Wall clock time and date at job start Tue Mar 31 2020 05:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39966 * 119.94273 * 2 1 4 4 C 1.35755 * 119.35008 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.42273 * 180.02562 * 4 3 2 6 6 N 1.36322 * 119.15681 * 0.02562 * 4 3 2 7 7 N 1.39905 * 132.15597 * 179.97438 * 6 4 3 8 8 C 1.30704 * 109.51274 * 180.02562 * 7 6 4 9 9 C 1.40637 * 108.72855 * 0.02562 * 8 7 6 10 10 C 1.46591 * 126.53742 * 179.97438 * 9 8 7 11 11 O 1.21715 * 119.99977 * 180.02562 * 10 9 8 12 12 N 1.34771 * 119.99644 * 0.02650 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.96693 * 306.67860 * 14 13 12 16 16 C 1.53944 * 113.77224 * 175.00107 * 14 13 12 17 17 C 1.53950 * 86.29079 * 222.09231 * 16 14 13 18 18 N 1.47585 * 113.77049 * 78.49995 * 14 13 12 19 19 C 1.36932 * 134.49495 * 318.94949 * 18 14 13 20 20 H 1.08007 * 119.99670 * 359.97438 * 19 18 14 21 21 C 1.38814 * 120.00453 * 179.97438 * 19 18 14 22 22 N 1.31623 * 119.99581 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00371 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46974 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47039 * 119.99851 * 23 21 19 26 26 H 1.48494 * 109.47110 * 240.00230 * 23 21 19 27 27 C 1.36596 * 119.72993 * 0.27310 * 6 4 3 28 28 N 1.31497 * 119.94432 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47161 * 89.99882 * 1 2 3 30 30 H 1.08995 * 109.47209 * 209.99807 * 1 2 3 31 31 H 1.08998 * 109.47028 * 329.99953 * 1 2 3 32 32 H 1.08000 * 120.32594 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47569 * 269.97985 * 5 4 3 34 34 H 1.09007 * 109.46748 * 29.98130 * 5 4 3 35 35 H 1.08999 * 109.46903 * 149.97708 * 5 4 3 36 36 H 1.07998 * 125.62937 * 179.97438 * 8 7 6 37 37 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 39 39 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 40 40 H 1.09005 * 113.73705 * 336.43429 * 16 14 13 41 41 H 1.08994 * 113.74699 * 107.63859 * 16 14 13 42 42 H 1.08997 * 113.77044 * 137.90682 * 17 16 14 43 43 H 1.08997 * 113.76603 * 269.19409 * 17 16 14 44 44 H 0.97001 * 120.00214 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.2128 0.0000 4 6 3.5631 1.1988 -0.0005 5 6 4.3396 2.4903 0.0000 6 7 4.2149 0.0015 -0.0016 7 7 5.5748 -0.3273 -0.0028 8 6 5.7096 -1.6273 -0.0040 9 6 4.4314 -2.2139 -0.0043 10 6 4.1294 -3.6484 -0.0061 11 8 2.9726 -4.0267 -0.0066 12 7 5.1328 -4.5481 -0.0072 13 6 4.8310 -5.9817 -0.0096 14 6 6.1375 -6.7780 -0.0110 15 1 6.8125 -6.4861 -0.8155 16 6 5.9370 -8.2996 0.1092 17 6 7.1259 -8.2782 1.0870 18 7 6.7857 -6.8598 1.3123 19 6 6.9895 -5.9752 2.3375 20 1 6.6311 -4.9598 2.2538 21 6 7.6568 -6.3834 3.4842 22 7 8.0931 -7.6210 3.5864 23 14 7.9355 -5.1765 4.8824 24 1 7.3522 -3.8590 4.5226 25 1 7.2820 -5.6867 6.1144 26 1 9.3931 -5.0243 5.1218 27 6 3.4970 -1.1606 -0.0077 28 7 2.1634 -1.1394 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6700 2.1507 -0.0004 33 1 4.5268 2.8023 -1.0275 34 1 3.7641 3.2600 0.5144 35 1 5.2896 2.3429 0.5138 36 1 6.6477 -2.1626 -0.0055 37 1 6.0547 -4.2467 -0.0071 38 1 4.2531 -6.2328 0.8799 39 1 4.2536 -6.2301 -0.9001 40 1 4.9921 -8.5823 0.5734 41 1 6.1360 -8.8428 -0.8145 42 1 6.9842 -8.9087 1.9648 43 1 8.0925 -8.4289 0.6066 44 1 8.5591 -7.9064 4.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038593797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:52 Heat of formation + Delta-G solvation = 133.961963 kcal Electronic energy + Delta-G solvation = -27592.971057 eV Core-core repulsion = 23742.386631 eV Total energy + Delta-G solvation = -3850.584426 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.63065 -39.18784 -38.38113 -37.64792 -35.28516 -33.85201 -32.46481 -32.11432 -30.63998 -28.95609 -28.10318 -27.88968 -27.31777 -23.89516 -23.30775 -22.94941 -22.02897 -21.58471 -19.78533 -19.04052 -18.54923 -17.37729 -16.98729 -16.54338 -16.28200 -15.45268 -15.14551 -15.05403 -14.38399 -14.29534 -14.10007 -14.00865 -13.80164 -13.67569 -13.53753 -13.34195 -13.05587 -12.80863 -12.74011 -12.51792 -12.03154 -11.78344 -11.61534 -11.37318 -11.04367 -11.00492 -10.91851 -10.69695 -10.46940 -9.97916 -9.90563 -9.69052 -9.68576 -9.52710 -9.21600 -8.75061 -8.44917 -7.98569 -6.83504 -5.71512 -3.03296 0.19417 0.57655 1.72662 2.12301 2.99079 3.41097 3.47388 3.49052 3.51337 3.55434 3.79608 3.89310 4.03284 4.46265 4.48496 4.70823 4.78236 4.85394 4.91316 4.98830 5.10864 5.18380 5.20568 5.24130 5.37709 5.45966 5.57588 5.58641 5.70472 5.83960 5.87822 6.00255 6.09346 6.21266 6.27840 6.43037 6.47941 6.69264 6.82314 7.06875 7.16417 7.31235 7.47981 7.50598 7.65417 8.04048 8.11904 8.83420 9.10093 9.76581 10.65213 11.45443 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.003267 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.394523 B = 8569.343009 C = 9598.055116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.208 3.792 3 C -0.229 4.229 4 C 0.198 3.802 5 C -0.118 4.118 6 N -0.311 5.311 7 N -0.313 5.313 8 C 0.132 3.868 9 C -0.282 4.282 10 C 0.592 3.408 11 O -0.540 6.540 12 N -0.714 5.714 13 C 0.128 3.872 14 C 0.126 3.874 15 H 0.050 0.950 16 C -0.156 4.156 17 C 0.159 3.841 18 N -0.602 5.602 19 C -0.215 4.215 20 H 0.080 0.920 21 C -0.008 4.008 22 N -0.920 5.920 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.291 1.291 26 H -0.291 1.291 27 C 0.324 3.676 28 N -0.446 5.446 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.167 0.833 33 H 0.094 0.906 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.207 0.793 37 H 0.398 0.602 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.073 0.927 43 H 0.026 0.974 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.743 19.304 -10.721 24.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.045 3.955 3 C -0.253 4.253 4 C 0.081 3.919 5 C -0.175 4.175 6 N -0.081 5.081 7 N -0.135 5.135 8 C -0.049 4.049 9 C -0.298 4.298 10 C 0.378 3.622 11 O -0.418 6.418 12 N -0.364 5.364 13 C 0.004 3.996 14 C 0.019 3.981 15 H 0.067 0.933 16 C -0.195 4.195 17 C 0.033 3.967 18 N -0.329 5.329 19 C -0.343 4.343 20 H 0.098 0.902 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.218 1.218 26 H -0.218 1.218 27 C 0.093 3.907 28 N -0.159 5.159 29 H 0.109 0.891 30 H 0.108 0.892 31 H 0.103 0.897 32 H 0.185 0.815 33 H 0.112 0.888 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.223 0.777 37 H 0.232 0.768 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.095 0.905 41 H 0.071 0.929 42 H 0.091 0.909 43 H 0.044 0.956 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -10.999 19.265 -10.381 24.493 hybrid contribution 0.941 0.827 0.879 1.531 sum -10.058 20.092 -9.502 24.396 Atomic orbital electron populations 1.20834 0.86794 1.04655 1.04144 1.22085 0.98186 0.87293 0.87888 1.21552 0.91536 1.01326 1.10918 1.20795 0.92000 0.86351 0.92777 1.21005 1.01100 0.90711 1.04721 1.47022 1.07801 1.05892 1.47396 1.77527 0.88721 1.15892 1.31368 1.24230 0.98555 0.90575 0.91590 1.19555 0.90396 0.93560 1.26325 1.16724 0.85267 0.83523 0.76643 1.90798 1.19749 1.80562 1.50731 1.45673 1.08857 1.06722 1.75146 1.21701 0.98151 0.78432 1.01361 1.22511 0.91787 0.93778 0.90055 0.93303 1.23771 1.01288 0.94918 0.99510 1.22192 0.92353 0.86869 0.95242 1.46074 1.65631 1.09367 1.11802 1.19010 1.30374 0.92221 0.92646 0.90244 1.24737 1.00950 0.96615 0.98146 1.69829 1.43370 1.15597 1.27987 0.86144 0.77397 0.80194 0.82666 1.20578 1.21801 1.21842 1.20353 0.87817 0.86025 0.96518 1.68164 1.03701 1.28112 1.15877 0.89086 0.89207 0.89676 0.81507 0.88776 0.88659 0.89091 0.77701 0.76815 0.91047 0.92260 0.90509 0.92854 0.90878 0.95622 0.93830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.19 36.01 0.37 -0.34 16 2 C 0.21 2.22 6.83 -82.09 -0.56 1.65 16 3 C -0.23 -1.82 9.38 -39.82 -0.37 -2.19 16 4 C 0.20 1.95 6.85 -81.49 -0.56 1.39 16 5 C -0.12 -0.70 10.08 36.00 0.36 -0.33 16 6 N -0.31 -4.38 3.86 -8.26 -0.03 -4.41 16 7 N -0.31 -4.56 12.39 30.76 0.38 -4.18 16 8 C 0.13 1.93 11.44 -17.13 -0.20 1.73 16 9 C -0.28 -4.93 6.17 -104.66 -0.65 -5.58 16 10 C 0.59 11.67 7.78 -12.89 -0.10 11.57 16 11 O -0.54 -12.39 16.74 5.18 0.09 -12.30 16 12 N -0.71 -13.09 5.52 -61.64 -0.34 -13.43 16 13 C 0.13 2.45 5.54 -4.04 -0.02 2.43 16 14 C 0.13 2.48 4.33 -66.86 -0.29 2.19 16 15 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 16 C -0.16 -2.92 7.86 -25.80 -0.20 -3.12 16 17 C 0.16 3.69 7.52 -2.97 -0.02 3.67 16 18 N -0.60 -14.89 3.57 -170.71 -0.61 -15.50 16 19 C -0.21 -5.86 10.51 -15.06 -0.16 -6.02 16 20 H 0.08 2.10 7.80 -52.48 -0.41 1.69 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 22 N -0.92 -27.34 11.38 55.49 0.63 -26.71 16 23 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 24 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C 0.32 5.44 7.74 -155.83 -1.21 4.23 16 28 N -0.45 -7.07 10.18 -8.25 -0.08 -7.16 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 32 H 0.17 0.56 8.06 -52.49 -0.42 0.13 16 33 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.09 0.28 8.09 -51.92 -0.42 -0.14 16 35 H 0.09 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.21 2.36 7.46 -52.49 -0.39 1.97 16 37 H 0.40 6.66 7.39 -40.82 -0.30 6.36 16 38 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 39 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.43 8.10 -51.93 -0.42 1.01 16 41 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.07 1.89 7.15 -51.93 -0.37 1.52 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -37.83 375.94 -9.12 -46.95 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: -6.09 Total: 2.62 kcal Atomic # 6 Polarization: 14.66 SS G_CDS: -3.70 Total: 10.96 kcal Atomic # 7 Polarization: -71.33 SS G_CDS: -0.05 Total: -71.38 kcal Atomic # 8 Polarization: -12.39 SS G_CDS: 0.09 Total: -12.30 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.83 -9.12 -46.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038593797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.910 kcal (2) G-P(sol) polarization free energy of solvation -37.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 133.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds