Wall clock time and date at job start Tue Mar 31 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.39966 * 119.94273 * 2 1 4 4 C 1.35755 * 119.35008 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.42273 * 180.02562 * 4 3 2 6 6 N 1.36322 * 119.15681 * 0.02562 * 4 3 2 7 7 N 1.39905 * 132.15597 * 179.97438 * 6 4 3 8 8 C 1.30704 * 109.51274 * 180.02562 * 7 6 4 9 9 C 1.40637 * 108.72855 * 0.02562 * 8 7 6 10 10 C 1.46591 * 126.53742 * 179.97438 * 9 8 7 11 11 O 1.21715 * 119.99977 * 180.02562 * 10 9 8 12 12 N 1.34771 * 119.99644 * 0.02650 * 10 9 8 13 13 C 1.46505 * 119.99622 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47212 * 179.97438 * 13 12 10 15 15 H 1.09002 * 112.96693 * 306.67860 * 14 13 12 16 16 C 1.53944 * 113.77224 * 175.00107 * 14 13 12 17 17 C 1.53950 * 86.29079 * 222.09231 * 16 14 13 18 18 N 1.47585 * 113.77049 * 78.49995 * 14 13 12 19 19 C 1.36932 * 134.49495 * 318.94949 * 18 14 13 20 20 H 1.08007 * 119.99670 * 359.97438 * 19 18 14 21 21 C 1.38814 * 120.00453 * 179.97438 * 19 18 14 22 22 N 1.31623 * 119.99581 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00371 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46974 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47039 * 119.99851 * 23 21 19 26 26 H 1.48494 * 109.47110 * 240.00230 * 23 21 19 27 27 C 1.36596 * 119.72993 * 0.27310 * 6 4 3 28 28 N 1.31497 * 119.94432 * 179.97438 * 2 1 3 29 29 H 1.09004 * 109.47161 * 89.99882 * 1 2 3 30 30 H 1.08995 * 109.47209 * 209.99807 * 1 2 3 31 31 H 1.08998 * 109.47028 * 329.99953 * 1 2 3 32 32 H 1.08000 * 120.32594 * 359.97438 * 3 2 1 33 33 H 1.08999 * 109.47569 * 269.97985 * 5 4 3 34 34 H 1.09007 * 109.46748 * 29.98130 * 5 4 3 35 35 H 1.08999 * 109.46903 * 149.97708 * 5 4 3 36 36 H 1.07998 * 125.62937 * 179.97438 * 8 7 6 37 37 H 0.96996 * 120.00772 * 359.97438 * 12 10 9 38 38 H 1.09002 * 109.47068 * 299.99729 * 13 12 10 39 39 H 1.09001 * 109.47372 * 59.99816 * 13 12 10 40 40 H 1.09005 * 113.73705 * 336.43429 * 16 14 13 41 41 H 1.08994 * 113.74699 * 107.63859 * 16 14 13 42 42 H 1.08997 * 113.77044 * 137.90682 * 17 16 14 43 43 H 1.08997 * 113.76603 * 269.19409 * 17 16 14 44 44 H 0.97001 * 120.00214 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2056 1.2128 0.0000 4 6 3.5631 1.1988 -0.0005 5 6 4.3396 2.4903 0.0000 6 7 4.2149 0.0015 -0.0016 7 7 5.5748 -0.3273 -0.0028 8 6 5.7096 -1.6273 -0.0040 9 6 4.4314 -2.2139 -0.0043 10 6 4.1294 -3.6484 -0.0061 11 8 2.9726 -4.0267 -0.0066 12 7 5.1328 -4.5481 -0.0072 13 6 4.8310 -5.9817 -0.0096 14 6 6.1375 -6.7780 -0.0110 15 1 6.8125 -6.4861 -0.8155 16 6 5.9370 -8.2996 0.1092 17 6 7.1259 -8.2782 1.0870 18 7 6.7857 -6.8598 1.3123 19 6 6.9895 -5.9752 2.3375 20 1 6.6311 -4.9598 2.2538 21 6 7.6568 -6.3834 3.4842 22 7 8.0931 -7.6210 3.5864 23 14 7.9355 -5.1765 4.8824 24 1 7.3522 -3.8590 4.5226 25 1 7.2820 -5.6867 6.1144 26 1 9.3931 -5.0243 5.1218 27 6 3.4970 -1.1606 -0.0077 28 7 2.1634 -1.1394 0.0005 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3633 -0.8899 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6700 2.1507 -0.0004 33 1 4.5268 2.8023 -1.0275 34 1 3.7641 3.2600 0.5144 35 1 5.2896 2.3429 0.5138 36 1 6.6477 -2.1626 -0.0055 37 1 6.0547 -4.2467 -0.0071 38 1 4.2531 -6.2328 0.8799 39 1 4.2536 -6.2301 -0.9001 40 1 4.9921 -8.5823 0.5734 41 1 6.1360 -8.8428 -0.8145 42 1 6.9842 -8.9087 1.9648 43 1 8.0925 -8.4289 0.6066 44 1 8.5591 -7.9064 4.3878 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038593797.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:51 Heat of formation + Delta-G solvation = 106.861459 kcal Electronic energy + Delta-G solvation = -27594.146223 eV Core-core repulsion = 23742.386631 eV Total energy + Delta-G solvation = -3851.759592 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.61138 -40.60487 -39.61576 -39.16585 -36.12403 -35.42226 -34.18442 -33.32914 -31.64287 -30.01010 -29.78809 -28.86237 -28.60758 -25.26932 -25.04342 -24.07419 -23.21519 -22.80339 -21.23065 -20.66909 -19.57360 -18.66629 -18.31244 -17.78757 -17.53269 -17.04425 -16.77067 -16.10281 -15.94009 -15.62129 -15.45845 -15.08096 -14.82046 -14.73818 -14.60457 -14.45530 -14.25037 -13.90490 -13.55115 -13.32885 -13.25416 -13.06498 -12.97028 -12.82652 -12.72837 -12.65514 -12.56783 -12.27412 -11.88842 -11.82192 -11.49202 -11.33600 -10.87771 -10.84434 -10.78612 -10.56477 -9.99330 -9.09698 -8.85314 -7.85177 -5.15777 -0.68049 -0.31180 0.81371 0.96685 1.41686 1.43683 1.51907 2.01772 2.28475 2.48469 2.55103 2.67205 2.89379 3.18708 3.36253 3.42041 3.69805 3.85364 3.93823 4.00536 4.09584 4.16955 4.33327 4.35801 4.39277 4.47057 4.55322 4.68419 4.71990 4.75848 4.79557 4.82320 4.91670 4.98511 5.08967 5.12974 5.15019 5.26965 5.37188 5.40014 5.54014 5.65122 5.78741 6.01084 6.12571 6.58294 6.69303 6.98863 7.37134 7.67730 8.62793 9.32032 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013897 B = 0.003267 C = 0.002917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.394523 B = 8569.343009 C = 9598.055116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.208 3.792 3 C -0.208 4.208 4 C 0.180 3.820 5 C -0.113 4.113 6 N -0.315 5.315 7 N -0.324 5.324 8 C 0.139 3.861 9 C -0.332 4.332 10 C 0.591 3.409 11 O -0.585 6.585 12 N -0.709 5.709 13 C 0.137 3.863 14 C 0.134 3.866 15 H 0.075 0.925 16 C -0.131 4.131 17 C 0.151 3.849 18 N -0.629 5.629 19 C -0.208 4.208 20 H 0.083 0.917 21 C -0.070 4.070 22 N -0.954 5.954 23 Si 0.963 3.037 24 H -0.271 1.271 25 H -0.299 1.299 26 H -0.290 1.290 27 C 0.315 3.685 28 N -0.507 5.507 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.226 0.774 33 H 0.110 0.890 34 H 0.134 0.866 35 H 0.074 0.926 36 H 0.227 0.773 37 H 0.405 0.595 38 H 0.038 0.962 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.095 0.905 42 H 0.038 0.962 43 H 0.025 0.975 44 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.003 22.974 -12.099 28.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.049 3.951 3 C -0.231 4.231 4 C 0.064 3.936 5 C -0.170 4.170 6 N -0.085 5.085 7 N -0.145 5.145 8 C -0.043 4.043 9 C -0.348 4.348 10 C 0.381 3.619 11 O -0.466 6.466 12 N -0.359 5.359 13 C 0.013 3.987 14 C 0.028 3.972 15 H 0.092 0.908 16 C -0.170 4.170 17 C 0.026 3.974 18 N -0.355 5.355 19 C -0.336 4.336 20 H 0.101 0.899 21 C -0.262 4.262 22 N -0.604 5.604 23 Si 0.793 3.207 24 H -0.196 1.196 25 H -0.227 1.227 26 H -0.217 1.217 27 C 0.081 3.919 28 N -0.222 5.222 29 H 0.127 0.873 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.242 0.758 33 H 0.128 0.872 34 H 0.152 0.848 35 H 0.093 0.907 36 H 0.243 0.757 37 H 0.241 0.759 38 H 0.056 0.944 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.056 0.944 43 H 0.043 0.957 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.270 23.000 -11.796 28.613 hybrid contribution 1.130 -0.120 1.227 1.672 sum -11.140 22.880 -10.569 27.555 Atomic orbital electron populations 1.21050 0.83996 1.05767 1.05516 1.22996 1.00064 0.87208 0.84818 1.22209 0.90785 1.02408 1.07676 1.21847 0.93263 0.86381 0.92104 1.21181 1.00426 0.89376 1.06012 1.47259 1.07343 1.06693 1.47177 1.77429 0.89463 1.15635 1.31960 1.24495 0.98459 0.90638 0.90700 1.19430 0.92131 0.92564 1.30703 1.17068 0.84667 0.84670 0.75535 1.90747 1.21347 1.81450 1.53105 1.45593 1.09146 1.06274 1.74888 1.21505 0.97590 0.79044 1.00603 1.22682 0.91635 0.94679 0.88215 0.90769 1.23569 0.99013 0.94531 0.99848 1.22166 0.94230 0.85829 0.95216 1.46416 1.65984 1.09772 1.13375 1.19328 1.28362 0.92673 0.93278 0.89926 1.25445 1.02143 0.98098 1.00554 1.69999 1.45008 1.17140 1.28242 0.85222 0.77020 0.78722 0.79727 1.19608 1.22709 1.21736 1.20489 0.88558 0.86844 0.96051 1.68214 1.03597 1.31059 1.19299 0.87302 0.91133 0.85460 0.75762 0.87169 0.84756 0.90703 0.75659 0.75913 0.94389 0.90447 0.90574 0.88624 0.94361 0.95740 0.94631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.10 10.19 71.24 0.73 -0.37 16 2 C 0.21 3.99 6.83 43.03 0.29 4.28 16 3 C -0.21 -2.44 9.38 22.11 0.21 -2.23 16 4 C 0.18 3.02 6.85 41.28 0.28 3.31 16 5 C -0.11 -0.90 10.08 71.24 0.72 -0.18 16 6 N -0.32 -8.63 3.86 -180.05 -0.70 -9.33 16 7 N -0.32 -9.31 12.39 -56.58 -0.70 -10.01 16 8 C 0.14 4.12 11.44 85.45 0.98 5.09 16 9 C -0.33 -12.00 6.17 -19.89 -0.12 -12.12 16 10 C 0.59 24.27 7.78 86.42 0.67 24.94 16 11 O -0.58 -28.16 16.74 -4.40 -0.07 -28.23 16 12 N -0.71 -26.41 5.52 -467.15 -2.58 -28.99 16 13 C 0.14 5.27 5.54 86.38 0.48 5.75 16 14 C 0.13 5.13 4.33 45.09 0.20 5.32 16 15 H 0.08 2.57 8.14 -2.39 -0.02 2.56 16 16 C -0.13 -4.71 7.86 31.25 0.25 -4.47 16 17 C 0.15 7.09 7.52 86.48 0.65 7.74 16 18 N -0.63 -31.32 3.57 -694.01 -2.48 -33.80 16 19 C -0.21 -11.48 10.51 84.03 0.88 -10.60 16 20 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 21 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 22 N -0.95 -58.46 11.38 21.65 0.25 -58.21 16 23 Si 0.96 47.42 29.55 68.60 2.03 49.45 16 24 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 25 H -0.30 -15.01 7.11 99.48 0.71 -14.30 16 26 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 27 C 0.31 10.74 7.74 133.98 1.04 11.77 16 28 N -0.51 -16.22 10.18 -180.00 -1.83 -18.05 16 29 H 0.11 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.13 0.25 8.09 -2.39 -0.02 0.23 16 32 H 0.23 -0.11 8.06 -2.91 -0.02 -0.13 16 33 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.13 0.03 8.09 -2.38 -0.02 0.01 16 35 H 0.07 0.90 8.10 -2.39 -0.02 0.88 16 36 H 0.23 5.18 7.46 -2.91 -0.02 5.16 16 37 H 0.41 13.63 7.39 -92.71 -0.69 12.94 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.08 2.76 8.10 -2.38 -0.02 2.75 16 41 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 42 H 0.04 2.05 7.15 -2.39 -0.02 2.03 16 43 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.24 14.67 8.31 -92.71 -0.77 13.90 16 Total: -1.00 -88.98 375.94 1.97 -87.01 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.35 Total: 15.52 kcal Atomic # 6 Polarization: 26.94 SS G_CDS: 7.71 Total: 34.65 kcal Atomic # 7 Polarization: -150.35 SS G_CDS: -8.04 Total: -158.39 kcal Atomic # 8 Polarization: -28.16 SS G_CDS: -0.07 Total: -28.23 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -88.98 1.97 -87.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038593797.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 193.875 kcal (2) G-P(sol) polarization free energy of solvation -88.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds