Wall clock time and date at job start Tue Mar 31 2020 05:43:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.39962 * 119.94464 * 2 1 4 4 C 1.35757 * 119.35529 * 179.97438 * 3 2 1 5 5 C 1.50705 * 120.42047 * 180.02562 * 4 3 2 6 6 N 1.36315 * 119.15848 * 359.97438 * 4 3 2 7 7 N 1.39904 * 132.16690 * 180.02562 * 6 4 3 8 8 C 1.30691 * 109.52111 * 179.66366 * 7 6 4 9 9 C 1.40643 * 108.72539 * 0.45463 * 8 7 6 10 10 C 1.46589 * 126.53544 * 179.80960 * 9 8 7 11 11 O 1.21719 * 119.99645 * 179.68795 * 10 9 8 12 12 N 1.34775 * 120.00047 * 359.69566 * 10 9 8 13 13 C 1.46504 * 119.99531 * 179.97438 * 12 10 9 14 14 C 1.53006 * 109.46883 * 179.97438 * 13 12 10 15 15 H 1.09006 * 112.73647 * 56.24362 * 14 13 12 16 16 C 1.53490 * 113.46857 * 187.05997 * 14 13 12 17 17 C 1.53498 * 83.34353 * 140.84837 * 16 14 13 18 18 N 1.47061 * 87.98682 * 333.93377 * 17 16 14 19 19 C 1.36934 * 136.06044 * 207.15361 * 18 17 16 20 20 H 1.07995 * 120.00339 * 179.97438 * 19 18 17 21 21 C 1.38816 * 119.99897 * 359.95237 * 19 18 17 22 22 N 1.31625 * 119.99772 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00304 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47186 * 59.99145 * 23 21 19 25 25 H 1.48498 * 109.47368 * 179.97438 * 23 21 19 26 26 H 1.48505 * 109.46877 * 299.99544 * 23 21 19 27 27 C 1.36599 * 119.72605 * 359.97438 * 6 4 3 28 28 N 1.31504 * 119.94820 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47283 * 270.02072 * 1 2 3 30 30 H 1.08998 * 109.46955 * 30.03018 * 1 2 3 31 31 H 1.09009 * 109.46729 * 150.02620 * 1 2 3 32 32 H 1.08001 * 120.32640 * 0.02562 * 3 2 1 33 33 H 1.09002 * 109.46959 * 90.00095 * 5 4 3 34 34 H 1.09002 * 109.46626 * 209.99522 * 5 4 3 35 35 H 1.08997 * 109.47306 * 329.99938 * 5 4 3 36 36 H 1.08007 * 125.63657 * 180.30067 * 8 7 6 37 37 H 0.96992 * 120.00503 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.46891 * 60.00097 * 13 12 10 39 39 H 1.08993 * 109.47378 * 299.99469 * 13 12 10 40 40 H 1.08997 * 114.20853 * 254.43989 * 16 14 13 41 41 H 1.09005 * 114.20667 * 27.26359 * 16 14 13 42 42 H 1.09003 * 113.46837 * 219.14929 * 17 16 14 43 43 H 1.08998 * 113.46410 * 88.71492 * 17 16 14 44 44 H 0.97002 * 119.99961 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.2128 0.0000 4 6 3.5631 1.1988 0.0005 5 6 4.3395 2.4905 0.0011 6 7 4.2150 0.0016 0.0016 7 7 5.5748 -0.3273 0.0028 8 6 5.7097 -1.6272 0.0107 9 6 4.4315 -2.2138 0.0045 10 6 4.1296 -3.6482 0.0061 11 8 2.9727 -4.0266 0.0059 12 7 5.1329 -4.5481 0.0079 13 6 4.8311 -5.9817 0.0100 14 6 6.1376 -6.7779 0.0111 15 1 6.7881 -6.5189 0.8466 16 6 5.9325 -8.2894 -0.1597 17 6 7.1870 -8.1798 -1.0373 18 7 6.8253 -6.7768 -1.2888 19 6 7.0356 -5.8690 -2.2922 20 1 6.6376 -4.8686 -2.2075 21 6 7.7606 -6.2345 -3.4181 22 7 8.2465 -7.4535 -3.5210 23 14 8.0481 -4.9960 -4.7867 24 1 8.7871 -3.8259 -4.2482 25 1 8.8448 -5.6292 -5.8681 26 1 6.7412 -4.5481 -5.3315 27 6 3.4971 -1.1605 0.0026 28 7 2.1635 -1.1395 0.0005 29 1 -0.3633 0.0004 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8903 -0.5135 32 1 1.6701 2.1506 0.0004 33 1 4.5263 2.8016 1.0290 34 1 5.2897 2.3434 -0.5123 35 1 3.7642 3.2605 -0.5128 36 1 6.6477 -2.1625 0.0181 37 1 6.0548 -4.2466 0.0078 38 1 4.2538 -6.2327 -0.8798 39 1 4.2532 -6.2300 0.9001 40 1 6.0752 -8.8659 0.7542 41 1 5.0278 -8.5589 -0.7049 42 1 7.1486 -8.8048 -1.9295 43 1 8.1172 -8.2953 -0.4810 44 1 8.7534 -7.7088 -4.3075 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038593791.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:48 Heat of formation + Delta-G solvation = 137.651452 kcal Electronic energy + Delta-G solvation = -27635.802725 eV Core-core repulsion = 23785.378287 eV Total energy + Delta-G solvation = -3850.424438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.62325 -39.20691 -38.43449 -37.76392 -35.27835 -33.83606 -32.45802 -32.15515 -30.63227 -28.94634 -28.09874 -27.95123 -27.27835 -23.86198 -23.41694 -22.91462 -21.99477 -21.49568 -19.77332 -19.13581 -18.55747 -17.36783 -16.98164 -16.53656 -16.29283 -15.44602 -15.14250 -15.04127 -14.37304 -14.28908 -14.09614 -14.00764 -13.80704 -13.66731 -13.52888 -13.33576 -13.03679 -12.79513 -12.72693 -12.51276 -12.02542 -11.81015 -11.60499 -11.46661 -11.05020 -10.99654 -10.88225 -10.72112 -10.53449 -9.97167 -9.90723 -9.78910 -9.68220 -9.47114 -9.10647 -8.76612 -8.42960 -7.97516 -6.85148 -5.72737 -3.04764 0.20098 0.58406 1.73507 2.13323 2.99787 3.41086 3.46406 3.46701 3.52013 3.56509 3.80517 3.90159 4.04515 4.46904 4.47886 4.71799 4.78867 4.86096 4.91923 4.99702 5.11715 5.20967 5.23300 5.26291 5.38385 5.45296 5.57571 5.58094 5.66811 5.85106 5.88790 5.99767 6.10281 6.22221 6.28746 6.42889 6.48352 6.66219 6.82089 7.07816 7.17413 7.28054 7.45514 7.51283 7.62422 8.02090 8.13509 8.84597 9.07564 9.74667 10.67936 11.44563 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013807 B = 0.003323 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.427860 B = 8423.630410 C = 9513.547723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.207 3.793 3 C -0.230 4.230 4 C 0.198 3.802 5 C -0.118 4.118 6 N -0.311 5.311 7 N -0.313 5.313 8 C 0.132 3.868 9 C -0.282 4.282 10 C 0.592 3.408 11 O -0.541 6.541 12 N -0.713 5.713 13 C 0.126 3.874 14 C 0.128 3.872 15 H 0.048 0.952 16 C -0.161 4.161 17 C 0.152 3.848 18 N -0.601 5.601 19 C -0.212 4.212 20 H 0.080 0.920 21 C -0.007 4.007 22 N -0.919 5.919 23 Si 0.906 3.094 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.285 1.285 27 C 0.324 3.676 28 N -0.446 5.446 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.167 0.833 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.207 0.793 37 H 0.398 0.602 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.024 0.976 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.019 18.837 10.402 24.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.045 3.955 3 C -0.254 4.254 4 C 0.081 3.919 5 C -0.175 4.175 6 N -0.081 5.081 7 N -0.135 5.135 8 C -0.049 4.049 9 C -0.298 4.298 10 C 0.378 3.622 11 O -0.419 6.419 12 N -0.363 5.363 13 C 0.002 3.998 14 C 0.020 3.980 15 H 0.066 0.934 16 C -0.200 4.200 17 C 0.026 3.974 18 N -0.327 5.327 19 C -0.339 4.339 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.566 5.566 23 Si 0.737 3.263 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.212 1.212 27 C 0.093 3.907 28 N -0.159 5.159 29 H 0.109 0.891 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.185 0.815 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.113 0.887 36 H 0.223 0.777 37 H 0.233 0.767 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.042 0.958 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -11.248 18.813 10.044 24.111 hybrid contribution 0.932 0.843 -0.826 1.504 sum -10.316 19.656 9.218 24.037 Atomic orbital electron populations 1.20833 0.86802 1.04649 1.04137 1.22083 0.98180 0.87297 0.87905 1.21549 0.91537 1.01322 1.10947 1.20795 0.91996 0.86356 0.92765 1.21006 1.01104 0.90709 1.04720 1.47023 1.07806 1.05888 1.47400 1.77523 0.88707 1.15907 1.31355 1.24240 0.98569 0.90568 0.91564 1.19558 0.90392 0.93565 1.26315 1.16731 0.85272 0.83530 0.76651 1.90797 1.19757 1.80572 1.50786 1.45675 1.08891 1.06708 1.75068 1.21748 0.98286 0.78525 1.01260 1.22422 0.91517 0.93455 0.90632 0.93444 1.23659 1.01253 0.95223 0.99891 1.22024 0.91920 0.87258 0.96201 1.45653 1.61850 1.10729 1.14478 1.18819 1.28387 0.92387 0.94300 0.90189 1.24750 1.00515 0.96797 0.98298 1.69819 1.40329 1.17323 1.29178 0.86287 0.77797 0.80285 0.81951 1.21212 1.21577 1.21188 1.20350 0.87815 0.86029 0.96530 1.68165 1.03701 1.28109 1.15882 0.89098 0.89673 0.89213 0.81516 0.88782 0.89087 0.88660 0.77677 0.76738 0.91184 0.92359 0.92386 0.90198 0.91043 0.95785 0.93699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.19 36.01 0.37 -0.35 16 2 C 0.21 2.23 6.83 -82.09 -0.56 1.67 16 3 C -0.23 -1.83 9.38 -39.82 -0.37 -2.21 16 4 C 0.20 1.96 6.85 -81.49 -0.56 1.40 16 5 C -0.12 -0.71 10.08 36.01 0.36 -0.34 16 6 N -0.31 -4.41 3.86 -8.26 -0.03 -4.44 16 7 N -0.31 -4.60 12.39 30.76 0.38 -4.21 16 8 C 0.13 1.95 11.44 -17.13 -0.20 1.76 16 9 C -0.28 -4.96 6.17 -104.66 -0.65 -5.61 16 10 C 0.59 11.73 7.78 -12.89 -0.10 11.63 16 11 O -0.54 -12.44 16.74 5.17 0.09 -12.36 16 12 N -0.71 -13.19 5.32 -61.64 -0.33 -13.52 16 13 C 0.13 2.43 5.52 -4.04 -0.02 2.40 16 14 C 0.13 2.51 4.10 -72.40 -0.30 2.22 16 15 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 16 C -0.16 -3.01 8.03 -26.22 -0.21 -3.22 16 17 C 0.15 3.52 7.39 -8.52 -0.06 3.45 16 18 N -0.60 -14.85 3.65 -177.02 -0.65 -15.50 16 19 C -0.21 -5.75 10.55 -15.06 -0.16 -5.91 16 20 H 0.08 2.09 7.50 -52.49 -0.39 1.70 16 21 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 22 N -0.92 -27.29 11.51 55.49 0.64 -26.65 16 23 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 C 0.32 5.46 7.74 -155.83 -1.21 4.26 16 28 N -0.45 -7.10 10.18 -8.25 -0.08 -7.19 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.31 8.09 -51.93 -0.42 -0.11 16 31 H 0.09 0.72 8.14 -51.92 -0.42 0.30 16 32 H 0.17 0.57 8.06 -52.49 -0.42 0.14 16 33 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 35 H 0.09 0.29 8.09 -51.93 -0.42 -0.13 16 36 H 0.21 2.41 7.46 -52.48 -0.39 2.02 16 37 H 0.40 6.80 7.29 -40.82 -0.30 6.50 16 38 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 1.49 8.12 -51.93 -0.42 1.07 16 42 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -37.66 375.38 -9.18 -46.84 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.08 Total: 3.12 kcal Atomic # 6 Polarization: 14.61 SS G_CDS: -3.76 Total: 10.85 kcal Atomic # 7 Polarization: -71.44 SS G_CDS: -0.07 Total: -71.51 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.09 Total: -12.36 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.66 -9.18 -46.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038593791.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 184.495 kcal (2) G-P(sol) polarization free energy of solvation -37.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 146.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds