Wall clock time and date at job start Tue Mar 31 2020 05:41:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30249 * 125.70868 * 2 1 4 4 N 1.39984 * 109.74896 * 180.02562 * 3 2 1 5 5 H 0.97006 * 125.89908 * 179.97438 * 4 3 2 6 6 C 1.37064 * 108.18837 * 359.97438 * 4 3 2 7 7 N 1.32554 * 133.44494 * 180.02562 * 6 4 3 8 8 C 1.31447 * 121.98030 * 179.97438 * 7 6 4 9 9 C 1.50695 * 119.16753 * 179.97438 * 8 7 6 10 10 C 1.38706 * 121.66402 * 0.25487 * 8 7 6 11 11 C 1.39296 * 119.36244 * 359.48312 * 10 8 7 12 12 C 1.47864 * 121.08690 * 180.21684 * 11 10 8 13 13 O 1.21553 * 119.99918 * 217.84107 * 12 11 10 14 14 N 1.34776 * 120.00211 * 37.84076 * 12 11 10 15 15 C 1.46499 * 120.00184 * 180.02562 * 14 12 11 16 16 C 1.52997 * 109.47282 * 180.02562 * 15 14 12 17 17 H 1.08996 * 112.74434 * 56.23380 * 16 15 14 18 18 C 1.53505 * 113.46872 * 187.05629 * 16 15 14 19 19 C 1.53505 * 83.34341 * 140.84395 * 18 16 15 20 20 N 1.47066 * 113.46515 * 285.49049 * 16 15 14 21 21 C 1.36934 * 136.05902 * 38.06568 * 20 16 15 22 22 H 1.08000 * 119.99994 * 0.02562 * 21 20 16 23 23 C 1.38813 * 120.00523 * 180.02562 * 21 20 16 24 24 N 1.31627 * 119.99718 * 359.97438 * 23 21 20 25 25 Si 1.86798 * 120.00380 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47306 * 89.99677 * 25 23 21 27 27 H 1.48504 * 109.46981 * 210.00046 * 25 23 21 28 28 H 1.48505 * 109.46790 * 329.99626 * 25 23 21 29 29 C 1.40926 * 106.34756 * 0.02562 * 6 4 3 30 30 H 1.09000 * 109.47426 * 96.20534 * 1 2 3 31 31 H 1.09000 * 109.47571 * 216.20248 * 1 2 3 32 32 H 1.09000 * 109.47631 * 336.20409 * 1 2 3 33 33 H 1.08995 * 109.47256 * 89.99887 * 9 8 7 34 34 H 1.08997 * 109.46899 * 329.99414 * 9 8 7 35 35 H 1.09004 * 109.46998 * 210.00135 * 9 8 7 36 36 H 1.08001 * 120.31168 * 179.74230 * 10 8 7 37 37 H 0.96999 * 119.99810 * 0.02562 * 14 12 11 38 38 H 1.09006 * 109.46794 * 299.99679 * 15 14 12 39 39 H 1.08999 * 109.47368 * 59.99587 * 15 14 12 40 40 H 1.08997 * 114.20698 * 254.43402 * 18 16 15 41 41 H 1.08993 * 114.20543 * 27.25914 * 18 16 15 42 42 H 1.08998 * 113.46348 * 219.15206 * 19 18 16 43 43 H 1.09000 * 113.46336 * 88.71211 * 19 18 16 44 44 H 0.96995 * 119.99953 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2672 1.0576 0.0000 4 7 3.6131 0.6727 -0.0006 5 1 4.3760 1.2718 -0.0011 6 6 3.6664 -0.6969 -0.0004 7 7 4.6635 -1.5703 -0.0003 8 6 4.4525 -2.8677 0.0004 9 6 5.6334 -3.8038 -0.0001 10 6 3.1704 -3.3969 -0.0042 11 6 2.0758 -2.5354 0.0013 12 6 0.6927 -3.0581 0.0015 13 8 -0.1708 -2.4927 -0.6404 14 7 0.3894 -4.1616 0.7135 15 6 -0.9808 -4.6799 0.7132 16 6 -1.0538 -5.9290 1.5937 17 1 -0.7096 -5.7476 2.6118 18 6 -2.4084 -6.6478 1.5239 19 6 -1.5381 -7.9117 1.5644 20 7 -0.4495 -7.1181 0.9743 21 6 0.6448 -7.3739 0.1919 22 1 1.2983 -6.5663 -0.1032 23 6 0.9143 -8.6712 -0.2220 24 7 0.1182 -9.6556 0.1381 25 14 2.4075 -9.0202 -1.2887 26 1 3.5760 -9.3187 -0.4223 27 1 2.1289 -10.1873 -2.1636 28 1 2.7046 -7.8318 -2.1283 29 6 2.3305 -1.1458 -0.0003 30 1 -0.3634 -0.1111 -1.0216 31 1 -0.3634 -0.8292 0.6070 32 1 -0.3634 0.9403 0.4146 33 1 5.9190 -4.0291 1.0274 34 1 6.4705 -3.3323 -0.5149 35 1 5.3649 -4.7272 -0.5134 36 1 3.0223 -4.4667 -0.0077 37 1 1.0784 -4.6126 1.2261 38 1 -1.6568 -3.9197 1.1050 39 1 -1.2725 -4.9353 -0.3054 40 1 -3.0345 -6.5079 2.4050 41 1 -2.9431 -6.5033 0.5852 42 1 -1.8980 -8.7074 0.9122 43 1 -1.3237 -8.2588 2.5751 44 1 0.3066 -10.5621 -0.1508 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038811962.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:59 Heat of formation + Delta-G solvation = 121.583987 kcal Electronic energy + Delta-G solvation = -28169.456468 eV Core-core repulsion = 24318.335292 eV Total energy + Delta-G solvation = -3851.121176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.00222 -39.57770 -38.49693 -38.08882 -34.27016 -33.81150 -32.35053 -32.19215 -31.46841 -28.23634 -27.98021 -27.87142 -27.36413 -24.45138 -23.54177 -22.70861 -21.89131 -20.77842 -19.93039 -19.32255 -18.46817 -17.37260 -17.21898 -16.56009 -15.95034 -15.69141 -15.46644 -15.07801 -14.49299 -14.41329 -14.11508 -14.00511 -13.75137 -13.41994 -13.21054 -13.09058 -12.89022 -12.70058 -12.45850 -12.29526 -11.94693 -11.76035 -11.58751 -11.19472 -11.08541 -11.03118 -10.82297 -10.66056 -10.62261 -10.27595 -9.99706 -9.89982 -9.56395 -9.28029 -8.93955 -8.87984 -8.69509 -8.58457 -6.97277 -5.83819 -3.16891 0.28784 1.01402 2.19960 2.23555 2.85283 3.24257 3.31886 3.36586 3.40070 3.59471 3.97211 4.28747 4.35714 4.47150 4.52228 4.68444 5.07021 5.13229 5.14468 5.32098 5.33947 5.45367 5.49505 5.52461 5.62503 5.68549 5.74024 5.77796 5.82914 5.84154 5.90730 6.01734 6.18606 6.24777 6.33779 6.41556 6.53074 6.62041 6.74753 6.93218 7.15421 7.23226 7.32483 7.50868 7.68856 7.74328 7.89948 8.30776 8.94837 9.62949 10.55651 11.33224 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012577 B = 0.004071 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.768933 B = 6875.935554 C = 8681.261353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.128 3.872 3 N -0.246 5.246 4 N -0.494 5.494 5 H 0.445 0.555 6 C 0.318 3.682 7 N -0.499 5.499 8 C 0.202 3.798 9 C -0.108 4.108 10 C -0.180 4.180 11 C 0.007 3.993 12 C 0.550 3.450 13 O -0.527 6.527 14 N -0.699 5.699 15 C 0.121 3.879 16 C 0.126 3.874 17 H 0.049 0.951 18 C -0.160 4.160 19 C 0.151 3.849 20 N -0.601 5.601 21 C -0.216 4.216 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.916 5.916 25 Si 0.905 3.095 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.280 1.280 29 C -0.191 4.191 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.154 0.846 37 H 0.405 0.595 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.025 0.975 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.355 14.484 3.019 15.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.048 4.048 3 N -0.063 5.063 4 N -0.211 5.211 5 H 0.291 0.709 6 C 0.077 3.923 7 N -0.216 5.216 8 C 0.053 3.947 9 C -0.166 4.166 10 C -0.203 4.203 11 C -0.007 4.007 12 C 0.335 3.665 13 O -0.404 6.404 14 N -0.349 5.349 15 C -0.004 4.004 16 C 0.019 3.981 17 H 0.066 0.934 18 C -0.199 4.199 19 C 0.026 3.974 20 N -0.327 5.327 21 C -0.343 4.343 22 H 0.097 0.903 23 C -0.202 4.202 24 N -0.563 5.563 25 Si 0.736 3.264 26 H -0.215 1.215 27 H -0.216 1.216 28 H -0.205 1.205 29 C -0.201 4.201 30 H 0.110 0.890 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.172 0.828 37 H 0.241 0.759 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.077 0.923 41 H 0.099 0.901 42 H 0.090 0.910 43 H 0.043 0.957 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 4.796 16.339 2.356 17.191 hybrid contribution 1.051 -1.369 -0.282 1.749 sum 5.847 14.970 2.073 16.205 Atomic orbital electron populations 1.20451 0.84714 1.02943 1.04804 1.22414 0.97721 0.88287 0.96365 1.76838 0.86017 1.22362 1.21129 1.45863 1.06402 1.02055 1.66808 0.70928 1.18951 0.89816 0.86651 0.96920 1.66296 1.34176 1.02382 1.18737 1.21171 0.94568 0.88669 0.90273 1.20858 0.94620 0.97162 1.03944 1.22140 0.91773 1.01620 1.04736 1.19929 0.94405 0.91391 0.95022 1.18011 0.86920 0.81048 0.80515 1.90776 1.48506 1.58610 1.42532 1.45939 1.13282 1.26916 1.48760 1.21916 0.81150 0.95318 1.01973 1.22431 0.93012 0.88060 0.94647 0.93378 1.23662 0.95310 1.00144 1.00831 1.22030 0.85536 0.93700 0.96161 1.45673 1.28876 1.02484 1.55681 1.18797 1.00591 0.92847 1.22095 0.90293 1.24774 0.99018 0.95576 1.00851 1.69822 1.38126 0.99489 1.48846 0.86224 0.82346 0.77861 0.80005 1.21501 1.21613 1.20514 1.19142 0.94019 0.93647 1.13319 0.88953 0.89345 0.91268 0.89437 0.90072 0.89494 0.82816 0.75943 0.91868 0.90639 0.92304 0.90143 0.90965 0.95717 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 8.58 36.00 0.31 -0.57 16 2 C 0.13 1.83 7.22 -82.18 -0.59 1.24 16 3 N -0.25 -3.39 12.57 33.83 0.43 -2.97 16 4 N -0.49 -6.18 7.43 31.14 0.23 -5.95 16 5 H 0.44 4.11 8.96 -182.68 -1.64 2.48 16 6 C 0.32 4.55 8.48 -156.06 -1.32 3.23 16 7 N -0.50 -6.85 10.25 -8.59 -0.09 -6.94 16 8 C 0.20 2.54 6.78 -82.59 -0.56 1.98 16 9 C -0.11 -1.00 10.15 36.00 0.37 -0.64 16 10 C -0.18 -2.41 9.05 -39.02 -0.35 -2.76 16 11 C 0.01 0.10 5.82 -104.41 -0.61 -0.51 16 12 C 0.55 8.78 6.88 -12.32 -0.08 8.69 16 13 O -0.53 -9.29 13.17 5.32 0.07 -9.22 16 14 N -0.70 -10.86 5.27 -61.24 -0.32 -11.19 16 15 C 0.12 1.97 5.52 -4.04 -0.02 1.95 16 16 C 0.13 2.23 4.10 -72.38 -0.30 1.94 16 17 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 18 C -0.16 -2.71 8.03 -26.21 -0.21 -2.93 16 19 C 0.15 3.28 7.39 -8.49 -0.06 3.21 16 20 N -0.60 -13.68 3.65 -176.95 -0.65 -14.33 16 21 C -0.22 -5.41 10.55 -15.06 -0.16 -5.56 16 22 H 0.08 1.85 7.50 -52.49 -0.39 1.46 16 23 C -0.01 -0.13 5.50 -17.43 -0.10 -0.23 16 24 N -0.92 -25.81 11.51 55.49 0.64 -25.17 16 25 Si 0.91 20.73 29.55 -169.99 -5.02 15.71 16 26 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 27 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 28 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 29 C -0.19 -2.87 5.98 -106.64 -0.64 -3.51 16 30 H 0.09 1.19 7.76 -51.93 -0.40 0.79 16 31 H 0.09 1.17 6.13 -51.93 -0.32 0.85 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.09 0.74 8.07 -51.93 -0.42 0.32 16 36 H 0.15 1.92 7.83 -52.49 -0.41 1.51 16 37 H 0.41 6.04 7.77 -40.82 -0.32 5.73 16 38 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.08 1.36 8.12 -51.93 -0.42 0.94 16 42 H 0.07 1.77 7.12 -51.93 -0.37 1.40 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 367.47 15.07 5.54 5.54 Total: -1.00 -31.25 367.47 -10.72 -41.96 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -7.21 Total: 7.04 kcal Atomic # 6 Polarization: 9.86 SS G_CDS: -4.33 Total: 5.53 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: 0.24 Total: -66.55 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.25 -10.72 -41.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038811962.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.548 kcal (2) G-P(sol) polarization free energy of solvation -31.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds