Wall clock time and date at job start Tue Mar 31 2020 05:34:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86801 * 120.00178 * 2 1 4 4 H 1.48501 * 109.47393 * 270.00286 * 3 2 1 5 5 H 1.48504 * 109.47139 * 30.00134 * 3 2 1 6 6 H 1.48495 * 109.47135 * 150.00008 * 3 2 1 7 7 C 1.38809 * 119.99563 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99489 * 179.97438 * 7 2 1 9 9 N 1.36936 * 120.00405 * 359.97438 * 7 2 1 10 10 C 1.47152 * 125.59696 * 359.97438 * 9 7 2 11 11 C 1.54630 * 107.34339 * 179.10379 * 10 9 7 12 12 C 1.53476 * 102.74424 * 339.34462 * 11 10 9 13 13 C 1.53493 * 111.80591 * 154.35265 * 12 11 10 14 14 C 1.55435 * 101.29893 * 88.09557 * 13 12 11 15 15 N 1.47573 * 104.91766 * 35.61813 * 14 13 12 16 16 C 1.34782 * 125.67598 * 156.11884 * 15 14 13 17 17 O 1.21711 * 119.99636 * 4.25309 * 16 15 14 18 18 C 1.46592 * 119.99855 * 184.25871 * 16 15 14 19 19 C 1.41162 * 126.56353 * 354.25257 * 18 16 15 20 20 N 1.30532 * 108.27234 * 179.97438 * 19 18 16 21 21 N 1.39992 * 109.37147 * 0.02562 * 20 19 18 22 22 C 1.38449 * 143.85196 * 180.02562 * 21 20 19 23 23 C 1.33068 * 108.42170 * 179.97438 * 22 21 20 24 24 N 1.38057 * 108.13915 * 0.02562 * 23 22 21 25 25 H 0.96998 * 126.16049 * 179.74209 * 24 23 22 26 26 C 1.35012 * 108.27246 * 0.02562 * 21 20 19 27 27 C 1.47453 * 108.64960 * 335.85157 * 15 14 13 28 28 C 1.47755 * 125.60082 * 179.97438 * 9 7 2 29 29 H 0.97003 * 119.99470 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.87050 * 59.66244 * 10 9 7 31 31 H 1.09005 * 109.98853 * 298.60673 * 10 9 7 32 32 H 1.08997 * 110.75712 * 221.03183 * 11 10 9 33 33 H 1.09002 * 110.91743 * 97.72751 * 11 10 9 34 34 H 1.09004 * 111.03672 * 206.28755 * 13 12 11 35 35 H 1.08990 * 111.04350 * 330.19612 * 13 12 11 36 36 H 1.08999 * 110.45883 * 276.72655 * 14 13 12 37 37 H 1.09003 * 110.30517 * 154.42783 * 14 13 12 38 38 H 1.07990 * 125.86538 * 0.02562 * 19 18 16 39 39 H 1.07999 * 125.78602 * 359.95400 * 22 21 20 40 40 H 1.07999 * 125.93029 * 179.97438 * 23 22 21 41 41 H 1.08998 * 109.99728 * 121.77915 * 27 15 14 42 42 H 1.09005 * 109.99544 * 243.06862 * 27 15 14 43 43 H 1.09006 * 110.39340 * 83.52391 * 28 9 7 44 44 H 1.08999 * 110.40137 * 321.12702 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3256 -2.3881 -0.0005 10 6 -0.1390 -2.5316 0.0005 11 6 -0.4538 -4.0453 -0.0230 12 6 0.8474 -4.6534 -0.5638 13 6 1.0307 -6.1071 -0.1065 14 6 0.2819 -6.8766 -1.2304 15 7 0.5510 -6.1083 -2.4612 16 6 0.5088 -6.5956 -3.7171 17 8 0.1543 -7.7433 -3.9129 18 6 0.8899 -5.7432 -4.8473 19 6 1.2111 -4.3697 -4.7938 20 7 1.4967 -3.9688 -6.0027 21 7 1.3767 -5.0454 -6.8894 22 6 1.4953 -5.4186 -8.2174 23 6 1.2004 -6.7122 -8.3186 24 7 0.8893 -7.1820 -7.0583 25 1 0.6321 -8.0898 -6.8332 26 6 1.0039 -6.1348 -6.1845 27 6 0.8676 -4.7171 -2.0889 28 6 1.9359 -3.7337 -0.0016 29 1 -0.4849 0.8401 0.0004 30 1 -0.5589 -2.0520 -0.8837 31 1 -0.5569 -2.0802 0.9004 32 1 -1.2867 -4.2562 -0.6936 33 1 -0.6648 -4.4146 0.9807 34 1 2.0861 -6.3783 -0.0781 35 1 0.5595 -6.2751 0.8619 36 1 -0.7886 -6.9024 -1.0265 37 1 0.6752 -7.8890 -1.3224 38 1 1.2199 -3.7561 -3.9051 39 1 1.7788 -4.7697 -9.0328 40 1 1.2031 -7.2935 -9.2288 41 1 1.8564 -4.4476 -2.4601 42 1 0.1182 -4.0412 -2.5008 43 1 2.1985 -4.0324 1.0133 44 1 2.8167 -3.7508 -0.6435 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041806145.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:50 Heat of formation + Delta-G solvation = 145.833492 kcal Electronic energy + Delta-G solvation = -28523.543468 eV Core-core repulsion = 24673.473830 eV Total energy + Delta-G solvation = -3850.069638 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.19677 -40.15388 -38.40867 -37.80930 -35.48179 -32.93658 -32.52909 -30.82430 -29.74661 -29.28320 -28.54733 -28.03194 -25.68013 -24.21548 -23.01436 -22.55347 -21.77125 -21.22444 -20.20578 -19.66786 -18.77032 -17.72881 -16.88025 -16.40062 -16.34429 -15.64367 -15.50950 -15.12704 -14.79677 -14.72042 -14.36865 -13.94237 -13.80342 -13.55438 -13.42656 -13.06439 -12.72967 -12.64038 -12.40415 -11.96818 -11.78569 -11.61083 -11.21663 -11.14174 -10.96058 -10.85493 -10.73274 -10.68406 -10.19374 -10.03605 -9.95188 -9.74805 -9.62805 -9.54054 -9.27850 -8.57206 -8.42277 -7.71448 -6.80520 -5.68318 -3.01728 1.44782 1.74174 1.90603 2.38542 2.64433 3.24233 3.43270 3.48545 3.49950 3.61486 4.23147 4.52244 4.55275 4.70285 4.73930 4.85188 5.03763 5.06552 5.16079 5.35747 5.39867 5.47539 5.52021 5.54860 5.59592 5.74906 5.86540 5.93736 5.98046 6.06187 6.12945 6.26148 6.31871 6.36555 6.52101 6.56003 6.60469 6.71604 6.75457 6.83262 6.90724 7.59197 7.64423 7.65527 7.79255 7.85954 8.27979 8.46581 9.24884 9.84968 10.50623 11.43134 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013134 B = 0.003717 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.393660 B = 7531.168187 C = 9229.275338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C -0.007 4.007 3 Si 0.909 3.091 4 H -0.289 1.289 5 H -0.291 1.291 6 H -0.282 1.282 7 C -0.228 4.228 8 H 0.077 0.923 9 N -0.605 5.605 10 C 0.178 3.822 11 C -0.132 4.132 12 C -0.083 4.083 13 C -0.118 4.118 14 C 0.114 3.886 15 N -0.614 5.614 16 C 0.619 3.381 17 O -0.578 6.578 18 C -0.331 4.331 19 C 0.121 3.879 20 N -0.297 5.297 21 N -0.309 5.309 22 C 0.005 3.995 23 C 0.022 3.978 24 N -0.575 5.575 25 H 0.443 0.557 26 C 0.318 3.682 27 C 0.117 3.883 28 C 0.150 3.850 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.042 0.958 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.214 0.786 39 H 0.192 0.808 40 H 0.204 0.796 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.025 0.975 44 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.068 -16.137 -12.942 20.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.203 4.203 3 Si 0.740 3.260 4 H -0.216 1.216 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.332 5.332 10 C 0.053 3.947 11 C -0.170 4.170 12 C -0.085 4.085 13 C -0.157 4.157 14 C -0.009 4.009 15 N -0.346 5.346 16 C 0.412 3.588 17 O -0.460 6.460 18 C -0.351 4.351 19 C -0.063 4.063 20 N -0.118 5.118 21 N -0.078 5.078 22 C -0.121 4.121 23 C -0.106 4.106 24 N -0.187 5.187 25 H 0.284 0.716 26 C 0.082 3.918 27 C -0.005 4.005 28 C 0.024 3.976 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.090 0.910 38 H 0.230 0.770 39 H 0.209 0.791 40 H 0.221 0.779 41 H 0.093 0.907 42 H 0.095 0.905 43 H 0.042 0.958 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.215 -15.420 -13.883 20.784 hybrid contribution 0.056 -0.031 0.499 0.503 sum 1.271 -15.451 -13.384 20.481 Atomic orbital electron populations 1.69966 1.04834 1.24962 1.57099 1.24774 0.95676 0.97575 1.02277 0.86157 0.78578 0.83661 0.77585 1.21584 1.21781 1.20768 1.19037 0.90414 0.82378 1.43763 0.90468 1.44588 1.01560 0.99724 1.87330 1.21228 0.84260 0.88054 1.01153 1.22768 0.94977 0.99514 0.99727 1.21574 0.99020 0.94585 0.93286 1.22647 1.00822 0.94345 0.97864 1.22257 0.99803 0.95543 0.83253 1.48327 1.69525 1.11782 1.05015 1.16444 0.76355 0.85371 0.80622 1.90709 1.51300 1.19149 1.84861 1.18357 1.32193 0.95466 0.89132 1.24919 0.92109 0.93087 0.96154 1.77635 1.31220 1.04216 0.98700 1.47184 1.46452 1.07660 1.06532 1.21599 1.11524 0.94950 0.84055 1.22243 1.05514 0.93715 0.89093 1.41538 1.60693 1.11437 1.05040 0.71571 1.19183 0.98764 0.82773 0.91064 1.22142 1.01019 0.82028 0.95288 1.21309 0.93405 0.85707 0.97189 0.93812 0.93550 0.93942 0.92068 0.92015 0.90660 0.89759 0.91622 0.90961 0.76970 0.79107 0.77930 0.90699 0.90491 0.95774 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -26.51 10.30 55.49 0.57 -25.94 16 2 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 3 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.23 -6.13 10.28 -15.06 -0.15 -6.29 16 8 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 9 N -0.61 -14.61 3.41 -170.57 -0.58 -15.19 16 10 C 0.18 4.10 5.36 -2.83 -0.02 4.08 16 11 C -0.13 -2.30 5.79 -25.63 -0.15 -2.44 16 12 C -0.08 -1.33 0.61 -154.09 -0.09 -1.42 16 13 C -0.12 -1.53 6.07 -25.18 -0.15 -1.69 16 14 C 0.11 1.55 6.87 -2.16 -0.01 1.53 16 15 N -0.61 -9.47 3.34 -172.31 -0.58 -10.04 16 16 C 0.62 10.39 7.81 -12.89 -0.10 10.29 16 17 O -0.58 -10.66 17.21 5.18 0.09 -10.57 16 18 C -0.33 -5.26 6.11 -104.83 -0.64 -5.90 16 19 C 0.12 1.92 10.44 -17.00 -0.18 1.74 16 20 N -0.30 -4.87 12.61 30.85 0.39 -4.48 16 21 N -0.31 -4.28 4.67 -11.88 -0.06 -4.33 16 22 C 0.01 0.04 11.91 -16.36 -0.19 -0.15 16 23 C 0.02 0.14 11.92 -16.54 -0.20 -0.06 16 24 N -0.57 -5.42 6.24 -11.99 -0.07 -5.50 16 25 H 0.44 3.39 8.96 -40.82 -0.37 3.03 16 26 C 0.32 4.44 8.38 -154.52 -1.30 3.15 16 27 C 0.12 1.84 4.18 -3.70 -0.02 1.83 16 28 C 0.15 2.88 6.25 -3.25 -0.02 2.86 16 29 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 30 H 0.05 1.19 7.39 -51.93 -0.38 0.80 16 31 H 0.04 1.10 7.49 -51.93 -0.39 0.71 16 32 H 0.06 1.01 7.94 -51.93 -0.41 0.60 16 33 H 0.06 1.00 7.80 -51.93 -0.40 0.60 16 34 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 35 H 0.08 0.98 7.76 -51.93 -0.40 0.58 16 36 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.07 0.96 8.09 -51.93 -0.42 0.54 16 38 H 0.21 3.26 4.49 -52.49 -0.24 3.02 16 39 H 0.19 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.20 0.19 8.06 -52.49 -0.42 -0.23 16 41 H 0.07 1.17 6.12 -51.93 -0.32 0.86 16 42 H 0.08 1.28 6.81 -51.93 -0.35 0.93 16 43 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 44 H 0.04 0.77 7.66 -51.93 -0.40 0.37 16 LS Contribution 353.18 15.07 5.32 5.32 Total: -1.00 -35.35 353.18 -8.99 -44.34 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -5.74 Total: 2.28 kcal Atomic # 6 Polarization: 10.55 SS G_CDS: -3.32 Total: 7.23 kcal Atomic # 7 Polarization: -65.16 SS G_CDS: -0.33 Total: -65.49 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.09 Total: -10.57 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.35 -8.99 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041806145.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.176 kcal (2) G-P(sol) polarization free energy of solvation -35.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds