Wall clock time and date at job start Tue Mar 31 2020 05:39:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.30166 * 125.70397 * 2 1 4 4 N 1.39978 * 109.85947 * 180.02562 * 3 2 1 5 5 C 1.46495 * 125.89186 * 180.02562 * 4 3 2 6 6 C 1.37109 * 108.21260 * 359.97438 * 4 3 2 7 7 N 1.32260 * 133.48167 * 179.97438 * 6 4 3 8 8 C 1.32394 * 121.41506 * 180.02562 * 7 6 4 9 9 C 1.48110 * 119.35889 * 179.97438 * 8 7 6 10 10 O 1.21516 * 120.00349 * 179.72591 * 9 8 7 11 11 N 1.34784 * 119.99910 * 359.97438 * 9 8 7 12 12 C 1.46499 * 119.99893 * 179.72858 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 H 1.09003 * 112.73537 * 303.75202 * 13 12 11 15 15 C 1.53497 * 113.46535 * 172.93886 * 13 12 11 16 16 C 1.53489 * 83.34435 * 219.14787 * 15 13 12 17 17 N 1.47064 * 113.47190 * 74.50127 * 13 12 11 18 18 C 1.36932 * 136.05740 * 321.86413 * 17 13 12 19 19 H 1.08001 * 120.00350 * 0.02562 * 18 17 13 20 20 C 1.38818 * 119.99907 * 179.97438 * 18 17 13 21 21 N 1.31616 * 119.99984 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99818 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47382 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47106 * 120.00625 * 22 20 18 25 25 H 1.48496 * 109.47420 * 240.00566 * 22 20 18 26 26 C 1.39857 * 121.28338 * 0.27016 * 8 7 6 27 27 C 1.36857 * 119.59578 * 359.41322 * 26 8 7 28 28 C 1.40163 * 118.30511 * 0.60835 * 27 26 8 29 29 H 1.09005 * 109.46811 * 269.95740 * 1 2 3 30 30 H 1.08999 * 109.47483 * 29.95926 * 1 2 3 31 31 H 1.09001 * 109.46905 * 149.96101 * 1 2 3 32 32 H 1.09003 * 109.46966 * 269.95237 * 5 4 3 33 33 H 1.09000 * 109.47602 * 29.95199 * 5 4 3 34 34 H 1.08997 * 109.47564 * 149.95259 * 5 4 3 35 35 H 0.97005 * 119.99846 * 359.72646 * 11 9 8 36 36 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 37 37 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 38 38 H 1.09003 * 114.20815 * 332.73781 * 15 13 12 39 39 H 1.09005 * 114.20781 * 105.56354 * 15 13 12 40 40 H 1.09003 * 113.46911 * 271.28952 * 16 15 13 41 41 H 1.08997 * 113.47149 * 140.84621 * 16 15 13 42 42 H 0.96996 * 119.99746 * 179.97438 * 21 20 18 43 43 H 1.08008 * 120.20001 * 179.72088 * 26 8 7 44 44 H 1.08003 * 120.84576 * 180.25931 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2666 1.0570 0.0000 4 7 3.6132 0.6748 -0.0006 5 6 4.7634 1.5820 -0.0002 6 6 3.6698 -0.6951 -0.0004 7 7 4.6663 -1.5648 -0.0011 8 6 4.4433 -2.8698 -0.0012 9 6 5.5934 -3.8030 -0.0027 10 8 5.4021 -5.0030 0.0023 11 7 6.8521 -3.3213 -0.0044 12 6 7.9897 -4.2443 0.0002 13 6 9.2946 -3.4455 -0.0024 14 1 9.3628 -2.7526 -0.8412 15 6 10.5454 -4.3173 0.1751 16 6 11.0191 -3.1469 1.0478 17 7 9.6052 -2.8267 1.2951 18 6 8.8919 -2.2192 2.2937 19 1 7.8203 -2.1165 2.2063 20 6 9.5459 -1.7363 3.4189 21 7 10.8517 -1.8620 3.5257 22 14 8.5727 -0.9082 4.7814 23 1 7.1319 -0.8934 4.4220 24 1 8.7585 -1.6591 6.0490 25 1 9.0539 0.4856 4.9567 26 6 3.1428 -3.3843 -0.0061 27 6 2.0765 -2.5264 0.0013 28 6 2.3322 -1.1483 0.0005 29 1 -0.3633 -0.0008 1.0277 30 1 -0.3634 0.8903 -0.5132 31 1 -0.3633 -0.8897 -0.5144 32 1 5.0490 1.8071 -1.0278 33 1 4.4975 2.5058 0.5135 34 1 5.5997 1.1083 0.5138 35 1 7.0048 -2.3633 -0.0088 36 1 7.9479 -4.8681 0.8930 37 1 7.9484 -4.8763 -0.8869 38 1 10.3711 -5.2425 0.7245 39 1 11.1253 -4.4580 -0.7371 40 1 11.5476 -2.3746 0.4887 41 1 11.5558 -3.4619 1.9426 42 1 11.3087 -1.5242 4.3117 43 1 2.9810 -4.4522 -0.0106 44 1 1.0638 -2.9018 0.0019 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039054574.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:23 Heat of formation + Delta-G solvation = 107.536214 kcal Electronic energy + Delta-G solvation = -27795.493214 eV Core-core repulsion = 23943.762881 eV Total energy + Delta-G solvation = -3851.730333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.93931 -41.06460 -39.89734 -38.79170 -35.79951 -35.46140 -34.27394 -32.97255 -31.70857 -30.46984 -29.98736 -29.22344 -26.71317 -25.98181 -25.40826 -23.92895 -23.34093 -21.87074 -21.06965 -20.89136 -19.32876 -18.69748 -18.35257 -18.09136 -17.23867 -17.06105 -16.95649 -16.29762 -16.07600 -15.81489 -15.52403 -14.97535 -14.81645 -14.64550 -14.54342 -14.31393 -14.20954 -13.88236 -13.67885 -13.61865 -13.35256 -13.16361 -13.02924 -12.75186 -12.72613 -12.60475 -12.34301 -12.09425 -11.89300 -11.65960 -11.61246 -11.53912 -11.08134 -10.88005 -10.61380 -10.22688 -9.96953 -9.40220 -8.90452 -7.90520 -5.21055 -0.80613 0.13928 1.00173 1.13768 1.36920 1.38591 1.46788 1.71100 2.03557 2.42472 2.69950 2.81943 3.13994 3.31348 3.41320 3.50352 3.57152 3.84322 3.94070 4.08520 4.13050 4.22007 4.25842 4.29565 4.33775 4.56812 4.61852 4.64170 4.69212 4.82847 4.84691 4.86503 4.92058 5.02528 5.06139 5.08488 5.25547 5.31625 5.35200 5.49850 5.58008 5.62276 5.73936 5.96002 6.21824 6.39729 6.64501 6.92862 7.03957 7.61682 8.61707 9.27194 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.011812 B = 0.003835 C = 0.003239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2369.834926 B = 7298.846794 C = 8641.905643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.110 3.890 3 N -0.260 5.260 4 N -0.402 5.402 5 C 0.107 3.893 6 C 0.282 3.718 7 N -0.497 5.497 8 C 0.139 3.861 9 C 0.564 3.436 10 O -0.559 6.559 11 N -0.692 5.692 12 C 0.126 3.874 13 C 0.131 3.869 14 H 0.066 0.934 15 C -0.131 4.131 16 C 0.143 3.857 17 N -0.629 5.629 18 C -0.202 4.202 19 H 0.079 0.921 20 C -0.066 4.066 21 N -0.950 5.950 22 Si 0.962 3.038 23 H -0.277 1.277 24 H -0.294 1.294 25 H -0.291 1.291 26 C -0.165 4.165 27 C 0.024 3.976 28 C -0.215 4.215 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.085 0.915 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.411 0.589 36 H 0.050 0.950 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.022 0.978 41 H 0.037 0.963 42 H 0.246 0.754 43 H 0.168 0.832 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.004 1.179 -11.599 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 N -0.076 5.076 4 N -0.193 5.193 5 C -0.034 4.034 6 C 0.041 3.959 7 N -0.215 5.215 8 C -0.011 4.011 9 C 0.348 3.652 10 O -0.438 6.438 11 N -0.341 5.341 12 C 0.002 3.998 13 C 0.025 3.975 14 H 0.083 0.917 15 C -0.169 4.169 16 C 0.017 3.983 17 N -0.355 5.355 18 C -0.330 4.330 19 H 0.097 0.903 20 C -0.258 4.258 21 N -0.600 5.600 22 Si 0.792 3.208 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.218 1.218 26 C -0.188 4.188 27 C -0.005 4.005 28 C -0.225 4.225 29 H 0.118 0.882 30 H 0.107 0.893 31 H 0.129 0.871 32 H 0.103 0.897 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.247 0.753 36 H 0.069 0.931 37 H 0.107 0.893 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.040 0.960 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.186 0.814 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -19.099 2.300 -11.291 22.306 hybrid contribution -0.094 0.324 1.169 1.216 sum -19.193 2.625 -10.122 21.857 Atomic orbital electron populations 1.20547 0.81837 1.05782 1.05144 1.23080 0.99076 0.87478 0.96962 1.76730 0.86180 1.24111 1.20599 1.48520 1.05310 1.01489 1.63933 1.21995 0.83730 0.93361 1.04280 1.19308 0.91102 0.86768 0.98729 1.66325 1.35760 1.02217 1.17202 1.21111 0.94577 0.88086 0.97315 1.18103 0.83058 0.87103 0.76900 1.90733 1.85596 1.15287 1.52166 1.45920 1.05177 1.11772 1.71240 1.21778 0.84274 0.92131 1.01616 1.22584 0.92890 0.93191 0.88879 0.91715 1.23472 0.96014 0.97013 1.00410 1.22059 0.87320 0.92978 0.95933 1.46012 1.04657 1.68534 1.16294 1.19141 0.90586 1.28361 0.94944 0.90335 1.25410 0.96558 1.03315 1.00566 1.69991 1.07775 1.52810 1.29429 0.85240 0.77845 0.77874 0.79797 1.20233 1.22126 1.21760 1.21746 0.90504 1.03278 1.03298 1.21281 1.01652 0.88436 0.89094 1.19969 0.93029 0.96766 1.12737 0.88237 0.89345 0.87140 0.89651 0.87753 0.90044 0.75324 0.93143 0.89291 0.89885 0.88027 0.96038 0.94413 0.94507 0.81430 0.78437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.45 71.23 0.74 0.08 16 2 C 0.11 2.20 7.23 43.59 0.32 2.52 16 3 N -0.26 -6.58 12.43 -46.74 -0.58 -7.16 16 4 N -0.40 -11.28 4.07 -366.41 -1.49 -12.77 16 5 C 0.11 2.45 11.48 127.77 1.47 3.92 16 6 C 0.28 8.52 8.00 134.26 1.07 9.59 16 7 N -0.50 -16.43 9.54 -182.03 -1.74 -18.16 16 8 C 0.14 4.38 6.74 42.07 0.28 4.67 16 9 C 0.56 20.12 7.81 86.86 0.68 20.80 16 10 O -0.56 -21.58 16.29 -3.77 -0.06 -21.64 16 11 N -0.69 -25.13 5.32 -465.72 -2.48 -27.61 16 12 C 0.13 4.49 5.52 86.38 0.48 4.97 16 13 C 0.13 4.90 4.10 41.79 0.17 5.07 16 14 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.13 -4.46 8.03 30.93 0.25 -4.21 16 16 C 0.14 6.56 7.39 83.17 0.61 7.17 16 17 N -0.63 -30.99 3.65 -713.95 -2.61 -33.60 16 18 C -0.20 -11.14 10.55 84.04 0.89 -10.25 16 19 H 0.08 4.28 7.50 -2.91 -0.02 4.25 16 20 C -0.07 -3.77 5.50 84.86 0.47 -3.31 16 21 N -0.95 -57.67 11.51 21.65 0.25 -57.43 16 22 Si 0.96 47.31 29.55 68.60 2.03 49.34 16 23 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.29 -14.51 7.11 99.48 0.71 -13.81 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.42 16 26 C -0.17 -3.92 9.55 22.34 0.21 -3.70 16 27 C 0.02 0.42 10.17 22.41 0.23 0.65 16 28 C -0.21 -5.01 6.12 -21.29 -0.13 -5.14 16 29 H 0.10 0.65 8.14 -2.38 -0.02 0.63 16 30 H 0.09 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.41 15.42 7.68 -92.70 -0.71 14.70 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 37 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 38 H 0.08 2.83 8.12 -2.39 -0.02 2.81 16 39 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 40 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 1.98 7.12 -2.39 -0.02 1.96 16 42 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.17 3.47 7.61 -2.91 -0.02 3.45 16 44 H 0.20 1.38 8.06 -2.91 -0.02 1.35 16 Total: -1.00 -76.98 376.29 1.38 -75.60 By element: Atomic # 1 Polarization: 20.27 SS G_CDS: 0.32 Total: 20.59 kcal Atomic # 6 Polarization: 25.09 SS G_CDS: 7.74 Total: 32.83 kcal Atomic # 7 Polarization: -148.07 SS G_CDS: -8.64 Total: -156.71 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.06 Total: -21.64 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -76.98 1.38 -75.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039054574.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 183.139 kcal (2) G-P(sol) polarization free energy of solvation -76.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds