Wall clock time and date at job start Tue Mar 31 2020 05:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38501 * 125.48132 * 2 1 4 4 C 1.39069 * 107.67196 * 179.97438 * 3 2 1 5 5 N 1.33700 * 132.55956 * 180.02562 * 4 3 2 6 6 C 1.31139 * 121.18459 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.76696 * 180.02562 * 6 5 4 8 8 C 1.40134 * 120.46319 * 359.97438 * 6 5 4 9 9 C 1.36882 * 119.26133 * 0.02562 * 8 6 5 10 10 C 1.47498 * 120.61147 * 179.97438 * 9 8 6 11 11 O 1.21583 * 120.00369 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99625 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99596 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47199 * 180.02562 * 13 12 10 15 15 H 1.09001 * 112.96299 * 53.31851 * 14 13 12 16 16 C 1.53940 * 113.77097 * 185.00283 * 14 13 12 17 17 C 1.53941 * 86.29017 * 137.90545 * 16 14 13 18 18 N 1.47574 * 86.11873 * 336.39075 * 17 16 14 19 19 C 1.36943 * 134.49471 * 204.63912 * 18 17 16 20 20 H 1.08002 * 119.99605 * 173.48640 * 19 18 17 21 21 C 1.38807 * 119.99946 * 353.48125 * 19 18 17 22 22 N 1.31620 * 120.00067 * 5.07826 * 21 19 18 23 23 Si 1.86794 * 120.00159 * 185.06816 * 21 19 18 24 24 H 1.48501 * 109.47178 * 94.98881 * 23 21 19 25 25 H 1.48499 * 109.47634 * 214.99236 * 23 21 19 26 26 H 1.48500 * 109.47137 * 334.99258 * 23 21 19 27 27 N 1.37299 * 106.80302 * 0.02562 * 4 3 2 28 28 N 1.31524 * 125.48333 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47432 * 89.99916 * 1 2 3 30 30 H 1.09003 * 109.46918 * 209.99551 * 1 2 3 31 31 H 1.09000 * 109.47413 * 329.99250 * 1 2 3 32 32 H 1.08003 * 126.16696 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.46991 * 90.00165 * 7 6 5 34 34 H 1.09003 * 109.47554 * 209.99850 * 7 6 5 35 35 H 1.09001 * 109.47187 * 330.00200 * 7 6 5 36 36 H 1.08008 * 120.36807 * 180.02562 * 8 6 5 37 37 H 0.97001 * 120.00308 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47407 * 300.00275 * 13 12 10 39 39 H 1.09008 * 109.47167 * 60.00062 * 13 12 10 40 40 H 1.09000 * 113.74159 * 252.25227 * 16 14 13 41 41 H 1.09003 * 113.74273 * 23.45675 * 16 14 13 42 42 H 1.09000 * 113.77321 * 90.69731 * 17 16 14 43 43 H 1.09003 * 113.77120 * 221.97458 * 17 16 14 44 44 H 0.97001 * 120.00286 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7025 0.0006 5 7 4.7971 1.3635 0.0013 6 6 5.9420 0.7240 0.0023 7 6 7.2331 1.5013 0.0036 8 6 5.9733 -0.6769 0.0031 9 6 4.7943 -1.3725 0.0024 10 6 4.7925 -2.8475 0.0027 11 8 5.8446 -3.4568 0.0032 12 7 3.6244 -3.5199 0.0026 13 6 3.6226 -4.9848 0.0023 14 6 2.1794 -5.4931 0.0015 15 1 1.5795 -5.0687 -0.8036 16 6 2.0603 -7.0230 0.1240 17 6 0.9016 -6.7543 1.1014 18 7 1.5283 -5.4370 1.3248 19 6 1.5122 -4.5278 2.3487 20 1 2.1542 -3.6601 2.3104 21 6 0.6707 -4.7213 3.4355 22 7 -0.0375 -5.8266 3.5309 23 14 0.5435 -3.4131 4.7628 24 1 -0.6132 -2.5274 4.4757 25 1 0.3522 -4.0648 6.0834 26 1 1.7906 -2.6072 4.7846 27 7 3.6108 -0.6703 0.0004 28 7 2.2704 -1.0710 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.9708 2.1529 -0.0004 33 1 7.5434 1.6885 1.0316 34 1 8.0039 0.9263 -0.5096 35 1 7.0858 2.4513 -0.5102 36 1 6.9171 -1.2020 0.0043 37 1 2.7849 -3.0338 0.0026 38 1 4.1360 -5.3487 -0.8876 39 1 4.1359 -5.3490 0.8923 40 1 1.7512 -7.5144 -0.7985 41 1 2.9268 -7.4950 0.5873 42 1 -0.0751 -6.7003 0.6206 43 1 0.9083 -7.4005 1.9791 44 1 -0.6258 -5.9617 4.2902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039026432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:36 Heat of formation + Delta-G solvation = 138.823098 kcal Electronic energy + Delta-G solvation = -28462.997020 eV Core-core repulsion = 24612.623388 eV Total energy + Delta-G solvation = -3850.373632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46883 -39.63535 -38.53824 -37.90047 -34.63219 -34.10492 -32.69366 -32.18255 -30.54960 -28.63456 -28.22154 -27.79164 -27.57588 -24.65638 -23.36828 -22.62400 -22.07888 -20.77765 -20.53463 -19.20834 -18.52894 -17.24219 -16.85468 -16.46273 -16.39331 -15.68671 -15.33078 -15.11215 -14.63057 -14.46251 -14.18563 -14.02331 -13.74950 -13.40038 -13.30545 -13.18615 -13.05901 -12.97075 -12.68063 -12.32013 -11.98534 -11.80776 -11.47913 -11.26443 -11.07149 -11.05356 -10.99888 -10.76631 -10.59511 -10.39210 -10.05540 -9.85707 -9.75335 -9.43951 -9.35457 -8.83012 -8.73251 -8.02796 -6.88466 -5.77964 -3.08896 -0.00445 0.69154 1.82303 2.32681 2.84699 3.03060 3.34725 3.36643 3.43180 3.44253 3.51926 3.90822 4.28408 4.44160 4.57715 4.78179 4.95263 5.05035 5.12320 5.20840 5.29744 5.35513 5.39038 5.40862 5.58213 5.59019 5.61250 5.66400 5.67293 5.84286 5.88209 5.96698 5.98265 6.23538 6.31310 6.36380 6.48189 6.56827 6.62005 6.76042 7.24958 7.31858 7.37751 7.43168 7.59426 7.70123 7.97968 8.23544 9.05240 9.70927 10.59157 11.39358 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.004546 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.012507 B = 6157.106471 C = 7223.636556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.125 3.875 3 C -0.257 4.257 4 C 0.261 3.739 5 N -0.455 5.455 6 C 0.199 3.801 7 C -0.105 4.105 8 C -0.159 4.159 9 C 0.155 3.845 10 C 0.551 3.449 11 O -0.529 6.529 12 N -0.687 5.687 13 C 0.118 3.882 14 C 0.125 3.875 15 H 0.050 0.950 16 C -0.155 4.155 17 C 0.163 3.837 18 N -0.600 5.600 19 C -0.214 4.214 20 H 0.076 0.924 21 C -0.004 4.004 22 N -0.917 5.917 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.284 1.284 27 N -0.307 5.307 28 N -0.304 5.304 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.179 0.821 37 H 0.422 0.578 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.070 0.930 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.607 12.024 -10.437 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.288 4.288 4 C 0.034 3.966 5 N -0.168 5.168 6 C 0.035 3.965 7 C -0.162 4.162 8 C -0.185 4.185 9 C 0.037 3.963 10 C 0.333 3.667 11 O -0.406 6.406 12 N -0.341 5.341 13 C -0.006 4.006 14 C 0.017 3.983 15 H 0.068 0.932 16 C -0.194 4.194 17 C 0.038 3.962 18 N -0.326 5.326 19 C -0.342 4.342 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.564 5.564 23 Si 0.732 3.268 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.209 1.209 27 N -0.081 5.081 28 N -0.131 5.131 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.181 0.819 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.196 0.804 37 H 0.265 0.735 38 H 0.084 0.916 39 H 0.096 0.904 40 H 0.073 0.927 41 H 0.096 0.904 42 H 0.046 0.954 43 H 0.088 0.912 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.837 11.273 -10.108 17.531 hybrid contribution -0.576 1.067 0.866 1.490 sum 8.261 12.340 -9.242 17.491 Atomic orbital electron populations 1.20374 0.85170 1.04683 1.03670 1.22288 0.97490 0.89567 0.93870 1.20851 0.87156 1.00285 1.20466 1.20651 0.94607 0.80036 1.01344 1.67761 0.95985 1.37447 1.15655 1.21868 0.94308 0.90640 0.89725 1.20829 0.90649 1.00417 1.04288 1.21926 0.98058 0.94612 1.03885 1.20911 0.83034 0.93711 0.98666 1.17528 0.85447 0.84494 0.79217 1.90818 1.31056 1.67559 1.51213 1.46395 1.09013 1.08995 1.69686 1.21960 0.99289 0.77572 1.01802 1.22500 0.90814 0.94449 0.90518 0.93247 1.23794 1.01400 0.94526 0.99693 1.22130 0.92024 0.86990 0.95103 1.46073 1.55281 1.19953 1.11298 1.18915 1.18072 1.01639 0.95558 0.90615 1.24736 0.98919 0.97678 0.98715 1.69829 1.30794 1.24725 1.31081 0.86261 0.77746 0.81266 0.81549 1.21518 1.21656 1.20929 1.47367 1.05842 1.07290 1.47576 1.77461 0.82243 1.21611 1.31811 0.89695 0.89404 0.89718 0.81860 0.89017 0.89384 0.89481 0.80403 0.73545 0.91589 0.90418 0.92691 0.90444 0.95359 0.91159 0.93712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.43 36.00 0.38 -0.56 16 2 C 0.13 1.89 7.15 -82.63 -0.59 1.30 16 3 C -0.26 -3.66 10.82 -39.18 -0.42 -4.08 16 4 C 0.26 4.11 7.93 -155.56 -1.23 2.88 16 5 N -0.46 -6.34 10.36 -8.48 -0.09 -6.42 16 6 C 0.20 2.27 6.82 -82.18 -0.56 1.71 16 7 C -0.10 -0.68 10.18 36.00 0.37 -0.32 16 8 C -0.16 -2.01 9.27 -39.36 -0.37 -2.38 16 9 C 0.15 2.52 6.82 -81.99 -0.56 1.96 16 10 C 0.55 10.10 7.79 -12.49 -0.10 10.00 16 11 O -0.53 -10.21 16.36 5.29 0.09 -10.12 16 12 N -0.69 -13.19 5.51 -61.36 -0.34 -13.53 16 13 C 0.12 2.22 5.54 -4.04 -0.02 2.20 16 14 C 0.12 2.49 4.33 -66.86 -0.29 2.20 16 15 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 16 C -0.16 -2.84 7.86 -25.81 -0.20 -3.04 16 17 C 0.16 3.75 7.42 -2.98 -0.02 3.73 16 18 N -0.60 -14.92 3.57 -170.77 -0.61 -15.53 16 19 C -0.21 -5.93 10.50 -15.06 -0.16 -6.09 16 20 H 0.08 2.12 7.79 -52.49 -0.41 1.71 16 21 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 22 N -0.92 -27.06 11.51 55.49 0.64 -26.42 16 23 Si 0.90 22.66 29.56 -169.99 -5.02 17.64 16 24 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 25 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 26 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 27 N -0.31 -5.25 3.94 -8.87 -0.03 -5.29 16 28 N -0.30 -5.44 9.92 33.51 0.33 -5.10 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.16 1.85 8.06 -52.48 -0.42 1.43 16 33 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 0.39 8.09 -51.93 -0.42 -0.03 16 35 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.18 1.82 7.65 -52.48 -0.40 1.42 16 37 H 0.42 8.43 5.50 -40.82 -0.22 8.20 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.08 1.62 8.14 -51.92 -0.42 1.19 16 40 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 41 H 0.08 1.38 8.10 -51.93 -0.42 0.95 16 42 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 1.78 7.36 -51.93 -0.38 1.40 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 372.69 15.07 5.62 5.62 Total: -1.00 -34.14 372.69 -9.34 -43.49 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: -6.04 Total: 6.36 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: -3.88 Total: 9.31 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -0.10 Total: -72.29 kcal Atomic # 8 Polarization: -10.21 SS G_CDS: 0.09 Total: -10.12 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.14 -9.34 -43.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039026432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.310 kcal (2) G-P(sol) polarization free energy of solvation -34.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 138.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds