109.47063 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47240 * 299.99800 * 20 18 16 24 24 C 1.47030 * 108.70128 * 24.12887 * 15 14 13 25 25 C 1.40638 * 106.92523 * 179.97438 * 6 5 4 26 26 N 1.30702 * 108.72476 * 0.02562 * 25 6 5 27 27 N 1.36595 * 120.79730 * 359.69857 * 5 4 3 28 28 C 1.35754 * 120.32629 * 180.28586 * 2 1 3 29 29 H 1.08998 * 109.46532 * 269.71309 * 1 2 3 30 30 H 1.09003 * 109.46775 * 149.72514 * 1 2 3 31 31 H 1.08999 * 109.47371 * 29.72121 * 1 2 3 32 32 H 1.07994 * 119.94961 * 0.02562 * 3 2 1 33 33 H 1.08998 * 109.47143 * 95.62110 * 10 9 7 34 34 H 1.09001 * 109.47027 * 215.62020 * 10 9 7 35 35 H 1.09003 * 109.46878 * 335.62063 * 10 9 7 36 36 H 1.09002 * 111.00437 * 271.94002 * 13 11 9 37 37 H 1.08998 * 111.00694 * 35.79156 * 13 11 9 38 38 H 1.09004 * 110.36648 * 204.15200 * 14 13 11 39 39 H 1.09005 * 110.46261 * 81.87863 * 14 13 11 40 40 H 0.96999 * 119.99559 * 180.02562 * 19 18 16 41 41 H 1.08996 * 109.88186 * 239.52459 * 24 15 14 42 42 H 1.08999 * 109.87982 * 118.35750 * 24 15 14 43 43 H 1.07999 * 125.64004 * 180.02562 * 25 6 5 44 44 H 1.07997 * 120.41782 * 359.97415 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2136 1.2082 0.0000 4 7 3.5286 1.2033 0.0059 5 6 4.2084 0.0557 0.0002 6 6 5.5864 -0.2331 -0.0012 7 6 6.6822 0.7405 0.0032 8 8 6.5668 1.7894 -0.6034 9 7 7.8176 0.4742 0.6788 10 6 7.9990 -0.8298 1.3213 11 6 8.8704 1.4888 0.7706 12 1 8.5653 2.4059 0.2666 13 6 9.2361 1.7678 2.2524 14 6 10.6994 2.2599 2.1243 15 7 11.2811 1.4380 1.0476 16 6 12.6131 1.1679 0.8806 17 1 12.9400 0.5523 0.0556 18 6 13.5432 1.6851 1.7719 19 7 13.1447 2.4347 2.7777 20 14 15.3603 1.3173 1.5436 21 1 15.8067 1.8281 0.2227 22 1 16.1387 1.9809 2.6203 23 1 15.5802 -0.1500 1.6070 24 6 10.1942 0.9568 0.1821 25 6 5.7111 -1.6340 -0.0076 26 7 4.5154 -2.1616 -0.0105 27 7 3.5553 -1.1440 -0.0057 28 6 2.1925 -1.1718 -0.0058 29 1 -0.3632 -0.0051 1.0277 30 1 -0.3633 -0.8875 -0.5181 31 1 -0.3634 0.8924 -0.5095 32 1 1.6779 2.1460 0.0004 33 1 8.5593 -1.4875 0.6568 34 1 8.5484 -0.7020 2.2540 35 1 7.0242 -1.2701 1.5311 36 1 8.5979 2.5451 2.6726 37 1 9.1813 0.8558 2.8468 38 1 11.2374 2.0975 3.0583 39 1 10.7241 3.3150 1.8516 40 1 13.7946 2.7964 3.4002 41 1 10.1837 -0.1330 0.1715 42 1 10.3298 1.3382 -0.8299 43 1 6.6412 -2.1830 -0.0097 44 1 1.6647 -2.1140 -0.0101 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033470952.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:49:39 Heat of formation + Delta-G solvation = 107.161126 kcal Electronic energy + Delta-G solvation = -27700.669654 eV Core-core repulsion = 23848.923057 eV Total energy + Delta-G solvation = -3851.746598 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -43.60811 -41.02575 -39.41660 -38.76107 -36.24422 -35.43348 -34.20603 -33.50052 -31.35582 -30.72198 -29.27823 -27.88539 -27.82070 -26.46281 -25.86266 -24.35567 -23.07968 -22.13061 -21.80507 -20.37921 -19.39387 -18.94782 -18.43567 -18.08550 -17.44004 -17.24250 -16.67611 -16.35024 -15.98855 -15.83793 -15.43560 -15.02483 -14.90228 -14.48702 -14.42632 -14.35785 -13.96431 -13.83860 -13.59638 -13.47504 -13.35665 -13.08324 -12.99115 -12.94900 -12.68696 -12.65448 -12.39520 -12.16428 -12.05492 -11.99621 -11.80481 -11.37923 -10.95893 -10.87220 -10.73184 -10.49032 -9.65139 -9.07470 -8.90816 -7.76253 -5.22161 -0.64687 -0.30845 0.84868 1.00140 1.48302 1.52097 1.58320 1.82604 2.01891 2.38986 2.52392 2.76167 2.91884 3.33631 3.40172 3.65487 3.73022 3.76533 3.84070 3.91719 3.97517 4.12341 4.21976 4.24152 4.31121 4.38880 4.55101 4.63036 4.67891 4.84267 4.85227 4.92742 4.94056 4.99689 5.04334 5.05543 5.10371 5.25348 5.41315 5.46207 5.56688 5.61832 5.77654 6.14477 6.29129 6.43150 6.53473 7.09946 7.20675 7.75887 8.40476 9.25548 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.034763 B = 0.002405 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.264477 B =11639.473965 C =12023.243831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.169 4.169 3 C 0.193 3.807 4 N -0.501 5.501 5 C 0.298 3.702 6 C -0.320 4.320 7 C 0.596 3.404 8 O -0.585 6.585 9 N -0.595 5.595 10 C 0.063 3.937 11 C 0.145 3.855 12 H 0.081 0.919 13 C -0.133 4.133 14 C 0.158 3.842 15 N -0.621 5.621 16 C -0.239 4.239 17 H 0.082 0.918 18 C -0.067 4.067 19 N -0.949 5.949 20 Si 0.984 3.016 21 H -0.281 1.281 22 H -0.293 1.293 23 H -0.273 1.273 24 C 0.132 3.868 25 C 0.137 3.863 26 N -0.322 5.322 27 N -0.306 5.306 28 C 0.147 3.853 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.217 0.783 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.083 0.917 39 H -0.015 1.015 40 H 0.248 0.752 41 H 0.046 0.954 42 H 0.013 0.987 43 H 0.235 0.765 44 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.610 -11.136 -2.738 32.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.174 4.174 3 C 0.013 3.987 4 N -0.213 5.213 5 C 0.064 3.936 6 C -0.336 4.336 7 C 0.387 3.613 8 O -0.466 6.466 9 N -0.326 5.326 10 C -0.078 4.078 11 C 0.040 3.960 12 H 0.099 0.901 13 C -0.172 4.172 14 C 0.033 3.967 15 N -0.348 5.348 16 C -0.368 4.368 17 H 0.100 0.900 18 C -0.259 4.259 19 N -0.599 5.599 20 Si 0.812 3.188 21 H -0.208 1.208 22 H -0.219 1.219 23 H -0.199 1.199 24 C 0.006 3.994 25 C -0.044 4.044 26 N -0.144 5.144 27 N -0.073 5.073 28 C 0.012 3.988 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.234 0.766 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.114 0.886 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.003 0.997 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.031 0.969 43 H 0.251 0.749 44 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -30.383 -11.060 -2.962 32.469 hybrid contribution 1.539 0.449 -0.160 1.611 sum -28.844 -10.610 -3.122 30.892 Atomic orbital electron populations 1.20788 0.83814 1.05795 1.04795 1.21088 1.01193 0.90786 1.04361 1.24397 0.87637 1.01239 0.85396 1.68322 1.11166 1.24485 1.17306 1.20400 0.93262 0.82416 0.97481 1.19200 0.89928 0.94494 1.30022 1.17223 0.81328 0.85110 0.77653 1.90756 1.81632 1.28626 1.45536 1.47572 1.15978 1.16317 1.52759 1.22327 1.03519 0.83123 0.98880 1.21760 0.86069 0.91113 0.97037 0.90119 1.23189 0.97199 1.01803 0.95051 1.21705 0.89793 0.90996 0.94226 1.44701 1.01978 1.58509 1.29594 1.19409 0.82010 1.26038 1.09360 0.90037 1.25667 1.02540 1.00019 0.97665 1.70021 1.33116 1.39220 1.17520 0.85072 0.79088 0.77897 0.76758 1.20768 1.21889 1.19859 1.21585 0.87335 0.97662 0.92866 1.24694 0.97579 0.91031 0.91070 1.77537 0.96331 1.08510 1.32008 1.47186 1.07353 1.06868 1.45908 1.22868 0.77865 1.03595 0.94440 0.88712 0.88917 0.88562 0.76635 0.90378 0.90686 0.88561 0.90794 0.89897 0.89870 0.99720 0.94187 0.93612 0.96949 0.74931 0.76398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.15 10.03 71.24 0.71 0.86 16 2 C -0.17 -1.31 5.86 -20.02 -0.12 -1.43 16 3 C 0.19 2.69 10.97 85.16 0.93 3.63 16 4 N -0.50 -13.46 10.47 -191.88 -2.01 -15.47 16 5 C 0.30 8.47 7.85 133.98 1.05 9.52 16 6 C -0.32 -9.75 5.49 -19.89 -0.11 -9.86 16 7 C 0.60 22.22 7.57 86.42 0.65 22.88 16 8 O -0.58 -26.88 16.45 -4.40 -0.07 -26.95 16 9 N -0.60 -20.34 2.88 -820.74 -2.37 -22.70 16 10 C 0.06 1.57 8.16 127.77 1.04 2.62 16 11 C 0.14 5.91 3.36 46.18 0.16 6.06 16 12 H 0.08 3.68 7.01 -2.39 -0.02 3.66 16 13 C -0.13 -5.42 6.62 31.98 0.21 -5.21 16 14 C 0.16 8.20 5.89 86.86 0.51 8.71 16 15 N -0.62 -33.44 3.39 -691.97 -2.35 -35.79 16 16 C -0.24 -13.74 10.27 84.03 0.86 -12.88 16 17 H 0.08 4.47 7.83 -2.91 -0.02 4.45 16 18 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 19 N -0.95 -57.35 10.09 21.65 0.22 -57.13 16 20 Si 0.98 46.22 29.55 68.60 2.03 48.25 16 21 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 C 0.13 5.95 6.88 86.73 0.60 6.54 16 25 C 0.14 3.13 9.51 85.45 0.81 3.94 16 26 N -0.32 -7.26 12.58 -56.58 -0.71 -7.98 16 27 N -0.31 -6.59 3.86 -191.80 -0.74 -7.33 16 28 C 0.15 1.65 10.94 83.42 0.91 2.57 16 29 H 0.09 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.09 -0.38 8.09 -2.39 -0.02 -0.40 16 31 H 0.10 -0.35 8.10 -2.39 -0.02 -0.36 16 32 H 0.22 1.20 8.06 -2.91 -0.02 1.17 16 33 H 0.08 1.67 7.40 -2.39 -0.02 1.65 16 34 H 0.07 1.95 6.08 -2.39 -0.01 1.94 16 35 H 0.10 1.96 4.84 -2.39 -0.01 1.94 16 36 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 37 H 0.08 3.09 6.07 -2.39 -0.01 3.08 16 38 H 0.08 4.76 5.87 -2.38 -0.01 4.75 16 39 H -0.02 -0.86 8.14 -2.38 -0.02 -0.88 16 40 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 41 H 0.05 1.91 6.80 -2.39 -0.02 1.89 16 42 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.23 3.69 6.34 -2.91 -0.02 3.67 16 44 H 0.22 0.63 8.06 -2.91 -0.02 0.60 16 Total: -1.00 -87.03 356.89 3.74 -83.29 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 1.04 Total: 7.23 kcal Atomic # 6 Polarization: 25.88 SS G_CDS: 8.70 Total: 34.58 kcal Atomic # 7 Polarization: -138.44 SS G_CDS: -7.96 Total: -146.40 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.07 Total: -26.95 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -87.03 3.74 -83.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033470952.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.453 kcal (2) G-P(sol) polarization free energy of solvation -87.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds