Wall clock time and date at job start Tue Mar 31 2020 05:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34771 * 120.00669 * 2 1 4 4 O 1.21281 * 119.99881 * 2.76145 * 3 2 1 5 5 C 1.50695 * 120.00117 * 182.76671 * 3 2 1 6 6 H 1.08991 * 109.35885 * 310.23122 * 5 3 2 7 7 C 1.52659 * 109.36257 * 69.82521 * 5 3 2 8 8 N 1.46144 * 110.91662 * 69.54986 * 7 5 3 9 9 C 1.34675 * 120.95639 * 40.42879 * 8 7 5 10 10 O 1.21549 * 120.33504 * 172.44408 * 9 8 7 11 11 C 1.47823 * 119.33332 * 352.42073 * 9 8 7 12 12 C 1.39235 * 121.08609 * 166.70437 * 11 9 8 13 13 C 1.38057 * 119.67497 * 180.31712 * 12 11 9 14 14 C 1.38387 * 120.13726 * 359.45026 * 13 12 11 15 15 C 1.38411 * 120.40726 * 0.26579 * 14 13 12 16 16 C 1.37831 * 119.99855 * 359.70886 * 15 14 13 17 17 C 1.46504 * 119.99302 * 179.97438 * 2 1 3 18 18 C 1.53947 * 113.74507 * 30.78891 * 17 2 1 19 19 N 1.47577 * 86.11686 * 222.04492 * 18 17 2 20 20 C 1.36933 * 134.49310 * 204.64033 * 19 18 17 21 21 H 1.07997 * 120.00376 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00158 * 359.97438 * 20 19 18 23 23 N 1.31622 * 119.99562 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 120.00372 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.46861 * 60.00332 * 24 22 20 26 26 H 1.48504 * 109.47116 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47115 * 300.00258 * 24 22 20 28 28 C 1.47584 * 91.01558 * 24.63823 * 19 18 17 29 29 H 1.09008 * 109.47285 * 87.65559 * 1 2 3 30 30 H 1.08999 * 109.47613 * 207.66157 * 1 2 3 31 31 H 1.09001 * 109.46997 * 327.66258 * 1 2 3 32 32 H 1.08991 * 109.18915 * 189.92647 * 7 5 3 33 33 H 1.09000 * 109.18380 * 309.18552 * 7 5 3 34 34 H 0.97001 * 119.52509 * 220.42071 * 8 7 5 35 35 H 1.08007 * 120.15999 * 0.03822 * 12 11 9 36 36 H 1.08007 * 119.92880 * 179.73376 * 13 12 11 37 37 H 1.07999 * 119.79342 * 180.02562 * 14 13 12 38 38 H 1.07994 * 119.99752 * 179.73200 * 15 14 13 39 39 H 1.09004 * 112.94241 * 162.52161 * 17 2 1 40 40 H 1.08997 * 113.76619 * 336.34542 * 18 17 2 41 41 H 1.08997 * 113.76689 * 107.73836 * 18 17 2 42 42 H 0.97008 * 119.99842 * 179.97438 * 23 22 20 43 43 H 1.08996 * 113.77046 * 221.05721 * 28 19 18 44 44 H 1.09007 * 113.76566 * 89.65976 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1671 0.0000 4 8 1.5337 2.2168 0.0506 5 6 3.6446 1.1677 -0.0630 6 1 4.0380 0.4849 0.6900 7 6 4.0935 0.7039 -1.4464 8 7 3.7734 1.7053 -2.4617 9 6 3.9383 3.0190 -2.2153 10 8 3.8006 3.8329 -3.1074 11 6 4.2880 3.4611 -0.8487 12 6 4.7333 4.7575 -0.6045 13 6 5.0582 5.1375 0.6824 14 6 4.9309 4.2374 1.7258 15 6 4.4830 2.9493 1.4890 16 6 4.1550 2.5581 0.2087 17 6 2.1974 -1.2689 0.0006 18 6 1.4588 -2.4112 -0.7202 19 7 1.8975 -3.2666 0.3994 20 6 2.1144 -4.6099 0.5531 21 1 2.4445 -4.9983 1.5052 22 6 1.9098 -5.4726 -0.5150 23 7 1.5079 -4.9993 -1.6756 24 14 2.2050 -7.3052 -0.3053 25 1 1.3114 -7.8320 0.7575 26 1 1.9178 -8.0024 -1.5847 27 1 3.6207 -7.5380 0.0778 28 6 2.0087 -2.0929 1.2871 29 1 -0.3634 0.0420 -1.0269 30 1 -0.3634 -0.9102 0.4771 31 1 -0.3633 0.8683 0.5497 32 1 5.1703 0.5358 -1.4360 33 1 3.5882 -0.2300 -1.6926 34 1 3.4373 1.4196 -3.3256 35 1 4.8283 5.4610 -1.4184 36 1 5.4081 6.1408 0.8759 37 1 5.1862 4.5407 2.7304 38 1 4.3903 2.2509 2.3075 39 1 3.2390 -1.1584 -0.3010 40 1 0.3788 -2.2731 -0.7706 41 1 1.8994 -2.6828 -1.6795 42 1 1.3654 -5.6021 -2.4221 43 1 2.8883 -2.1104 1.9306 44 1 1.0901 -1.8613 1.8264 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042944070.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:48 Heat of formation + Delta-G solvation = 28.937254 kcal Electronic energy + Delta-G solvation = -28668.666260 eV Core-core repulsion = 24781.234870 eV Total energy + Delta-G solvation = -3887.431390 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.27702 -39.61787 -38.28212 -37.84369 -36.05542 -34.29076 -32.38395 -32.00713 -31.18022 -29.81438 -27.75397 -26.82088 -25.00230 -24.60025 -24.09227 -23.35487 -21.96623 -20.55150 -19.62089 -18.53426 -17.74792 -17.38041 -17.10222 -16.66113 -16.02390 -15.89782 -15.24092 -14.95577 -14.91120 -14.74510 -14.50523 -14.12414 -13.91572 -13.75391 -13.53604 -13.00450 -12.81346 -12.61872 -12.50582 -12.24890 -12.10011 -11.76979 -11.65761 -11.56817 -11.38153 -11.20647 -11.01119 -10.86559 -10.50246 -10.23648 -10.01498 -9.73579 -9.71681 -9.26529 -9.08381 -8.96297 -8.86912 -8.31157 -7.08231 -5.93530 -3.27296 0.72179 1.17389 2.65867 2.76557 3.07462 3.17246 3.30536 3.35679 3.36429 3.73823 4.19974 4.30628 4.38182 4.45525 4.58475 4.72900 4.85216 4.98430 5.06811 5.11356 5.18710 5.21913 5.33842 5.36035 5.38517 5.51763 5.64198 5.66463 5.77732 5.80465 5.92039 6.07957 6.12358 6.21053 6.24710 6.26643 6.34849 6.64748 6.67828 6.77959 6.95924 7.02002 7.07509 7.32993 7.60994 7.79916 8.11904 8.27661 8.87527 9.53869 10.37932 11.23308 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.019964 B = 0.003144 C = 0.003060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1402.164012 B = 8905.016067 C = 9148.200568 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.596 5.596 3 C 0.520 3.480 4 O -0.536 6.536 5 C -0.093 4.093 6 H 0.126 0.874 7 C 0.115 3.885 8 N -0.722 5.722 9 C 0.571 3.429 10 O -0.539 6.539 11 C -0.120 4.120 12 C -0.059 4.059 13 C -0.130 4.130 14 C -0.092 4.092 15 C -0.116 4.116 16 C -0.023 4.023 17 C 0.069 3.931 18 C 0.158 3.842 19 N -0.605 5.605 20 C -0.228 4.228 21 H 0.082 0.918 22 C -0.003 4.003 23 N -0.920 5.920 24 Si 0.914 3.086 25 H -0.284 1.284 26 H -0.289 1.289 27 H -0.283 1.283 28 C 0.107 3.893 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.409 0.591 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.036 0.964 41 H 0.079 0.921 42 H 0.256 0.744 43 H 0.049 0.951 44 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.068 14.453 4.737 16.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.328 5.328 3 C 0.306 3.694 4 O -0.413 6.413 5 C -0.115 4.115 6 H 0.144 0.856 7 C -0.010 4.010 8 N -0.375 5.375 9 C 0.359 3.641 10 O -0.417 6.417 11 C -0.123 4.123 12 C -0.078 4.078 13 C -0.148 4.148 14 C -0.110 4.110 15 C -0.134 4.134 16 C -0.024 4.024 17 C -0.035 4.035 18 C 0.032 3.968 19 N -0.332 5.332 20 C -0.355 4.355 21 H 0.100 0.900 22 C -0.200 4.200 23 N -0.566 5.566 24 Si 0.744 3.256 25 H -0.211 1.211 26 H -0.215 1.215 27 H -0.209 1.209 28 C -0.020 4.020 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.102 0.898 33 H 0.124 0.876 34 H 0.245 0.755 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.129 0.871 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 6.733 15.115 4.356 17.111 hybrid contribution -0.251 -1.463 -0.049 1.485 sum 6.483 13.652 4.308 15.715 Atomic orbital electron populations 1.21609 0.79113 1.02852 1.01884 1.47980 1.07109 1.05830 1.71882 1.20137 0.88746 0.83778 0.76701 1.90705 1.69880 1.31147 1.49602 1.20674 0.94432 0.96184 1.00224 0.85613 1.21518 1.01956 0.92079 0.85482 1.45599 1.68012 1.05784 1.18083 1.18187 0.75807 0.82131 0.87962 1.90781 1.51391 1.52743 1.46795 1.19625 1.04665 0.95177 0.92864 1.21131 0.94998 0.94221 0.97460 1.21149 1.01265 0.99983 0.92436 1.21308 0.97280 0.93187 0.99267 1.20925 0.99869 0.96876 0.95702 1.19410 0.96162 0.93421 0.93454 1.24350 0.97316 0.81290 1.00537 1.22625 0.96168 0.83495 0.94496 1.45691 1.77840 1.01713 1.07909 1.18935 1.39391 0.80034 0.97165 0.90020 1.24795 1.01195 0.98264 0.95780 1.69781 1.51281 1.34057 1.01488 0.86177 0.78092 0.84441 0.76893 1.21101 1.21479 1.20921 1.22996 0.98700 0.86957 0.93335 0.92728 0.90439 0.91221 0.89812 0.87574 0.75458 0.84768 0.85334 0.85463 0.85281 0.87062 0.94585 0.90285 0.93363 0.93292 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.27 9.16 59.85 0.55 1.81 16 2 N -0.60 -8.76 3.08 -175.74 -0.54 -9.31 16 3 C 0.52 7.78 6.79 -10.99 -0.07 7.70 16 4 O -0.54 -9.84 15.66 5.56 0.09 -9.76 16 5 C -0.09 -1.11 1.89 -93.15 -0.18 -1.29 16 6 H 0.13 1.21 7.39 -51.93 -0.38 0.83 16 7 C 0.11 1.24 5.88 -4.41 -0.03 1.22 16 8 N -0.72 -9.16 5.43 -61.71 -0.34 -9.50 16 9 C 0.57 8.73 7.81 -12.38 -0.10 8.63 16 10 O -0.54 -9.76 17.38 5.32 0.09 -9.66 16 11 C -0.12 -1.67 5.78 -105.06 -0.61 -2.28 16 12 C -0.06 -0.72 9.63 -39.28 -0.38 -1.10 16 13 C -0.13 -1.27 10.04 -39.59 -0.40 -1.67 16 14 C -0.09 -0.86 10.04 -39.46 -0.40 -1.26 16 15 C -0.12 -1.23 9.72 -39.67 -0.39 -1.62 16 16 C -0.02 -0.29 4.21 -104.28 -0.44 -0.73 16 17 C 0.07 1.07 3.37 -70.15 -0.24 0.84 16 18 C 0.16 3.21 6.86 -2.98 -0.02 3.19 16 19 N -0.60 -13.72 3.70 -178.10 -0.66 -14.38 16 20 C -0.23 -5.84 10.70 -15.06 -0.16 -6.01 16 21 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 22 C 0.00 -0.08 5.50 -17.43 -0.10 -0.18 16 23 N -0.92 -25.19 11.38 55.49 0.63 -24.56 16 24 Si 0.91 20.73 29.55 -169.99 -5.02 15.71 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 28 C 0.11 1.89 8.48 -2.98 -0.03 1.86 16 29 H 0.05 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.08 1.12 6.32 -51.93 -0.33 0.79 16 31 H 0.07 1.00 7.46 -51.93 -0.39 0.61 16 32 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.11 1.14 5.80 -51.93 -0.30 0.84 16 34 H 0.41 4.74 8.92 -40.82 -0.36 4.37 16 35 H 0.13 1.56 7.79 -52.48 -0.41 1.15 16 36 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 37 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 38 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 39 H 0.11 1.52 4.68 -51.93 -0.24 1.28 16 40 H 0.04 0.76 6.34 -51.93 -0.33 0.43 16 41 H 0.08 1.79 7.15 -51.93 -0.37 1.41 16 42 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.67 7.44 -51.92 -0.39 0.28 16 LS Contribution 357.40 15.07 5.39 5.39 Total: -1.00 -33.42 357.40 -8.92 -42.33 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.59 Total: 4.62 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -2.97 Total: 9.12 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: -0.90 Total: -57.75 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.18 Total: -19.42 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.42 -8.92 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042944070.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.270 kcal (2) G-P(sol) polarization free energy of solvation -33.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.332 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds