Wall clock time and date at job start Tue Mar 31 2020 05:42:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30251 * 125.70348 * 2 1 4 4 N 1.39989 * 109.74951 * 179.74772 * 3 2 1 5 5 H 0.97000 * 125.90853 * 180.27206 * 4 3 2 6 6 C 1.37072 * 108.18519 * 0.36152 * 4 3 2 7 7 N 1.32543 * 133.44191 * 179.97438 * 6 4 3 8 8 C 1.31447 * 121.97704 * 179.67874 * 7 6 4 9 9 C 1.50696 * 119.16856 * 179.97438 * 8 7 6 10 10 C 1.38703 * 121.67183 * 359.97438 * 8 7 6 11 11 C 1.39301 * 119.35654 * 0.02562 * 10 8 7 12 12 C 1.47866 * 121.08470 * 180.02562 * 11 10 8 13 13 O 1.21551 * 119.99863 * 141.97607 * 12 11 10 14 14 N 1.34784 * 120.00319 * 321.97137 * 12 11 10 15 15 C 1.46497 * 119.99927 * 179.97438 * 14 12 11 16 16 C 1.53002 * 109.47078 * 179.97438 * 15 14 12 17 17 H 1.08997 * 112.96428 * 306.68676 * 16 15 14 18 18 C 1.53940 * 113.77336 * 175.00141 * 16 15 14 19 19 C 1.53935 * 86.29205 * 222.09670 * 18 16 15 20 20 N 1.47575 * 86.12157 * 23.60653 * 19 18 16 21 21 C 1.36936 * 134.49815 * 155.35933 * 20 19 18 22 22 H 1.07994 * 120.00157 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99872 * 0.02562 * 21 20 19 24 24 N 1.31628 * 120.00035 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00114 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47295 * 359.97438 * 25 23 21 27 27 H 1.48506 * 109.47207 * 119.99634 * 25 23 21 28 28 H 1.48498 * 109.46908 * 239.99801 * 25 23 21 29 29 C 1.40926 * 106.34524 * 359.65176 * 6 4 3 30 30 H 1.09007 * 109.47097 * 264.08090 * 1 2 3 31 31 H 1.08998 * 109.47360 * 24.07913 * 1 2 3 32 32 H 1.09004 * 109.47352 * 144.08108 * 1 2 3 33 33 H 1.09003 * 109.47454 * 89.99732 * 9 8 7 34 34 H 1.09001 * 109.47646 * 210.00396 * 9 8 7 35 35 H 1.09003 * 109.47504 * 330.00347 * 9 8 7 36 36 H 1.07995 * 120.32290 * 180.02562 * 10 8 7 37 37 H 0.96996 * 119.99684 * 0.02562 * 14 12 11 38 38 H 1.08997 * 109.47467 * 300.00276 * 15 14 12 39 39 H 1.09000 * 109.47046 * 60.00658 * 15 14 12 40 40 H 1.09005 * 113.74075 * 336.44167 * 18 16 15 41 41 H 1.09003 * 113.73902 * 107.64027 * 18 16 15 42 42 H 1.09002 * 113.77174 * 137.91063 * 19 18 16 43 43 H 1.09002 * 113.76952 * 269.19136 * 19 18 16 44 44 H 0.96997 * 119.99723 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2671 1.0577 0.0000 4 7 3.6131 0.6729 0.0058 5 1 4.3760 1.2720 0.0107 6 6 3.6665 -0.6968 0.0013 7 7 4.6636 -1.5700 0.0031 8 6 4.4527 -2.8674 0.0038 9 6 5.6337 -3.8035 0.0053 10 6 3.1707 -3.3968 0.0032 11 6 2.0760 -2.5353 0.0013 12 6 0.6929 -3.0582 0.0012 13 8 -0.1692 -2.4966 0.6483 14 7 0.3881 -4.1576 -0.7165 15 6 -0.9821 -4.6759 -0.7161 16 6 -1.0570 -5.9200 -1.6036 17 1 -0.6688 -5.7500 -2.6078 18 6 -2.4286 -6.6184 -1.5786 19 6 -1.6425 -7.9407 -1.5206 20 7 -0.5354 -7.1417 -0.9606 21 6 0.5428 -7.4214 -0.1641 22 1 1.2279 -6.6340 0.1134 23 6 0.7553 -8.7170 0.2866 24 7 -0.0799 -9.6766 -0.0513 25 14 2.2257 -9.0984 1.3737 26 1 3.0046 -7.8558 1.6068 27 1 1.7533 -9.6383 2.6739 28 1 3.0886 -10.1046 0.7040 29 6 2.3306 -1.1457 0.0009 30 1 -0.3634 -0.1060 1.0223 31 1 -0.3634 0.9382 -0.4193 32 1 -0.3634 -0.8323 -0.6029 33 1 5.9177 -4.0285 1.0333 34 1 5.3660 -4.7270 -0.5082 35 1 6.4717 -3.3321 -0.5082 36 1 3.0225 -4.4666 0.0043 37 1 1.0761 -4.6060 -1.2326 38 1 -1.2714 -4.9373 0.3018 39 1 -1.6590 -3.9137 -1.1019 40 1 -3.0092 -6.4133 -0.6791 41 1 -3.0043 -6.4879 -2.4950 42 1 -2.0567 -8.6678 -0.8222 43 1 -1.4271 -8.3671 -2.5004 44 1 0.0684 -10.5818 0.2640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038811964.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:02 Heat of formation + Delta-G solvation = 117.978376 kcal Electronic energy + Delta-G solvation = -28118.819183 eV Core-core repulsion = 24267.541657 eV Total energy + Delta-G solvation = -3851.277527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.01093 -39.56380 -38.47617 -37.93870 -34.28204 -33.82201 -32.33535 -32.17530 -31.47697 -28.21934 -27.98807 -27.84867 -27.38404 -24.48706 -23.42791 -22.75030 -21.99672 -20.79433 -19.94202 -19.22828 -18.45812 -17.37976 -17.22826 -16.54128 -15.95681 -15.71214 -15.46570 -15.08949 -14.49581 -14.42881 -14.08792 -14.03398 -13.75176 -13.44107 -13.22040 -13.10617 -12.87926 -12.72071 -12.47045 -12.30211 -11.94763 -11.74585 -11.49392 -11.19409 -11.09094 -11.05181 -10.79828 -10.65630 -10.58291 -10.28928 -9.99549 -9.79826 -9.62132 -9.38538 -8.94864 -8.86057 -8.71769 -8.59601 -6.95474 -5.82316 -3.15167 0.27867 1.00403 2.19181 2.22674 2.83970 3.22796 3.33313 3.36937 3.41633 3.58334 3.96264 4.27755 4.36162 4.46389 4.51195 4.67338 5.03543 5.09843 5.13132 5.31455 5.33975 5.44421 5.50879 5.55956 5.61784 5.67718 5.72977 5.76604 5.81945 5.84879 5.89514 6.00608 6.17684 6.24264 6.34732 6.40577 6.55622 6.61269 6.75134 6.92407 7.19037 7.22363 7.35056 7.53780 7.67233 7.73423 7.92218 8.29430 8.97645 9.65137 10.53263 11.34318 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012670 B = 0.003992 C = 0.003189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.374151 B = 7012.246731 C = 8777.293474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.128 3.872 3 N -0.246 5.246 4 N -0.494 5.494 5 H 0.445 0.555 6 C 0.318 3.682 7 N -0.499 5.499 8 C 0.202 3.798 9 C -0.108 4.108 10 C -0.180 4.180 11 C 0.007 3.993 12 C 0.551 3.449 13 O -0.526 6.526 14 N -0.700 5.700 15 C 0.122 3.878 16 C 0.125 3.875 17 H 0.050 0.950 18 C -0.155 4.155 19 C 0.159 3.841 20 N -0.602 5.602 21 C -0.220 4.220 22 H 0.078 0.922 23 C -0.006 4.006 24 N -0.918 5.918 25 Si 0.906 3.094 26 H -0.279 1.279 27 H -0.290 1.290 28 H -0.291 1.291 29 C -0.191 4.191 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.154 0.846 37 H 0.405 0.595 38 H 0.077 0.923 39 H 0.064 0.936 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.027 0.973 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.803 14.700 -3.275 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.048 4.048 3 N -0.063 5.063 4 N -0.211 5.211 5 H 0.291 0.709 6 C 0.077 3.923 7 N -0.216 5.216 8 C 0.053 3.947 9 C -0.166 4.166 10 C -0.203 4.203 11 C -0.007 4.007 12 C 0.335 3.665 13 O -0.403 6.403 14 N -0.350 5.350 15 C -0.002 4.002 16 C 0.017 3.983 17 H 0.068 0.932 18 C -0.194 4.194 19 C 0.034 3.966 20 N -0.328 5.328 21 C -0.348 4.348 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.564 5.564 25 Si 0.736 3.264 26 H -0.204 1.204 27 H -0.217 1.217 28 H -0.218 1.218 29 C -0.201 4.201 30 H 0.111 0.889 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.172 0.828 37 H 0.240 0.760 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.092 0.908 43 H 0.044 0.956 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.217 16.563 -2.624 17.562 hybrid contribution 1.058 -1.400 0.348 1.788 sum 6.275 15.163 -2.276 16.567 Atomic orbital electron populations 1.20453 0.84713 1.02980 1.04792 1.22414 0.97720 0.88286 0.96371 1.76842 0.86013 1.22358 1.21108 1.45868 1.06405 1.02056 1.66796 0.70923 1.18951 0.89811 0.86653 0.96910 1.66293 1.34177 1.02382 1.18732 1.21167 0.94567 0.88670 0.90277 1.20857 0.94617 0.97154 1.03939 1.22134 0.91770 1.01600 1.04773 1.19930 0.94396 0.91394 0.95016 1.18009 0.86906 0.81013 0.80535 1.90778 1.48578 1.58626 1.42365 1.45940 1.13296 1.27298 1.48431 1.21869 0.81122 0.95192 1.02002 1.22516 0.93567 0.87904 0.94297 0.93238 1.23770 0.95418 0.99721 1.00507 1.22190 0.85534 0.92557 0.96366 1.46079 1.28871 1.03266 1.54634 1.18941 1.01110 0.93525 1.21213 0.90387 1.24762 0.98949 0.95721 1.00829 1.69826 1.37285 1.00683 1.48651 0.86155 0.82055 0.78021 0.80156 1.20414 1.21745 1.21771 1.19142 0.94024 0.93644 1.13322 0.88950 0.91241 0.89353 0.89553 0.89434 0.90044 0.82836 0.76015 0.90513 0.91764 0.90457 0.92772 0.90817 0.95559 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.88 8.59 36.01 0.31 -0.57 16 2 C 0.13 1.82 7.22 -82.18 -0.59 1.23 16 3 N -0.25 -3.37 12.57 33.83 0.43 -2.95 16 4 N -0.49 -6.14 7.43 31.14 0.23 -5.91 16 5 H 0.44 4.08 8.96 -182.68 -1.64 2.44 16 6 C 0.32 4.52 8.48 -156.06 -1.32 3.20 16 7 N -0.50 -6.80 10.25 -8.59 -0.09 -6.89 16 8 C 0.20 2.51 6.78 -82.59 -0.56 1.95 16 9 C -0.11 -0.99 10.14 36.00 0.37 -0.62 16 10 C -0.18 -2.38 9.05 -39.01 -0.35 -2.73 16 11 C 0.01 0.10 5.82 -104.41 -0.61 -0.51 16 12 C 0.55 8.71 6.86 -12.32 -0.08 8.63 16 13 O -0.53 -9.24 13.21 5.32 0.07 -9.17 16 14 N -0.70 -10.75 5.47 -61.24 -0.33 -11.08 16 15 C 0.12 1.99 5.54 -4.04 -0.02 1.97 16 16 C 0.12 2.20 4.33 -66.86 -0.29 1.91 16 17 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.16 -2.64 7.86 -25.81 -0.20 -2.84 16 19 C 0.16 3.45 7.51 -2.98 -0.02 3.43 16 20 N -0.60 -13.73 3.57 -170.77 -0.61 -14.34 16 21 C -0.22 -5.54 10.51 -15.06 -0.16 -5.70 16 22 H 0.08 1.85 7.80 -52.49 -0.41 1.44 16 23 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 24 N -0.92 -25.89 11.39 55.49 0.63 -25.25 16 25 Si 0.91 20.89 29.55 -169.99 -5.02 15.87 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 29 C -0.19 -2.85 5.98 -106.64 -0.64 -3.49 16 30 H 0.09 1.18 7.78 -51.92 -0.40 0.78 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.09 1.16 6.12 -51.93 -0.32 0.84 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.70 8.07 -51.93 -0.42 0.29 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.15 1.90 7.84 -52.49 -0.41 1.48 16 37 H 0.40 5.91 7.88 -40.82 -0.32 5.58 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 1.30 8.10 -51.93 -0.42 0.88 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.07 1.80 7.15 -51.93 -0.37 1.43 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 368.09 15.07 5.55 5.55 Total: -1.00 -31.37 368.09 -10.66 -42.02 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -7.23 Total: 6.55 kcal Atomic # 6 Polarization: 9.88 SS G_CDS: -4.28 Total: 5.60 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: 0.25 Total: -66.42 kcal Atomic # 8 Polarization: -9.24 SS G_CDS: 0.07 Total: -9.17 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.37 -10.66 -42.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038811964.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.001 kcal (2) G-P(sol) polarization free energy of solvation -31.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.023 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds