Wall clock time and date at job start Tue Mar 31 2020 05:41:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38691 * 119.16390 * 2 1 4 4 C 1.39301 * 119.36487 * 179.97438 * 3 2 1 5 5 C 1.47872 * 121.09115 * 179.97438 * 4 3 2 6 6 O 1.21548 * 119.99525 * 180.02562 * 5 4 3 7 7 N 1.34771 * 119.99760 * 0.02562 * 5 4 3 8 8 C 1.46505 * 119.99622 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.47212 * 179.97438 * 8 7 5 10 10 H 1.09007 * 112.96750 * 53.32018 * 9 8 7 11 11 C 1.53946 * 113.77378 * 184.99939 * 9 8 7 12 12 C 1.53945 * 86.29134 * 137.90550 * 11 9 8 13 13 N 1.47581 * 86.11961 * 336.39637 * 12 11 9 14 14 C 1.36929 * 134.49167 * 204.63911 * 13 12 11 15 15 H 1.08003 * 120.00188 * 179.97438 * 14 13 12 16 16 C 1.38813 * 120.00102 * 0.02562 * 14 13 12 17 17 N 1.31623 * 119.99809 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99971 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 89.99513 * 18 16 14 20 20 H 1.48508 * 109.46914 * 209.99568 * 18 16 14 21 21 H 1.48502 * 109.47301 * 329.99198 * 18 16 14 22 22 C 1.41271 * 117.81837 * 0.27450 * 4 3 2 23 23 C 1.41108 * 133.90933 * 179.68132 * 22 4 3 24 24 N 1.30246 * 108.58340 * 180.02562 * 23 22 4 25 25 N 1.40005 * 109.75117 * 359.41347 * 24 23 22 26 26 C 1.46496 * 125.90478 * 179.97438 * 25 24 23 27 27 C 1.37072 * 108.17871 * 0.70511 * 25 24 23 28 28 N 1.31450 * 119.16442 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47102 * 90.00172 * 1 2 3 30 30 H 1.09000 * 109.47326 * 210.00112 * 1 2 3 31 31 H 1.08996 * 109.47636 * 329.99866 * 1 2 3 32 32 H 1.08002 * 120.32394 * 0.02562 * 3 2 1 33 33 H 0.96996 * 120.00772 * 359.97438 * 7 5 4 34 34 H 1.09002 * 109.47068 * 299.99729 * 8 7 5 35 35 H 1.09001 * 109.47372 * 59.99816 * 8 7 5 36 36 H 1.09003 * 113.74151 * 252.25618 * 11 9 8 37 37 H 1.09006 * 113.73813 * 23.45283 * 11 9 8 38 38 H 1.08999 * 113.76275 * 90.69660 * 12 11 9 39 39 H 1.08993 * 113.76995 * 221.97658 * 12 11 9 40 40 H 0.96998 * 119.99367 * 180.02562 * 17 16 14 41 41 H 1.07997 * 125.71244 * 0.07319 * 23 22 4 42 42 H 1.09006 * 109.47311 * 270.90007 * 26 25 24 43 43 H 1.09005 * 109.47632 * 30.90478 * 26 25 24 44 44 H 1.09006 * 109.47313 * 150.90468 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1829 1.2111 0.0000 4 6 3.5759 1.2160 0.0005 5 6 4.3350 2.4849 0.0000 6 8 5.5504 2.4660 0.0000 7 7 3.6793 3.6624 -0.0005 8 6 4.4315 4.9196 -0.0005 9 6 3.4555 6.0979 -0.0018 10 1 2.7219 6.0433 0.8026 11 6 4.1406 7.4710 -0.1246 12 6 3.0099 7.8359 -1.1036 13 7 2.8698 6.3836 -1.3259 14 6 2.3893 5.6115 -2.3496 15 1 2.3982 4.5349 -2.2641 16 6 1.8919 6.2125 -3.4978 17 7 1.8816 7.5245 -3.6023 18 14 1.2358 5.1592 -4.8941 19 1 -0.2152 4.9166 -4.6916 20 1 1.4447 5.8627 -6.1851 21 1 1.9565 3.8609 -4.9156 22 6 4.2395 -0.0311 -0.0049 23 6 5.5967 -0.4175 -0.0118 24 7 5.6579 -1.7185 -0.0152 25 7 4.3640 -2.2530 0.0027 26 6 4.0231 -3.6778 0.0045 27 6 3.4715 -1.2128 0.0017 28 7 2.1476 -1.1479 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 1.6345 2.1416 0.0004 33 1 2.7095 3.6776 -0.0009 34 1 5.0586 4.9678 0.8898 35 1 5.0594 4.9674 -0.8902 36 1 4.1273 8.0521 0.7975 37 1 5.1270 7.4295 -0.5866 38 1 2.1440 8.2924 -0.6241 39 1 3.3492 8.3858 -1.9813 40 1 1.5337 7.9444 -4.4045 41 1 6.4431 0.2533 -0.0132 42 1 3.9390 -4.0326 -1.0228 43 1 4.8038 -4.2377 0.5195 44 1 3.0726 -3.8233 0.5180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038856527.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:42 Heat of formation + Delta-G solvation = 107.209166 kcal Electronic energy + Delta-G solvation = -27788.654690 eV Core-core repulsion = 23936.910175 eV Total energy + Delta-G solvation = -3851.744515 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.96145 -40.85756 -39.64096 -39.29286 -35.67045 -35.03496 -34.18014 -33.09269 -32.81829 -29.88988 -29.34670 -28.44659 -27.83231 -25.48402 -25.24716 -23.89001 -23.11213 -22.43091 -21.47529 -20.72605 -19.06765 -18.62010 -18.30552 -18.04842 -17.16557 -16.99248 -16.84984 -16.20095 -16.01060 -15.69986 -15.52117 -15.31462 -15.04172 -14.80469 -14.72306 -14.54383 -13.85063 -13.77296 -13.56757 -13.38330 -13.25188 -13.04987 -12.92325 -12.77225 -12.65817 -12.53753 -12.30737 -12.19840 -11.84476 -11.64876 -11.56839 -11.45082 -11.16891 -10.78829 -10.60060 -10.13162 -9.92278 -9.48504 -8.83968 -7.83144 -5.14048 -0.84084 -0.02760 1.05422 1.22615 1.45576 1.47993 1.54361 1.75543 1.98646 2.49908 2.63251 2.95783 3.20816 3.33689 3.40123 3.46064 3.59823 3.67504 3.99425 4.04622 4.19293 4.27695 4.29911 4.35601 4.40224 4.44227 4.60593 4.65719 4.68481 4.75791 4.82486 4.85531 4.91074 5.00040 5.11348 5.13926 5.21270 5.35200 5.38889 5.41205 5.66140 5.72804 5.79761 6.02392 6.23481 6.42956 6.70454 6.99353 7.05568 7.70122 8.64505 9.33834 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.003540 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.331276 B = 7908.030103 C = 8915.728187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.198 3.802 3 C -0.169 4.169 4 C -0.015 4.015 5 C 0.554 3.446 6 O -0.561 6.561 7 N -0.696 5.696 8 C 0.131 3.869 9 C 0.133 3.867 10 H 0.077 0.923 11 C -0.131 4.131 12 C 0.149 3.851 13 N -0.629 5.629 14 C -0.209 4.209 15 H 0.087 0.913 16 C -0.069 4.069 17 N -0.954 5.954 18 Si 0.961 3.039 19 H -0.281 1.281 20 H -0.303 1.303 21 H -0.276 1.276 22 C -0.212 4.212 23 C 0.090 3.910 24 N -0.255 5.255 25 N -0.395 5.395 26 C 0.106 3.894 27 C 0.296 3.704 28 N -0.498 5.498 29 H 0.096 0.904 30 H 0.090 0.910 31 H 0.107 0.893 32 H 0.171 0.829 33 H 0.410 0.590 34 H 0.088 0.912 35 H 0.047 0.953 36 H 0.094 0.906 37 H 0.077 0.923 38 H 0.023 0.977 39 H 0.036 0.964 40 H 0.244 0.756 41 H 0.207 0.793 42 H 0.081 0.919 43 H 0.105 0.895 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.100 -15.970 12.204 20.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.048 3.952 3 C -0.191 4.191 4 C -0.028 4.028 5 C 0.340 3.660 6 O -0.441 6.441 7 N -0.346 5.346 8 C 0.006 3.994 9 C 0.027 3.973 10 H 0.094 0.906 11 C -0.170 4.170 12 C 0.024 3.976 13 N -0.355 5.355 14 C -0.338 4.338 15 H 0.104 0.896 16 C -0.261 4.261 17 N -0.604 5.604 18 Si 0.791 3.209 19 H -0.208 1.208 20 H -0.230 1.230 21 H -0.202 1.202 22 C -0.223 4.223 23 C -0.104 4.104 24 N -0.070 5.070 25 N -0.186 5.186 26 C -0.033 4.033 27 C 0.056 3.944 28 N -0.215 5.215 29 H 0.114 0.886 30 H 0.109 0.891 31 H 0.125 0.875 32 H 0.188 0.812 33 H 0.248 0.752 34 H 0.106 0.894 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.096 0.904 38 H 0.041 0.959 39 H 0.055 0.945 40 H 0.053 0.947 41 H 0.223 0.777 42 H 0.100 0.900 43 H 0.123 0.877 44 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.005 -18.089 11.904 21.655 hybrid contribution -0.761 1.205 -1.338 1.955 sum -0.756 -16.885 10.566 19.932 Atomic orbital electron populations 1.20983 0.84560 1.05693 1.04936 1.21819 0.98596 0.85702 0.89119 1.22365 0.92332 1.01327 1.03116 1.19905 0.94119 0.91427 0.97384 1.18219 0.87048 0.83855 0.76882 1.90700 1.14358 1.87818 1.51225 1.45813 1.11228 1.05121 1.72471 1.21679 0.94527 0.81665 1.01502 1.22694 0.93157 0.93207 0.88212 0.90598 1.23571 0.98247 0.95397 0.99782 1.22164 0.93850 0.86363 0.95242 1.46413 1.72649 1.03094 1.13370 1.19284 1.31314 0.89992 0.93166 0.89556 1.25442 1.03466 0.96639 1.00584 1.69994 1.53286 1.08862 1.28228 0.85332 0.78506 0.77879 0.79196 1.20832 1.23009 1.20169 1.19480 0.95351 0.93740 1.13725 1.24133 0.97024 0.91882 0.97402 1.76868 0.99531 1.10855 1.19722 1.48682 1.00520 1.06471 1.62952 1.22123 1.03537 0.73228 1.04417 1.19152 0.89349 0.87690 0.98189 1.66384 1.05669 1.30974 1.18425 0.88597 0.89148 0.87476 0.81207 0.75248 0.89442 0.93494 0.88757 0.90428 0.95875 0.94511 0.94699 0.77665 0.90041 0.87662 0.88037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.38 10.14 71.24 0.72 -0.66 16 2 C 0.20 4.29 6.78 42.72 0.29 4.58 16 3 C -0.17 -3.91 9.22 22.63 0.21 -3.70 16 4 C -0.01 -0.42 5.93 -19.72 -0.12 -0.54 16 5 C 0.55 17.82 7.79 86.80 0.68 18.50 16 6 O -0.56 -20.87 15.14 -3.87 -0.06 -20.93 16 7 N -0.70 -20.83 5.49 -465.95 -2.56 -23.39 16 8 C 0.13 4.16 5.54 86.38 0.48 4.64 16 9 C 0.13 4.45 4.33 45.09 0.20 4.64 16 10 H 0.08 2.26 8.14 -2.38 -0.02 2.24 16 11 C -0.13 -4.22 7.86 31.25 0.25 -3.98 16 12 C 0.15 6.52 7.51 86.48 0.65 7.17 16 13 N -0.63 -28.63 3.57 -694.07 -2.48 -31.11 16 14 C -0.21 -10.65 10.51 84.04 0.88 -9.77 16 15 H 0.09 4.14 7.80 -2.91 -0.02 4.12 16 16 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 17 N -0.95 -55.92 11.39 21.65 0.25 -55.68 16 18 Si 0.96 44.59 29.55 68.60 2.03 46.61 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 21 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 22 C -0.21 -6.50 6.02 -21.17 -0.13 -6.63 16 23 C 0.09 2.70 11.29 85.63 0.97 3.67 16 24 N -0.26 -7.32 12.44 -56.51 -0.70 -8.02 16 25 N -0.40 -10.26 4.07 -366.48 -1.49 -11.75 16 26 C 0.11 1.69 11.48 127.77 1.47 3.16 16 27 C 0.30 8.47 8.00 134.11 1.07 9.55 16 28 N -0.50 -12.73 10.25 -181.10 -1.86 -14.59 16 29 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.09 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.11 0.97 8.07 -2.39 -0.02 0.95 16 32 H 0.17 3.07 6.52 -2.91 -0.02 3.05 16 33 H 0.41 10.99 6.61 -92.71 -0.61 10.37 16 34 H 0.09 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.08 2.51 8.10 -2.38 -0.02 2.49 16 38 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.04 1.87 7.16 -2.39 -0.02 1.85 16 40 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 41 H 0.21 5.88 7.08 -2.91 -0.02 5.86 16 42 H 0.08 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 44 H 0.10 1.36 8.14 -2.38 -0.02 1.34 16 Total: -1.00 -72.87 372.20 1.63 -71.24 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.42 Total: 20.28 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 8.08 Total: 27.34 kcal Atomic # 7 Polarization: -135.70 SS G_CDS: -8.84 Total: -144.54 kcal Atomic # 8 Polarization: -20.87 SS G_CDS: -0.06 Total: -20.93 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -72.87 1.63 -71.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038856527.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.449 kcal (2) G-P(sol) polarization free energy of solvation -72.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds