Wall clock time and date at job start Tue Mar 31 2020 05:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38499 * 125.47978 * 2 1 4 4 C 1.39074 * 107.66471 * 180.02562 * 3 2 1 5 5 N 1.33703 * 132.55089 * 179.97438 * 4 3 2 6 6 C 1.31143 * 121.18453 * 180.02562 * 5 4 3 7 7 C 1.50693 * 119.77037 * 179.97438 * 6 5 4 8 8 C 1.40142 * 120.45873 * 359.74880 * 6 5 4 9 9 C 1.36887 * 119.25726 * 0.50067 * 8 6 5 10 10 C 1.47506 * 120.60674 * 179.77974 * 9 8 6 11 11 O 1.21595 * 119.99918 * 359.72025 * 10 9 8 12 12 N 1.34773 * 119.99829 * 179.72388 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 H 1.08998 * 112.73698 * 303.76094 * 14 13 12 16 16 C 1.53494 * 113.46723 * 172.93529 * 14 13 12 17 17 C 1.53493 * 83.34700 * 219.15332 * 16 14 13 18 18 N 1.47064 * 87.98546 * 26.07068 * 17 16 14 19 19 C 1.36939 * 136.06217 * 152.91440 * 18 17 16 20 20 H 1.08000 * 119.99992 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99650 * 359.94775 * 19 18 17 22 22 N 1.31618 * 120.00002 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99757 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47144 * 60.00254 * 23 21 19 25 25 H 1.48500 * 109.46872 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47132 * 300.00015 * 23 21 19 27 27 N 1.37293 * 106.80572 * 0.02562 * 4 3 2 28 28 N 1.31526 * 125.47786 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46755 * 269.98347 * 1 2 3 30 30 H 1.08999 * 109.47080 * 29.98049 * 1 2 3 31 31 H 1.09000 * 109.47421 * 149.98223 * 1 2 3 32 32 H 1.07990 * 126.17106 * 0.04109 * 3 2 1 33 33 H 1.09002 * 109.46979 * 89.99969 * 7 6 5 34 34 H 1.08996 * 109.47364 * 210.00316 * 7 6 5 35 35 H 1.08998 * 109.47459 * 330.00415 * 7 6 5 36 36 H 1.08000 * 120.37082 * 180.28291 * 8 6 5 37 37 H 0.97005 * 120.00161 * 359.72194 * 12 10 9 38 38 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 39 39 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 40 40 H 1.09003 * 114.20678 * 332.74491 * 16 14 13 41 41 H 1.09005 * 114.20397 * 105.56572 * 16 14 13 42 42 H 1.08998 * 113.46748 * 271.29048 * 17 16 14 43 43 H 1.09001 * 113.46890 * 140.84715 * 17 16 14 44 44 H 0.97002 * 119.99860 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7023 -0.0006 5 7 4.7971 1.3634 -0.0013 6 6 5.9421 0.7240 -0.0023 7 6 7.2331 1.5012 -0.0036 8 6 5.9733 -0.6770 0.0027 9 6 4.7943 -1.3725 -0.0018 10 6 4.7925 -2.8476 -0.0017 11 8 5.8448 -3.4569 -0.0027 12 7 3.6245 -3.5200 -0.0006 13 6 3.6226 -4.9850 0.0001 14 6 2.1795 -5.4932 0.0084 15 1 1.6013 -5.1058 0.8472 16 6 2.0662 -7.0143 -0.1635 17 6 0.8569 -6.6464 -1.0343 18 7 1.5002 -5.3484 -1.2880 19 6 1.4765 -4.4152 -2.2899 20 1 2.0732 -3.5189 -2.2072 21 6 0.6859 -4.6217 -3.4121 22 7 -0.0406 -5.7146 -3.5133 23 14 0.6541 -3.3491 -4.7791 24 1 2.0226 -3.1807 -5.3306 25 1 -0.2618 -3.8027 -5.8564 26 1 0.1757 -2.0520 -4.2369 27 7 3.6108 -0.6704 -0.0015 28 7 2.2704 -1.0711 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.9709 2.1528 0.0006 33 1 7.5453 1.6888 1.0238 34 1 8.0029 0.9261 -0.5181 35 1 7.0849 2.4510 -0.5174 36 1 6.9171 -1.2022 0.0065 37 1 2.7850 -3.0339 0.0042 38 1 4.1311 -5.3493 -0.8925 39 1 4.1410 -5.3486 0.8873 40 1 2.8925 -7.4648 -0.7134 41 1 1.8118 -7.5497 0.7514 42 1 -0.0741 -6.5670 -0.4730 43 1 0.7604 -7.2647 -1.9267 44 1 -0.5933 -5.8587 -4.2973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039026435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:40 Heat of formation + Delta-G solvation = 142.884934 kcal Electronic energy + Delta-G solvation = -28526.881286 eV Core-core repulsion = 24676.683788 eV Total energy + Delta-G solvation = -3850.197497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45629 -39.63943 -38.56445 -38.04658 -34.61900 -34.09169 -32.68096 -32.21052 -30.53633 -28.62018 -28.22054 -27.81971 -27.56184 -24.60894 -23.47500 -22.61150 -21.94671 -20.75727 -20.51627 -19.29099 -18.53878 -17.23175 -16.84781 -16.47876 -16.39140 -15.68251 -15.30377 -15.09740 -14.61465 -14.44969 -14.17825 -14.02748 -13.74985 -13.38971 -13.26696 -13.18253 -13.04279 -12.94834 -12.66918 -12.30080 -12.00483 -11.79906 -11.55551 -11.24689 -11.07912 -11.05464 -10.96640 -10.78754 -10.62806 -10.38710 -10.03038 -9.85617 -9.83509 -9.34888 -9.28784 -8.81401 -8.73787 -8.01495 -6.90746 -5.76984 -3.09074 0.00658 0.70273 1.83625 2.34148 2.85966 3.04433 3.35645 3.37159 3.42029 3.42740 3.53076 3.92221 4.29729 4.43787 4.58742 4.79641 4.97007 5.06854 5.18464 5.20649 5.30789 5.36554 5.40254 5.41596 5.53104 5.60820 5.62549 5.67595 5.68086 5.85574 5.87765 5.98536 6.00021 6.24931 6.32820 6.35668 6.49720 6.55925 6.62069 6.74522 7.21687 7.33362 7.36762 7.44260 7.57343 7.71668 7.97358 8.25081 9.03873 9.70128 10.61820 11.40129 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.004614 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.551624 B = 6067.075727 C = 7109.121133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.126 3.874 3 C -0.257 4.257 4 C 0.261 3.739 5 N -0.455 5.455 6 C 0.199 3.801 7 C -0.105 4.105 8 C -0.160 4.160 9 C 0.155 3.845 10 C 0.550 3.450 11 O -0.529 6.529 12 N -0.686 5.686 13 C 0.116 3.884 14 C 0.127 3.873 15 H 0.049 0.951 16 C -0.160 4.160 17 C 0.152 3.848 18 N -0.599 5.599 19 C -0.208 4.208 20 H 0.077 0.923 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.904 3.096 24 H -0.287 1.287 25 H -0.288 1.288 26 H -0.285 1.285 27 N -0.307 5.307 28 N -0.303 5.303 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.164 0.836 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.179 0.821 37 H 0.422 0.578 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.080 0.920 41 H 0.059 0.941 42 H 0.025 0.975 43 H 0.073 0.927 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.578 11.723 10.288 17.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.288 4.288 4 C 0.033 3.967 5 N -0.168 5.168 6 C 0.034 3.966 7 C -0.162 4.162 8 C -0.185 4.185 9 C 0.037 3.963 10 C 0.333 3.667 11 O -0.407 6.407 12 N -0.340 5.340 13 C -0.008 4.008 14 C 0.019 3.981 15 H 0.066 0.934 16 C -0.199 4.199 17 C 0.027 3.973 18 N -0.324 5.324 19 C -0.336 4.336 20 H 0.095 0.905 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.734 3.266 24 H -0.213 1.213 25 H -0.214 1.214 26 H -0.211 1.211 27 N -0.081 5.081 28 N -0.130 5.130 29 H 0.103 0.897 30 H 0.103 0.897 31 H 0.106 0.894 32 H 0.181 0.819 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.196 0.804 37 H 0.265 0.735 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.099 0.901 41 H 0.078 0.922 42 H 0.043 0.957 43 H 0.091 0.909 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 8.793 10.996 9.929 17.229 hybrid contribution -0.503 1.026 -0.825 1.409 sum 8.290 12.022 9.105 17.209 Atomic orbital electron populations 1.20374 0.85178 1.04703 1.03631 1.22292 0.97499 0.89560 0.93832 1.20849 0.87156 1.00278 1.20468 1.20651 0.94601 0.80048 1.01375 1.67764 0.95984 1.37448 1.15647 1.21867 0.94304 0.90640 0.89756 1.20824 0.90688 1.00492 1.04170 1.21925 0.98048 0.94608 1.03926 1.20916 0.83038 0.93715 0.98650 1.17537 0.85460 0.84497 0.79238 1.90819 1.31053 1.67569 1.51276 1.46398 1.09019 1.09005 1.69600 1.22012 0.99445 0.77608 1.01740 1.22423 0.90521 0.94091 0.91085 0.93409 1.23670 1.01581 0.94622 1.00003 1.22027 0.91666 0.87375 0.96271 1.45685 1.50423 1.21747 1.14576 1.18777 1.22058 0.98466 0.94273 0.90509 1.24708 0.99329 0.97817 0.98252 1.69809 1.31437 1.25919 1.29380 0.86330 0.77402 0.80901 0.81973 1.21325 1.21403 1.21147 1.47373 1.05857 1.07285 1.47578 1.77476 0.82213 1.21579 1.31760 0.89722 0.89744 0.89361 0.81870 0.89078 0.89365 0.89467 0.80418 0.73494 0.90492 0.91701 0.90120 0.92236 0.95704 0.90873 0.93664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.95 10.43 36.01 0.38 -0.58 16 2 C 0.13 1.93 7.15 -82.63 -0.59 1.34 16 3 C -0.26 -3.70 10.83 -39.18 -0.42 -4.12 16 4 C 0.26 4.14 7.93 -155.56 -1.23 2.90 16 5 N -0.46 -6.38 10.36 -8.47 -0.09 -6.47 16 6 C 0.20 2.28 6.82 -82.18 -0.56 1.72 16 7 C -0.10 -0.69 10.18 36.00 0.37 -0.32 16 8 C -0.16 -2.03 9.28 -39.36 -0.37 -2.39 16 9 C 0.15 2.54 6.82 -81.98 -0.56 1.98 16 10 C 0.55 10.16 7.79 -12.48 -0.10 10.06 16 11 O -0.53 -10.27 16.36 5.28 0.09 -10.19 16 12 N -0.69 -13.29 5.33 -61.36 -0.33 -13.62 16 13 C 0.12 2.20 5.52 -4.04 -0.02 2.18 16 14 C 0.13 2.53 4.10 -72.39 -0.30 2.24 16 15 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.16 -2.92 8.03 -26.22 -0.21 -3.13 16 17 C 0.15 3.50 7.39 -8.51 -0.06 3.44 16 18 N -0.60 -14.89 3.65 -176.99 -0.65 -15.54 16 19 C -0.21 -5.75 10.55 -15.06 -0.16 -5.91 16 20 H 0.08 2.13 7.50 -52.49 -0.39 1.74 16 21 C 0.00 -0.13 5.50 -17.43 -0.10 -0.22 16 22 N -0.92 -27.09 11.51 55.49 0.64 -26.45 16 23 Si 0.90 22.66 29.55 -169.99 -5.02 17.64 16 24 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 25 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 26 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 27 N -0.31 -5.30 3.94 -8.87 -0.03 -5.34 16 28 N -0.30 -5.48 9.92 33.51 0.33 -5.15 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.16 1.88 8.06 -52.49 -0.42 1.45 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.18 1.84 7.65 -52.49 -0.40 1.43 16 37 H 0.42 8.52 5.40 -40.82 -0.22 8.30 16 38 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.87 7.12 -51.93 -0.37 1.50 16 44 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -34.04 371.93 -9.41 -43.45 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -6.01 Total: 6.89 kcal Atomic # 6 Polarization: 13.10 SS G_CDS: -3.94 Total: 9.17 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -0.12 Total: -72.56 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.09 Total: -10.19 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.04 -9.41 -43.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039026435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 186.333 kcal (2) G-P(sol) polarization free energy of solvation -34.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds