Wall clock time and date at job start Tue Mar 31 2020 05:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38499 * 125.47978 * 2 1 4 4 C 1.39074 * 107.66471 * 180.02562 * 3 2 1 5 5 N 1.33703 * 132.55089 * 179.97438 * 4 3 2 6 6 C 1.31143 * 121.18453 * 180.02562 * 5 4 3 7 7 C 1.50693 * 119.77037 * 179.97438 * 6 5 4 8 8 C 1.40142 * 120.45873 * 359.74880 * 6 5 4 9 9 C 1.36887 * 119.25726 * 0.50067 * 8 6 5 10 10 C 1.47506 * 120.60674 * 179.77974 * 9 8 6 11 11 O 1.21595 * 119.99918 * 359.72025 * 10 9 8 12 12 N 1.34773 * 119.99829 * 179.72388 * 10 9 8 13 13 C 1.46506 * 119.99969 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47237 * 179.72043 * 13 12 10 15 15 H 1.08998 * 112.73698 * 303.76094 * 14 13 12 16 16 C 1.53494 * 113.46723 * 172.93529 * 14 13 12 17 17 C 1.53493 * 83.34700 * 219.15332 * 16 14 13 18 18 N 1.47064 * 87.98546 * 26.07068 * 17 16 14 19 19 C 1.36939 * 136.06217 * 152.91440 * 18 17 16 20 20 H 1.08000 * 119.99992 * 179.97438 * 19 18 17 21 21 C 1.38817 * 119.99650 * 359.94775 * 19 18 17 22 22 N 1.31618 * 120.00002 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99757 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47144 * 60.00254 * 23 21 19 25 25 H 1.48500 * 109.46872 * 180.02562 * 23 21 19 26 26 H 1.48502 * 109.47132 * 300.00015 * 23 21 19 27 27 N 1.37293 * 106.80572 * 0.02562 * 4 3 2 28 28 N 1.31526 * 125.47786 * 180.02562 * 2 1 3 29 29 H 1.09004 * 109.46755 * 269.98347 * 1 2 3 30 30 H 1.08999 * 109.47080 * 29.98049 * 1 2 3 31 31 H 1.09000 * 109.47421 * 149.98223 * 1 2 3 32 32 H 1.07990 * 126.17106 * 0.04109 * 3 2 1 33 33 H 1.09002 * 109.46979 * 89.99969 * 7 6 5 34 34 H 1.08996 * 109.47364 * 210.00316 * 7 6 5 35 35 H 1.08998 * 109.47459 * 330.00415 * 7 6 5 36 36 H 1.08000 * 120.37082 * 180.28291 * 8 6 5 37 37 H 0.97005 * 120.00161 * 359.72194 * 12 10 9 38 38 H 1.09001 * 109.46512 * 299.72412 * 13 12 10 39 39 H 1.08998 * 109.47174 * 59.71534 * 13 12 10 40 40 H 1.09003 * 114.20678 * 332.74491 * 16 14 13 41 41 H 1.09005 * 114.20397 * 105.56572 * 16 14 13 42 42 H 1.08998 * 113.46748 * 271.29048 * 17 16 14 43 43 H 1.09001 * 113.46890 * 140.84715 * 17 16 14 44 44 H 0.97002 * 119.99860 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7023 -0.0006 5 7 4.7971 1.3634 -0.0013 6 6 5.9421 0.7240 -0.0023 7 6 7.2331 1.5012 -0.0036 8 6 5.9733 -0.6770 0.0027 9 6 4.7943 -1.3725 -0.0018 10 6 4.7925 -2.8476 -0.0017 11 8 5.8448 -3.4569 -0.0027 12 7 3.6245 -3.5200 -0.0006 13 6 3.6226 -4.9850 0.0001 14 6 2.1795 -5.4932 0.0084 15 1 1.6013 -5.1058 0.8472 16 6 2.0662 -7.0143 -0.1635 17 6 0.8569 -6.6464 -1.0343 18 7 1.5002 -5.3484 -1.2880 19 6 1.4765 -4.4152 -2.2899 20 1 2.0732 -3.5189 -2.2072 21 6 0.6859 -4.6217 -3.4121 22 7 -0.0406 -5.7146 -3.5133 23 14 0.6541 -3.3491 -4.7791 24 1 2.0226 -3.1807 -5.3306 25 1 -0.2618 -3.8027 -5.8564 26 1 0.1757 -2.0520 -4.2369 27 7 3.6108 -0.6704 -0.0015 28 7 2.2704 -1.0711 -0.0005 29 1 -0.3633 -0.0003 1.0277 30 1 -0.3633 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5141 32 1 1.9709 2.1528 0.0006 33 1 7.5453 1.6888 1.0238 34 1 8.0029 0.9261 -0.5181 35 1 7.0849 2.4510 -0.5174 36 1 6.9171 -1.2022 0.0065 37 1 2.7850 -3.0339 0.0042 38 1 4.1311 -5.3493 -0.8925 39 1 4.1410 -5.3486 0.8873 40 1 2.8925 -7.4648 -0.7134 41 1 1.8118 -7.5497 0.7514 42 1 -0.0741 -6.5670 -0.4730 43 1 0.7604 -7.2647 -1.9267 44 1 -0.5933 -5.8587 -4.2973 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039026435.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:39 Heat of formation + Delta-G solvation = 120.450124 kcal Electronic energy + Delta-G solvation = -28527.854132 eV Core-core repulsion = 24676.683788 eV Total energy + Delta-G solvation = -3851.170344 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.56571 -41.06539 -39.94755 -39.41564 -35.93468 -35.39603 -34.28652 -33.67507 -31.49293 -30.08971 -29.68700 -29.38679 -28.52182 -25.88107 -25.43310 -23.61889 -23.49569 -22.04344 -21.73632 -21.01820 -19.81032 -18.72365 -18.16868 -17.83217 -17.60342 -17.15320 -17.07488 -16.35989 -16.18351 -15.81791 -15.57867 -15.25612 -14.99005 -14.87781 -14.64690 -14.28762 -14.03144 -13.95244 -13.72955 -13.41093 -13.34480 -13.12617 -13.02996 -12.80625 -12.70101 -12.64803 -12.40787 -12.23709 -12.14537 -11.96420 -11.76092 -11.64326 -11.16962 -10.98419 -10.87847 -10.43950 -10.25389 -9.13767 -8.93115 -7.92120 -5.22794 -1.11160 -0.34295 0.73526 1.15227 1.34712 1.35493 1.42339 1.61218 1.73971 2.23707 2.39985 2.57862 2.77451 3.15420 3.29242 3.42176 3.67262 3.73470 3.84950 3.92228 4.02274 4.11665 4.24825 4.33272 4.49534 4.51308 4.62857 4.63402 4.73349 4.74833 4.79612 4.80955 4.82043 4.99660 5.02069 5.02148 5.16592 5.22136 5.27642 5.34970 5.45417 5.54895 5.68866 5.93652 6.12144 6.33540 6.40992 6.78716 6.91415 7.59117 8.58849 9.24868 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.004614 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.551624 B = 6067.075727 C = 7109.121133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.115 3.885 3 C -0.258 4.258 4 C 0.243 3.757 5 N -0.464 5.464 6 C 0.206 3.794 7 C -0.102 4.102 8 C -0.132 4.132 9 C 0.114 3.886 10 C 0.550 3.450 11 O -0.546 6.546 12 N -0.697 5.697 13 C 0.123 3.877 14 C 0.129 3.871 15 H 0.059 0.941 16 C -0.128 4.128 17 C 0.145 3.855 18 N -0.626 5.626 19 C -0.200 4.200 20 H 0.069 0.931 21 C -0.060 4.060 22 N -0.947 5.947 23 Si 0.956 3.044 24 H -0.289 1.289 25 H -0.287 1.287 26 H -0.279 1.279 27 N -0.320 5.320 28 N -0.349 5.349 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.063 0.937 32 H 0.190 0.810 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.204 0.796 37 H 0.418 0.582 38 H 0.054 0.946 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.022 0.978 43 H 0.040 0.960 44 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.487 13.472 11.574 20.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.042 4.042 3 C -0.288 4.288 4 C 0.016 3.984 5 N -0.178 5.178 6 C 0.042 3.958 7 C -0.159 4.159 8 C -0.157 4.157 9 C -0.003 4.003 10 C 0.334 3.666 11 O -0.425 6.425 12 N -0.351 5.351 13 C -0.001 4.001 14 C 0.022 3.978 15 H 0.077 0.923 16 C -0.167 4.167 17 C 0.019 3.981 18 N -0.352 5.352 19 C -0.329 4.329 20 H 0.087 0.913 21 C -0.254 4.254 22 N -0.597 5.597 23 Si 0.786 3.214 24 H -0.216 1.216 25 H -0.213 1.213 26 H -0.206 1.206 27 N -0.094 5.094 28 N -0.177 5.177 29 H 0.124 0.876 30 H 0.129 0.871 31 H 0.082 0.918 32 H 0.207 0.793 33 H 0.133 0.867 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.221 0.779 37 H 0.260 0.740 38 H 0.072 0.928 39 H 0.110 0.890 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.040 0.960 43 H 0.059 0.941 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.720 12.749 11.247 20.098 hybrid contribution -0.957 0.554 -1.138 1.587 sum 9.763 13.303 10.108 19.351 Atomic orbital electron populations 1.20489 0.83294 1.04693 1.05008 1.22832 0.98727 0.89400 0.93230 1.21215 0.86638 1.01166 1.19797 1.21129 0.95837 0.79785 1.01673 1.67902 0.96136 1.37352 1.16421 1.22721 0.95377 0.90449 0.87297 1.21064 0.88355 1.00398 1.06037 1.22441 0.97714 0.95356 1.00218 1.20930 0.84187 0.92831 1.02358 1.17806 0.84864 0.85582 0.78327 1.90787 1.31220 1.68367 1.52106 1.46495 1.09347 1.09075 1.70194 1.21875 0.98540 0.77889 1.01841 1.22574 0.90689 0.95451 0.89061 0.92327 1.23475 0.98879 0.93781 1.00543 1.22055 0.93566 0.86529 0.95943 1.45987 1.51341 1.21871 1.16035 1.18912 1.20663 0.98340 0.94969 0.91340 1.25348 1.00023 0.99589 1.00392 1.69963 1.32613 1.27404 1.29693 0.85488 0.76971 0.79240 0.79729 1.21626 1.21304 1.20575 1.47396 1.05641 1.07781 1.48537 1.77368 0.83179 1.23373 1.33738 0.87613 0.87089 0.91848 0.79275 0.86717 0.86817 0.88802 0.77901 0.73969 0.92761 0.89049 0.89695 0.87895 0.96005 0.94124 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.79 10.43 71.24 0.74 -1.04 16 2 C 0.12 3.53 7.15 42.67 0.31 3.84 16 3 C -0.26 -7.22 10.83 22.53 0.24 -6.98 16 4 C 0.24 7.54 7.93 133.23 1.06 8.60 16 5 N -0.46 -12.16 10.36 -180.72 -1.87 -14.03 16 6 C 0.21 4.17 6.82 43.12 0.29 4.46 16 7 C -0.10 -0.91 10.18 71.23 0.73 -0.19 16 8 C -0.13 -3.09 9.28 22.42 0.21 -2.88 16 9 C 0.11 3.68 6.82 40.36 0.28 3.96 16 10 C 0.55 20.34 7.79 86.69 0.68 21.01 16 11 O -0.55 -20.88 16.36 -4.02 -0.07 -20.95 16 12 N -0.70 -27.31 5.33 -466.29 -2.48 -29.80 16 13 C 0.12 4.60 5.52 86.38 0.48 5.08 16 14 C 0.13 5.07 4.10 41.79 0.17 5.24 16 15 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 16 C -0.13 -4.47 8.03 30.93 0.25 -4.22 16 17 C 0.14 6.72 7.39 83.18 0.62 7.34 16 18 N -0.63 -31.68 3.65 -713.89 -2.61 -34.29 16 19 C -0.20 -11.35 10.55 84.03 0.89 -10.47 16 20 H 0.07 3.93 7.50 -2.91 -0.02 3.90 16 21 C -0.06 -3.51 5.50 84.86 0.47 -3.05 16 22 N -0.95 -57.66 11.51 21.65 0.25 -57.41 16 23 Si 0.96 47.80 29.55 68.60 2.03 49.83 16 24 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 26 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 27 N -0.32 -11.08 3.94 -181.98 -0.72 -11.79 16 28 N -0.35 -12.91 9.92 -47.89 -0.48 -13.39 16 29 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.19 4.00 8.06 -2.92 -0.02 3.98 16 33 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.11 0.51 8.09 -2.39 -0.02 0.49 16 35 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.20 3.57 7.65 -2.91 -0.02 3.55 16 37 H 0.42 17.31 5.40 -92.70 -0.50 16.81 16 38 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 40 H 0.08 2.92 8.12 -2.39 -0.02 2.90 16 41 H 0.10 2.76 8.14 -2.38 -0.02 2.74 16 42 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.04 2.14 7.12 -2.39 -0.02 2.12 16 44 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -77.29 371.93 1.98 -75.31 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: 0.53 Total: 25.83 kcal Atomic # 6 Polarization: 23.30 SS G_CDS: 7.39 Total: 30.69 kcal Atomic # 7 Polarization: -152.81 SS G_CDS: -7.91 Total: -160.72 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.07 Total: -20.95 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -77.29 1.98 -75.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039026435.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.762 kcal (2) G-P(sol) polarization free energy of solvation -77.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds