Wall clock time and date at job start Tue Mar 31 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38691 * 119.16390 * 2 1 4 4 C 1.39301 * 119.36487 * 179.97438 * 3 2 1 5 5 C 1.47872 * 121.09115 * 179.97438 * 4 3 2 6 6 O 1.21548 * 119.99525 * 180.02562 * 5 4 3 7 7 N 1.34771 * 119.99760 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99622 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.09007 * 112.96750 * 53.32018 * 9 8 7 11 11 C 1.53946 * 113.77378 * 184.99939 * 9 8 7 12 12 C 1.53945 * 86.29134 * 137.90550 * 11 9 8 13 13 N 1.47581 * 86.11961 * 336.39637 * 12 11 9 14 14 C 1.36929 * 134.49167 * 204.63911 * 13 12 11 15 15 H 1.08003 * 120.00188 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00102 * 0.02562 * 14 13 12 17 17 N 1.31623 * 119.99809 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99971 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 89.99513 * 18 16 14 20 20 H 1.48508 * 109.46914 * 209.99568 * 18 16 14 21 21 H 1.48502 * 109.47301 * 329.99198 * 18 16 14 22 22 C 1.41271 * 117.81837 * 0.27450 * 4 3 2 23 23 C 1.41108 * 133.90933 * 179.68132 * 22 4 3 24 24 N 1.30246 * 108.58340 * 180.02562 * 23 22 4 25 25 N 1.40005 * 109.75117 * 359.41347 * 24 23 22 26 26 C 1.46496 * 125.90478 * 179.97438 * 25 24 23 27 27 C 1.37072 * 108.17871 * 0.70511 * 25 24 23 28 28 N 1.31450 * 119.16442 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47102 * 90.00172 * 1 2 3 30 30 H 1.09000 * 109.47326 * 210.00112 * 1 2 3 31 31 H 1.08996 * 109.47636 * 329.99866 * 1 2 3 32 32 H 1.08002 * 120.32394 * 0.02562 * 3 2 1 33 33 H 0.96996 * 120.00772 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 35 35 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 36 36 H 1.09003 * 113.74151 * 252.25618 * 11 9 8 37 37 H 1.09006 * 113.73813 * 23.45283 * 11 9 8 38 38 H 1.08999 * 113.76275 * 90.69660 * 12 11 9 39 39 H 1.08993 * 113.76995 * 221.97658 * 12 11 9 40 40 H 0.96998 * 119.99367 * 180.02562 * 17 16 14 41 41 H 1.07997 * 125.71244 * 0.07319 * 23 22 4 42 42 H 1.09006 * 109.47311 * 270.90007 * 26 25 24 43 43 H 1.09005 * 109.47632 * 30.90478 * 26 25 24 44 44 H 1.09006 * 109.47313 * 150.90468 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.2111 0.0000 4 6 3.5759 1.2160 0.0005 5 6 4.3350 2.4849 0.0000 6 8 5.5504 2.4660 0.0000 7 7 3.6793 3.6624 -0.0005 8 6 4.4315 4.9196 -0.0005 9 6 3.4555 6.0979 -0.0018 10 1 2.7219 6.0433 0.8026 11 6 4.1406 7.4710 -0.1246 12 6 3.0099 7.8359 -1.1036 13 7 2.8698 6.3836 -1.3259 14 6 2.3893 5.6115 -2.3496 15 1 2.3982 4.5349 -2.2641 16 6 1.8919 6.2125 -3.4978 17 7 1.8816 7.5245 -3.6023 18 14 1.2358 5.1592 -4.8941 19 1 -0.2152 4.9166 -4.6916 20 1 1.4447 5.8627 -6.1851 21 1 1.9565 3.8609 -4.9156 22 6 4.2395 -0.0311 -0.0049 23 6 5.5967 -0.4175 -0.0118 24 7 5.6579 -1.7185 -0.0152 25 7 4.3640 -2.2530 0.0027 26 6 4.0231 -3.6778 0.0045 27 6 3.4715 -1.2128 0.0017 28 7 2.1476 -1.1479 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6345 2.1416 0.0004 33 1 2.7095 3.6776 -0.0009 34 1 5.0586 4.9678 0.8898 35 1 5.0594 4.9674 -0.8902 36 1 4.1273 8.0521 0.7975 37 1 5.1270 7.4295 -0.5866 38 1 2.1440 8.2924 -0.6241 39 1 3.3492 8.3858 -1.9813 40 1 1.5337 7.9444 -4.4045 41 1 6.4431 0.2533 -0.0132 42 1 3.9390 -4.0326 -1.0228 43 1 4.8038 -4.2377 0.5195 44 1 3.0726 -3.8233 0.5180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038856527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:43 Heat of formation + Delta-G solvation = 128.890112 kcal Electronic energy + Delta-G solvation = -27787.714533 eV Core-core repulsion = 23936.910175 eV Total energy + Delta-G solvation = -3850.804358 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.92488 -39.56807 -38.42935 -37.90245 -34.29915 -34.03077 -32.30392 -32.08375 -31.84777 -28.21163 -27.85787 -27.47638 -26.95138 -24.31606 -23.41079 -22.65780 -21.95055 -21.31051 -20.21078 -19.13763 -17.90130 -17.38131 -17.19652 -16.52902 -16.10125 -15.56414 -15.35868 -14.90463 -14.66652 -14.54025 -14.21485 -14.10171 -13.80677 -13.67661 -13.40273 -13.13494 -12.98250 -12.88984 -12.62317 -12.33990 -11.98875 -11.89175 -11.47945 -11.18785 -11.13829 -11.06831 -10.76692 -10.61491 -10.58838 -10.29810 -9.97840 -9.79334 -9.62725 -9.38246 -8.95507 -8.84072 -8.73117 -8.47213 -6.94349 -5.80870 -3.13673 0.23877 0.99193 1.97975 2.33079 2.93607 3.22738 3.34531 3.41139 3.42360 3.72336 3.86854 4.24177 4.36935 4.43643 4.61052 4.67434 4.92441 4.99356 5.06322 5.19023 5.21853 5.26813 5.34220 5.37354 5.42602 5.48491 5.57266 5.63696 5.76864 5.77310 5.85817 6.00565 6.10922 6.26176 6.33004 6.36272 6.56463 6.61836 6.65279 6.75844 7.20291 7.28387 7.36110 7.55177 7.68091 7.71905 7.93895 8.31554 8.99558 9.66753 10.54439 11.35714 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.003540 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.331276 B = 7908.030103 C = 8915.728187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.198 3.802 3 C -0.178 4.178 4 C 0.003 3.997 5 C 0.553 3.447 6 O -0.534 6.534 7 N -0.700 5.700 8 C 0.122 3.878 9 C 0.125 3.875 10 H 0.051 0.949 11 C -0.155 4.155 12 C 0.159 3.841 13 N -0.602 5.602 14 C -0.221 4.221 15 H 0.078 0.922 16 C -0.005 4.005 17 N -0.918 5.918 18 Si 0.905 3.095 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.281 1.281 22 C -0.188 4.188 23 C 0.102 3.898 24 N -0.246 5.246 25 N -0.396 5.396 26 C 0.115 3.885 27 C 0.312 3.688 28 N -0.494 5.494 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.085 0.915 32 H 0.149 0.851 33 H 0.404 0.596 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.054 0.946 37 H 0.077 0.923 38 H 0.027 0.973 39 H 0.074 0.926 40 H 0.253 0.747 41 H 0.207 0.793 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.072 -14.534 10.646 18.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.048 3.952 3 C -0.201 4.201 4 C -0.011 4.011 5 C 0.338 3.662 6 O -0.412 6.412 7 N -0.350 5.350 8 C -0.002 4.002 9 C 0.017 3.983 10 H 0.068 0.932 11 C -0.194 4.194 12 C 0.034 3.966 13 N -0.329 5.329 14 C -0.349 4.349 15 H 0.096 0.904 16 C -0.202 4.202 17 N -0.565 5.565 18 Si 0.735 3.265 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.207 1.207 22 C -0.198 4.198 23 C -0.093 4.093 24 N -0.060 5.060 25 N -0.187 5.187 26 C -0.026 4.026 27 C 0.072 3.928 28 N -0.210 5.210 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.167 0.833 33 H 0.239 0.761 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.223 0.777 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.172 -16.612 10.305 19.584 hybrid contribution -1.109 0.812 -0.931 1.660 sum 0.063 -15.800 9.375 18.372 Atomic orbital electron populations 1.20833 0.87517 1.04069 1.03978 1.21139 0.96851 0.86395 0.90782 1.22059 0.93215 1.00031 1.04783 1.19970 0.93209 0.92395 0.95481 1.17988 0.87270 0.83305 0.77652 1.90718 1.13123 1.87408 1.49990 1.45893 1.10942 1.05553 1.72625 1.21873 0.94950 0.81575 1.01815 1.22518 0.93067 0.92445 0.90246 0.93214 1.23774 1.00169 0.95854 0.99623 1.22195 0.92100 0.87054 0.95285 1.46072 1.72728 1.02408 1.11650 1.18914 1.33970 0.89250 0.92745 0.90414 1.24745 1.01567 0.95729 0.98127 1.69815 1.51104 1.07476 1.28107 0.86233 0.78779 0.79331 0.82132 1.21567 1.21606 1.20679 1.19264 0.94959 0.93054 1.12573 1.24107 0.96892 0.91622 0.96707 1.76938 0.98593 1.10941 1.19537 1.48300 1.01138 1.05246 1.63991 1.21773 1.02282 0.75315 1.03185 1.18910 0.88813 0.87461 0.97639 1.66249 1.06293 1.30252 1.18248 0.89481 0.90131 0.89662 0.83329 0.76069 0.91719 0.90532 0.92754 0.90446 0.95539 0.90812 0.93649 0.77656 0.91181 0.89406 0.89277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.14 36.01 0.37 -0.53 16 2 C 0.20 2.39 6.78 -82.59 -0.56 1.84 16 3 C -0.18 -2.26 9.22 -39.02 -0.36 -2.62 16 4 C 0.00 0.05 5.93 -104.41 -0.62 -0.57 16 5 C 0.55 9.13 7.79 -12.32 -0.10 9.03 16 6 O -0.53 -9.95 15.14 5.32 0.08 -9.87 16 7 N -0.70 -11.12 5.49 -61.24 -0.34 -11.46 16 8 C 0.12 2.06 5.54 -4.04 -0.02 2.04 16 9 C 0.12 2.25 4.33 -66.86 -0.29 1.96 16 10 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 11 C -0.16 -2.68 7.86 -25.80 -0.20 -2.89 16 12 C 0.16 3.50 7.51 -2.97 -0.02 3.47 16 13 N -0.60 -13.99 3.57 -170.73 -0.61 -14.60 16 14 C -0.22 -5.71 10.51 -15.06 -0.16 -5.87 16 15 H 0.08 1.92 7.80 -52.48 -0.41 1.51 16 16 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 17 N -0.92 -26.27 11.39 55.49 0.63 -25.64 16 18 Si 0.90 21.54 29.55 -169.99 -5.02 16.52 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C -0.19 -2.90 6.02 -106.64 -0.64 -3.54 16 23 C 0.10 1.50 11.29 -17.14 -0.19 1.31 16 24 N -0.25 -3.55 12.44 30.79 0.38 -3.17 16 25 N -0.40 -5.32 4.07 -67.19 -0.27 -5.60 16 26 C 0.12 1.02 11.48 59.84 0.69 1.70 16 27 C 0.31 4.61 8.00 -156.06 -1.25 3.36 16 28 N -0.49 -6.77 10.25 -8.59 -0.09 -6.86 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.08 0.57 8.07 -51.93 -0.42 0.15 16 32 H 0.15 1.58 6.52 -52.49 -0.34 1.24 16 33 H 0.40 5.92 6.61 -40.82 -0.27 5.65 16 34 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 36 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.08 1.33 8.10 -51.93 -0.42 0.91 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 1.83 7.16 -51.93 -0.37 1.45 16 40 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 41 H 0.21 2.82 7.08 -52.49 -0.37 2.45 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 372.20 15.07 5.61 5.61 Total: -1.00 -33.06 372.20 -9.05 -42.11 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.97 Total: 4.50 kcal Atomic # 6 Polarization: 11.93 SS G_CDS: -3.46 Total: 8.47 kcal Atomic # 7 Polarization: -67.04 SS G_CDS: -0.29 Total: -67.33 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.08 Total: -9.87 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.06 -9.05 -42.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038856527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.000 kcal (2) G-P(sol) polarization free energy of solvation -33.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 128.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds