Wall clock time and date at job start Tue Mar 31 2020 05:42:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38501 * 125.48132 * 2 1 4 4 C 1.39069 * 107.67196 * 179.97438 * 3 2 1 5 5 N 1.33700 * 132.55956 * 180.02562 * 4 3 2 6 6 C 1.31139 * 121.18459 * 179.97438 * 5 4 3 7 7 C 1.50698 * 119.76696 * 180.02562 * 6 5 4 8 8 C 1.40134 * 120.46319 * 359.97438 * 6 5 4 9 9 C 1.36882 * 119.26133 * 0.02562 * 8 6 5 10 10 C 1.47498 * 120.61147 * 179.97438 * 9 8 6 11 11 O 1.21583 * 120.00369 * 359.97438 * 10 9 8 12 12 N 1.34780 * 119.99625 * 179.97438 * 10 9 8 13 13 C 1.46500 * 119.99596 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47199 * 180.02562 * 13 12 10 15 15 H 1.09001 * 112.96299 * 53.31851 * 14 13 12 16 16 C 1.53940 * 113.77097 * 185.00283 * 14 13 12 17 17 C 1.53941 * 86.29017 * 137.90545 * 16 14 13 18 18 N 1.47574 * 86.11873 * 336.39075 * 17 16 14 19 19 C 1.36943 * 134.49471 * 204.63912 * 18 17 16 20 20 H 1.08002 * 119.99605 * 173.48640 * 19 18 17 21 21 C 1.38807 * 119.99946 * 353.48125 * 19 18 17 22 22 N 1.31620 * 120.00067 * 5.07826 * 21 19 18 23 23 Si 1.86794 * 120.00159 * 185.06816 * 21 19 18 24 24 H 1.48501 * 109.47178 * 94.98881 * 23 21 19 25 25 H 1.48499 * 109.47634 * 214.99236 * 23 21 19 26 26 H 1.48500 * 109.47137 * 334.99258 * 23 21 19 27 27 N 1.37299 * 106.80302 * 0.02562 * 4 3 2 28 28 N 1.31524 * 125.48333 * 180.02562 * 2 1 3 29 29 H 1.08999 * 109.47432 * 89.99916 * 1 2 3 30 30 H 1.09003 * 109.46918 * 209.99551 * 1 2 3 31 31 H 1.09000 * 109.47413 * 329.99250 * 1 2 3 32 32 H 1.08003 * 126.16696 * 359.97438 * 3 2 1 33 33 H 1.09005 * 109.46991 * 90.00165 * 7 6 5 34 34 H 1.09003 * 109.47554 * 209.99850 * 7 6 5 35 35 H 1.09001 * 109.47187 * 330.00200 * 7 6 5 36 36 H 1.08008 * 120.36807 * 180.02562 * 8 6 5 37 37 H 0.97001 * 120.00308 * 359.97438 * 12 10 9 38 38 H 1.08999 * 109.47407 * 300.00275 * 13 12 10 39 39 H 1.09008 * 109.47167 * 60.00062 * 13 12 10 40 40 H 1.09000 * 113.74159 * 252.25227 * 16 14 13 41 41 H 1.09003 * 113.74273 * 23.45675 * 16 14 13 42 42 H 1.09000 * 113.77321 * 90.69731 * 17 16 14 43 43 H 1.09003 * 113.77120 * 221.97458 * 17 16 14 44 44 H 0.97001 * 120.00286 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7025 0.0006 5 7 4.7971 1.3635 0.0013 6 6 5.9420 0.7240 0.0023 7 6 7.2331 1.5013 0.0036 8 6 5.9733 -0.6769 0.0031 9 6 4.7943 -1.3725 0.0024 10 6 4.7925 -2.8475 0.0027 11 8 5.8446 -3.4568 0.0032 12 7 3.6244 -3.5199 0.0026 13 6 3.6226 -4.9848 0.0023 14 6 2.1794 -5.4931 0.0015 15 1 1.5795 -5.0687 -0.8036 16 6 2.0603 -7.0230 0.1240 17 6 0.9016 -6.7543 1.1014 18 7 1.5283 -5.4370 1.3248 19 6 1.5122 -4.5278 2.3487 20 1 2.1542 -3.6601 2.3104 21 6 0.6707 -4.7213 3.4355 22 7 -0.0375 -5.8266 3.5309 23 14 0.5435 -3.4131 4.7628 24 1 -0.6132 -2.5274 4.4757 25 1 0.3522 -4.0648 6.0834 26 1 1.7906 -2.6072 4.7846 27 7 3.6108 -0.6703 0.0004 28 7 2.2704 -1.0710 -0.0005 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8901 0.5138 31 1 -0.3634 0.8899 0.5139 32 1 1.9708 2.1529 -0.0004 33 1 7.5434 1.6885 1.0316 34 1 8.0039 0.9263 -0.5096 35 1 7.0858 2.4513 -0.5102 36 1 6.9171 -1.2020 0.0043 37 1 2.7849 -3.0338 0.0026 38 1 4.1360 -5.3487 -0.8876 39 1 4.1359 -5.3490 0.8923 40 1 1.7512 -7.5144 -0.7985 41 1 2.9268 -7.4950 0.5873 42 1 -0.0751 -6.7003 0.6206 43 1 0.9083 -7.4005 1.9791 44 1 -0.6258 -5.9617 4.2902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039026432.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:35 Heat of formation + Delta-G solvation = 116.335457 kcal Electronic energy + Delta-G solvation = -28463.972157 eV Core-core repulsion = 24612.623388 eV Total energy + Delta-G solvation = -3851.348769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.56714 -41.04222 -39.81338 -39.38083 -35.94268 -35.40332 -34.25853 -33.67709 -31.49352 -30.05361 -29.68762 -29.40457 -28.52197 -25.92912 -25.33470 -23.62714 -23.61153 -22.05006 -21.74092 -20.91701 -19.80639 -18.71085 -18.16264 -17.82909 -17.60545 -17.14665 -17.10891 -16.36076 -16.19790 -15.80050 -15.59211 -15.27123 -14.99668 -14.90023 -14.65306 -14.28753 -14.03420 -13.95168 -13.71357 -13.39245 -13.34235 -13.12163 -13.00134 -12.81154 -12.68028 -12.65325 -12.35539 -12.24070 -12.14931 -11.98814 -11.77198 -11.55140 -11.29062 -11.01357 -10.88522 -10.44344 -10.26843 -9.13923 -8.91135 -7.93549 -5.23140 -1.11414 -0.34484 0.73293 1.15013 1.34466 1.35147 1.42867 1.60886 1.73404 2.23603 2.40093 2.57686 2.77077 3.13668 3.26952 3.37973 3.67103 3.73408 3.87883 3.94647 4.00947 4.11590 4.25482 4.33258 4.48840 4.51084 4.63092 4.64629 4.73624 4.75099 4.79085 4.81070 4.82185 5.00051 5.02297 5.02380 5.16391 5.21919 5.29281 5.34752 5.45549 5.56584 5.68810 5.93751 6.11597 6.33110 6.40822 6.78214 6.92668 7.59692 8.55280 9.23661 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011206 B = 0.004546 C = 0.003875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.012507 B = 6157.106471 C = 7223.636556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.115 3.885 3 C -0.258 4.258 4 C 0.243 3.757 5 N -0.464 5.464 6 C 0.206 3.794 7 C -0.102 4.102 8 C -0.132 4.132 9 C 0.114 3.886 10 C 0.551 3.449 11 O -0.545 6.545 12 N -0.698 5.698 13 C 0.125 3.875 14 C 0.127 3.873 15 H 0.060 0.940 16 C -0.125 4.125 17 C 0.155 3.845 18 N -0.627 5.627 19 C -0.207 4.207 20 H 0.066 0.934 21 C -0.059 4.059 22 N -0.946 5.946 23 Si 0.956 3.044 24 H -0.282 1.282 25 H -0.291 1.291 26 H -0.286 1.286 27 N -0.320 5.320 28 N -0.349 5.349 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.190 0.810 33 H 0.109 0.891 34 H 0.116 0.884 35 H 0.096 0.904 36 H 0.204 0.796 37 H 0.418 0.582 38 H 0.093 0.907 39 H 0.054 0.946 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.022 0.978 43 H 0.039 0.961 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.411 13.801 -11.695 20.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.041 4.041 3 C -0.288 4.288 4 C 0.016 3.984 5 N -0.178 5.178 6 C 0.042 3.958 7 C -0.159 4.159 8 C -0.157 4.157 9 C -0.003 4.003 10 C 0.335 3.665 11 O -0.424 6.424 12 N -0.351 5.351 13 C 0.001 3.999 14 C 0.021 3.979 15 H 0.078 0.922 16 C -0.163 4.163 17 C 0.030 3.970 18 N -0.353 5.353 19 C -0.336 4.336 20 H 0.084 0.916 21 C -0.253 4.253 22 N -0.595 5.595 23 Si 0.786 3.214 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.212 1.212 27 N -0.094 5.094 28 N -0.177 5.177 29 H 0.124 0.876 30 H 0.083 0.917 31 H 0.129 0.871 32 H 0.207 0.793 33 H 0.128 0.872 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.221 0.779 37 H 0.260 0.740 38 H 0.111 0.889 39 H 0.073 0.927 40 H 0.115 0.885 41 H 0.103 0.897 42 H 0.040 0.960 43 H 0.058 0.942 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.657 13.055 -11.396 20.344 hybrid contribution -0.994 0.589 1.184 1.654 sum 9.664 13.644 -10.212 19.592 Atomic orbital electron populations 1.20496 0.83226 1.04750 1.05047 1.22837 0.98742 0.89368 0.93203 1.21222 0.86630 1.01192 1.19778 1.21134 0.95846 0.79782 1.01673 1.67898 0.96147 1.37366 1.16409 1.22716 0.95378 0.90450 0.87303 1.21068 0.88414 1.00540 1.05843 1.22441 0.97732 0.95360 1.00212 1.20923 0.84191 0.92823 1.02360 1.17795 0.84850 0.85576 0.78302 1.90786 1.31233 1.68358 1.52051 1.46489 1.09345 1.09037 1.70274 1.21817 0.98313 0.77879 1.01907 1.22669 0.91018 0.95882 0.88320 0.92223 1.23567 0.99231 0.93585 0.99964 1.22117 0.93576 0.86041 0.95266 1.46400 1.55939 1.20194 1.12784 1.19029 1.16898 1.01303 0.96346 0.91622 1.25364 0.99602 0.99435 1.00856 1.69974 1.31877 1.26096 1.31592 0.85402 0.77485 0.79210 0.79331 1.20925 1.21749 1.21232 1.47393 1.05638 1.07779 1.48544 1.77354 0.83182 1.23411 1.33776 0.87618 0.91749 0.87057 0.79269 0.87246 0.86543 0.88562 0.77902 0.74002 0.88905 0.92739 0.88491 0.89695 0.95975 0.94225 0.94328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.75 10.43 71.23 0.74 -1.00 16 2 C 0.12 3.49 7.15 42.67 0.31 3.79 16 3 C -0.26 -7.14 10.82 22.53 0.24 -6.89 16 4 C 0.24 7.48 7.93 133.23 1.06 8.54 16 5 N -0.46 -12.10 10.36 -180.73 -1.87 -13.97 16 6 C 0.21 4.14 6.82 43.12 0.29 4.44 16 7 C -0.10 -0.91 10.18 71.24 0.73 -0.18 16 8 C -0.13 -3.08 9.27 22.41 0.21 -2.87 16 9 C 0.11 3.67 6.82 40.36 0.28 3.94 16 10 C 0.55 20.23 7.79 86.68 0.68 20.91 16 11 O -0.55 -20.77 16.36 -3.98 -0.07 -20.84 16 12 N -0.70 -27.12 5.51 -466.29 -2.57 -29.68 16 13 C 0.12 4.67 5.54 86.38 0.48 5.14 16 14 C 0.13 5.01 4.33 45.09 0.20 5.20 16 15 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 16 C -0.12 -4.36 7.86 31.25 0.25 -4.11 16 17 C 0.16 7.23 7.42 86.48 0.64 7.88 16 18 N -0.63 -31.68 3.57 -694.19 -2.48 -34.16 16 19 C -0.21 -11.75 10.50 84.03 0.88 -10.87 16 20 H 0.07 3.80 7.79 -2.91 -0.02 3.77 16 21 C -0.06 -3.45 5.50 84.86 0.47 -2.99 16 22 N -0.95 -57.50 11.51 21.65 0.25 -57.25 16 23 Si 0.96 47.87 29.56 68.60 2.03 49.90 16 24 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 25 H -0.29 -14.47 7.11 99.48 0.71 -13.77 16 26 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 27 N -0.32 -10.99 3.94 -181.99 -0.72 -11.71 16 28 N -0.35 -12.78 9.92 -47.89 -0.48 -13.26 16 29 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.19 3.94 8.06 -2.91 -0.02 3.92 16 33 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.12 0.44 8.09 -2.39 -0.02 0.42 16 35 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.20 3.55 7.65 -2.91 -0.02 3.53 16 37 H 0.42 17.14 5.50 -92.71 -0.51 16.63 16 38 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 39 H 0.05 2.28 8.14 -2.38 -0.02 2.26 16 40 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.08 2.86 8.10 -2.39 -0.02 2.85 16 42 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 43 H 0.04 2.07 7.36 -2.39 -0.02 2.05 16 44 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -77.36 372.69 2.06 -75.30 By element: Atomic # 1 Polarization: 24.23 SS G_CDS: 0.52 Total: 24.75 kcal Atomic # 6 Polarization: 23.48 SS G_CDS: 7.44 Total: 30.92 kcal Atomic # 7 Polarization: -152.16 SS G_CDS: -7.86 Total: -160.03 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.07 Total: -20.84 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -77.36 2.06 -75.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039026432.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 191.639 kcal (2) G-P(sol) polarization free energy of solvation -77.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds