Wall clock time and date at job start Tue Mar 31 2020 05:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30166 * 125.70397 * 2 1 4 4 N 1.39978 * 109.85947 * 180.02562 * 3 2 1 5 5 C 1.46495 * 125.89186 * 180.02562 * 4 3 2 6 6 C 1.37109 * 108.21260 * 359.97438 * 4 3 2 7 7 N 1.32260 * 133.48167 * 179.97438 * 6 4 3 8 8 C 1.32394 * 121.41506 * 180.02562 * 7 6 4 9 9 C 1.48110 * 119.35889 * 179.97438 * 8 7 6 10 10 O 1.21516 * 120.00349 * 179.72591 * 9 8 7 11 11 N 1.34784 * 119.99910 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72858 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 H 1.09003 * 112.73537 * 303.75202 * 13 12 11 15 15 C 1.53497 * 113.46535 * 172.93886 * 13 12 11 16 16 C 1.53489 * 83.34435 * 219.14787 * 15 13 12 17 17 N 1.47064 * 113.47190 * 74.50127 * 13 12 11 18 18 C 1.36932 * 136.05740 * 321.86413 * 17 13 12 19 19 H 1.08001 * 120.00350 * 0.02562 * 18 17 13 20 20 C 1.38818 * 119.99907 * 179.97438 * 18 17 13 21 21 N 1.31616 * 119.99984 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47382 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47106 * 120.00625 * 22 20 18 25 25 H 1.48496 * 109.47420 * 240.00566 * 22 20 18 26 26 C 1.39857 * 121.28338 * 0.27016 * 8 7 6 27 27 C 1.36857 * 119.59578 * 359.41322 * 26 8 7 28 28 C 1.40163 * 118.30511 * 0.60835 * 27 26 8 29 29 H 1.09005 * 109.46811 * 269.95740 * 1 2 3 30 30 H 1.08999 * 109.47483 * 29.95926 * 1 2 3 31 31 H 1.09001 * 109.46905 * 149.96101 * 1 2 3 32 32 H 1.09003 * 109.46966 * 269.95237 * 5 4 3 33 33 H 1.09000 * 109.47602 * 29.95199 * 5 4 3 34 34 H 1.08997 * 109.47564 * 149.95259 * 5 4 3 35 35 H 0.97005 * 119.99846 * 359.72646 * 11 9 8 36 36 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 37 37 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 38 38 H 1.09003 * 114.20815 * 332.73781 * 15 13 12 39 39 H 1.09005 * 114.20781 * 105.56354 * 15 13 12 40 40 H 1.09003 * 113.46911 * 271.28952 * 16 15 13 41 41 H 1.08997 * 113.47149 * 140.84621 * 16 15 13 42 42 H 0.96996 * 119.99746 * 179.97438 * 21 20 18 43 43 H 1.08008 * 120.20001 * 179.72088 * 26 8 7 44 44 H 1.08003 * 120.84576 * 180.25931 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2666 1.0570 0.0000 4 7 3.6132 0.6748 -0.0006 5 6 4.7634 1.5820 -0.0002 6 6 3.6698 -0.6951 -0.0004 7 7 4.6663 -1.5648 -0.0011 8 6 4.4433 -2.8698 -0.0012 9 6 5.5934 -3.8030 -0.0027 10 8 5.4021 -5.0030 0.0023 11 7 6.8521 -3.3213 -0.0044 12 6 7.9897 -4.2443 0.0002 13 6 9.2946 -3.4455 -0.0024 14 1 9.3628 -2.7526 -0.8412 15 6 10.5454 -4.3173 0.1751 16 6 11.0191 -3.1469 1.0478 17 7 9.6052 -2.8267 1.2951 18 6 8.8919 -2.2192 2.2937 19 1 7.8203 -2.1165 2.2063 20 6 9.5459 -1.7363 3.4189 21 7 10.8517 -1.8620 3.5257 22 14 8.5727 -0.9082 4.7814 23 1 7.1319 -0.8934 4.4220 24 1 8.7585 -1.6591 6.0490 25 1 9.0539 0.4856 4.9567 26 6 3.1428 -3.3843 -0.0061 27 6 2.0765 -2.5264 0.0013 28 6 2.3322 -1.1483 0.0005 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3633 -0.8897 -0.5144 32 1 5.0490 1.8071 -1.0278 33 1 4.4975 2.5058 0.5135 34 1 5.5997 1.1083 0.5138 35 1 7.0048 -2.3633 -0.0088 36 1 7.9479 -4.8681 0.8930 37 1 7.9484 -4.8763 -0.8869 38 1 10.3711 -5.2425 0.7245 39 1 11.1253 -4.4580 -0.7371 40 1 11.5476 -2.3746 0.4887 41 1 11.5558 -3.4619 1.9426 42 1 11.3087 -1.5242 4.3117 43 1 2.9810 -4.4522 -0.0106 44 1 1.0638 -2.9018 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039054574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:24 Heat of formation + Delta-G solvation = 130.498571 kcal Electronic energy + Delta-G solvation = -27794.497492 eV Core-core repulsion = 23943.762881 eV Total energy + Delta-G solvation = -3850.734610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.96542 -39.72978 -38.33451 -37.57449 -34.77623 -34.12210 -32.25211 -31.97740 -30.63300 -29.78046 -28.11029 -27.67966 -25.83287 -24.83690 -23.47591 -22.84046 -21.90786 -20.53693 -20.04484 -19.28447 -17.95734 -17.62414 -17.17732 -16.55341 -16.17435 -15.57528 -15.33787 -14.90442 -14.66730 -14.37831 -13.94523 -13.85977 -13.78386 -13.54254 -13.44142 -13.25324 -13.00775 -12.93406 -12.80134 -12.44214 -12.02347 -11.80034 -11.53809 -11.17201 -11.12599 -11.00005 -10.79336 -10.69625 -10.57997 -10.26939 -9.94582 -9.82557 -9.58704 -9.22297 -9.09522 -8.82521 -8.57952 -8.44728 -6.90711 -5.77856 -3.10013 0.24065 1.10067 1.93214 2.11774 2.89028 3.32312 3.36384 3.42833 3.44241 3.82711 3.85673 4.03477 4.36475 4.41979 4.59544 4.80287 4.97628 5.03277 5.12507 5.15080 5.21978 5.23470 5.35849 5.39005 5.46588 5.52442 5.56332 5.59311 5.70923 5.90886 5.92713 5.99092 6.07780 6.30024 6.31704 6.39472 6.58341 6.59489 6.69550 6.84077 7.21249 7.22721 7.38369 7.55992 7.58153 7.90596 7.97075 8.43533 9.02987 9.69622 10.61807 11.39448 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.003835 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.834926 B = 7298.846794 C = 8641.905643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.100 3.900 3 N -0.237 5.237 4 N -0.387 5.387 5 C 0.109 3.891 6 C 0.312 3.688 7 N -0.470 5.470 8 C 0.164 3.836 9 C 0.564 3.436 10 O -0.538 6.538 11 N -0.688 5.688 12 C 0.118 3.882 13 C 0.127 3.873 14 H 0.049 0.951 15 C -0.160 4.160 16 C 0.151 3.849 17 N -0.601 5.601 18 C -0.211 4.211 19 H 0.081 0.919 20 C -0.006 4.006 21 N -0.918 5.918 22 Si 0.906 3.094 23 H -0.281 1.281 24 H -0.290 1.290 25 H -0.291 1.291 26 C -0.162 4.162 27 C -0.001 4.001 28 C -0.209 4.209 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.097 0.903 35 H 0.414 0.586 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.072 0.928 42 H 0.252 0.748 43 H 0.155 0.845 44 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.936 1.639 -10.264 19.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.076 4.076 3 N -0.053 5.053 4 N -0.177 5.177 5 C -0.031 4.031 6 C 0.071 3.929 7 N -0.188 5.188 8 C 0.012 3.988 9 C 0.347 3.653 10 O -0.415 6.415 11 N -0.337 5.337 12 C -0.006 4.006 13 C 0.019 3.981 14 H 0.066 0.934 15 C -0.199 4.199 16 C 0.026 3.974 17 N -0.327 5.327 18 C -0.338 4.338 19 H 0.099 0.901 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.736 3.264 23 H -0.206 1.206 24 H -0.217 1.217 25 H -0.218 1.218 26 C -0.184 4.184 27 C -0.030 4.030 28 C -0.219 4.219 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.092 0.908 33 H 0.107 0.893 34 H 0.115 0.885 35 H 0.250 0.750 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.042 0.958 41 H 0.091 0.909 42 H 0.062 0.938 43 H 0.173 0.827 44 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.022 2.765 -9.921 19.047 hybrid contribution -0.958 0.175 0.834 1.282 sum -16.980 2.940 -9.087 19.482 Atomic orbital electron populations 1.20281 0.85495 1.03940 1.03651 1.22296 0.97132 0.88776 0.99415 1.76730 0.86385 1.23046 1.19172 1.48261 1.04536 1.01560 1.63382 1.21920 0.84445 0.93264 1.03488 1.18931 0.90004 0.86203 0.97797 1.66488 1.34524 1.01791 1.15957 1.21245 0.94181 0.88264 0.95122 1.17774 0.82717 0.86944 0.77833 1.90764 1.85220 1.14407 1.51143 1.45888 1.04816 1.12031 1.70951 1.21933 0.84628 0.92419 1.01640 1.22426 0.91654 0.93155 0.90867 0.93385 1.23661 0.97290 0.99018 0.99957 1.22030 0.88164 0.90918 0.96323 1.45698 1.03610 1.68643 1.14711 1.18919 0.90389 1.30125 0.94384 0.90104 1.24740 0.95702 1.01538 0.98308 1.69832 1.06597 1.51005 1.29079 0.86141 0.78910 0.78971 0.82352 1.20632 1.21673 1.21776 1.21548 0.91269 1.02263 1.03355 1.20765 0.99944 0.89872 0.92407 1.19574 0.93811 0.95337 1.13187 0.89792 0.90188 0.89920 0.90837 0.89266 0.88452 0.74967 0.90687 0.91848 0.90128 0.92294 0.95751 0.90945 0.93767 0.82722 0.83621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.49 10.45 36.00 0.38 -0.11 16 2 C 0.10 1.13 7.23 -82.09 -0.59 0.54 16 3 N -0.24 -3.15 12.43 33.88 0.42 -2.73 16 4 N -0.39 -5.47 4.07 -67.16 -0.27 -5.74 16 5 C 0.11 1.23 11.48 59.84 0.69 1.92 16 6 C 0.31 4.76 8.00 -156.15 -1.25 3.51 16 7 N -0.47 -7.69 9.54 -8.89 -0.08 -7.78 16 8 C 0.16 2.60 6.74 -82.97 -0.56 2.04 16 9 C 0.56 10.06 7.81 -12.21 -0.10 9.97 16 10 O -0.54 -10.48 16.29 5.35 0.09 -10.39 16 11 N -0.69 -12.44 5.32 -61.17 -0.33 -12.76 16 12 C 0.12 2.14 5.52 -4.04 -0.02 2.12 16 13 C 0.13 2.44 4.10 -72.40 -0.30 2.14 16 14 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 15 C -0.16 -2.88 8.03 -26.22 -0.21 -3.09 16 16 C 0.15 3.44 7.39 -8.52 -0.06 3.38 16 17 N -0.60 -14.64 3.65 -177.02 -0.65 -15.29 16 18 C -0.21 -5.70 10.55 -15.06 -0.16 -5.86 16 19 H 0.08 2.15 7.50 -52.49 -0.39 1.76 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -26.97 11.51 55.49 0.64 -26.33 16 22 Si 0.91 22.36 29.55 -169.99 -5.02 17.34 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C -0.16 -2.08 9.55 -39.48 -0.38 -2.45 16 27 C 0.00 -0.01 10.17 -39.36 -0.40 -0.41 16 28 C -0.21 -2.68 6.12 -106.83 -0.65 -3.33 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.41 7.62 7.68 -40.82 -0.31 7.31 16 36 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.08 1.44 8.12 -51.93 -0.42 1.02 16 39 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 1.84 7.12 -51.93 -0.37 1.47 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.16 1.78 7.61 -52.48 -0.40 1.38 16 44 H 0.15 0.95 8.06 -52.48 -0.42 0.53 16 LS Contribution 376.29 15.07 5.67 5.67 Total: -1.00 -34.00 376.29 -9.36 -43.36 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.11 Total: 4.57 kcal Atomic # 6 Polarization: 13.80 SS G_CDS: -3.71 Total: 10.09 kcal Atomic # 7 Polarization: -70.36 SS G_CDS: -0.27 Total: -70.64 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.00 -9.36 -43.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039054574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.857 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 139.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds