Wall clock time and date at job start Tue Mar 31 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99798 * 2 1 4 4 O 1.21281 * 119.99745 * 5.65099 * 3 2 1 5 5 C 1.50698 * 119.99989 * 185.64880 * 3 2 1 6 6 H 1.08999 * 109.35682 * 53.40708 * 5 3 2 7 7 C 1.52649 * 109.35639 * 293.81683 * 5 3 2 8 8 N 1.46136 * 110.97288 * 290.32516 * 7 5 3 9 9 C 1.34688 * 120.98616 * 319.54751 * 8 7 5 10 10 O 1.21551 * 120.36088 * 187.97787 * 9 8 7 11 11 C 1.47831 * 119.27933 * 7.95753 * 9 8 7 12 12 C 1.39316 * 120.92748 * 193.62113 * 11 9 8 13 13 C 1.38066 * 119.60982 * 179.06721 * 12 11 9 14 14 C 1.38387 * 120.16317 * 0.02869 * 13 12 11 15 15 C 1.38406 * 120.41734 * 0.27190 * 14 13 12 16 16 C 1.37844 * 119.97302 * 359.93252 * 15 14 13 17 17 C 1.46496 * 120.00251 * 180.02562 * 2 1 3 18 18 C 1.53504 * 114.20568 * 299.99991 * 17 2 1 19 19 N 1.47064 * 87.98671 * 87.71631 * 18 17 2 20 20 C 1.36935 * 136.05669 * 207.08587 * 19 18 17 21 21 H 1.07997 * 119.99932 * 5.85887 * 20 19 18 22 22 C 1.38815 * 119.99599 * 185.86064 * 20 19 18 23 23 N 1.31615 * 120.00408 * 354.99474 * 22 20 19 24 24 Si 1.86808 * 119.99638 * 174.99539 * 22 20 19 25 25 H 1.48499 * 109.46956 * 275.00533 * 24 22 20 26 26 H 1.48501 * 109.47109 * 35.00397 * 24 22 20 27 27 H 1.48492 * 109.46822 * 155.00538 * 24 22 20 28 28 C 1.47067 * 87.88573 * 27.34163 * 19 18 17 29 29 H 1.09003 * 109.47183 * 264.61492 * 1 2 3 30 30 H 1.08995 * 109.47367 * 24.62008 * 1 2 3 31 31 H 1.09001 * 109.46977 * 144.62124 * 1 2 3 32 32 H 1.08993 * 109.17945 * 50.71126 * 7 5 3 33 33 H 1.09002 * 109.17454 * 169.94378 * 7 5 3 34 34 H 0.96995 * 119.51034 * 139.56750 * 8 7 5 35 35 H 1.07996 * 120.19412 * 359.04603 * 12 11 9 36 36 H 1.07999 * 119.91700 * 180.02562 * 13 12 11 37 37 H 1.07994 * 119.78498 * 180.27000 * 14 13 12 38 38 H 1.07999 * 120.01329 * 179.97438 * 15 14 13 39 39 H 1.09002 * 113.28083 * 166.93225 * 17 2 1 40 40 H 1.09001 * 113.46376 * 332.93467 * 18 17 2 41 41 H 1.08996 * 113.51853 * 202.50722 * 18 17 2 42 42 H 0.96999 * 120.00253 * 180.02562 * 23 22 20 43 43 H 1.08998 * 113.46915 * 87.43636 * 28 19 18 44 44 H 1.09000 * 113.47372 * 217.87518 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5368 2.2150 0.1034 5 6 3.6404 1.1705 -0.1285 6 1 3.9287 0.5996 -1.0111 7 6 4.2556 0.5258 1.1110 8 7 4.0794 1.3773 2.2855 9 6 4.2279 2.7134 2.2019 10 8 4.2223 3.3963 3.2074 11 6 4.3981 3.3402 0.8739 12 6 4.8314 4.6590 0.7549 13 6 4.9996 5.2112 -0.4993 14 6 4.7386 4.4587 -1.6310 15 6 4.3020 3.1503 -1.5173 16 6 4.1262 2.5889 -0.2707 17 6 2.1976 -1.2687 -0.0006 18 6 1.9060 -2.1643 1.2115 19 7 0.7774 -2.7295 0.4570 20 6 -0.4240 -3.3093 0.7666 21 1 -0.7574 -3.3455 1.7931 22 6 -1.2130 -3.8504 -0.2391 23 7 -0.8550 -3.7197 -1.4989 24 14 -2.7833 -4.7643 0.1955 25 1 -2.4616 -6.1797 0.5092 26 1 -3.4159 -4.1266 1.3781 27 1 -3.7205 -4.7129 -0.9551 28 6 1.5095 -2.4040 -0.7763 29 1 -0.3634 -0.0964 1.0231 30 1 -0.3634 0.9342 -0.4281 31 1 -0.3633 -0.8379 -0.5950 32 1 3.7749 -0.4357 1.2905 33 1 5.3204 0.3666 0.9406 34 1 3.8525 0.9743 3.1381 35 1 5.0342 5.2459 1.6385 36 1 5.3357 6.2328 -0.5974 37 1 4.8764 4.8954 -2.6091 38 1 4.0999 2.5691 -2.4049 39 1 3.2576 -1.1539 -0.2269 40 1 1.6007 -1.6087 2.0982 41 1 2.6954 -2.8870 1.4182 42 1 -1.4065 -4.0976 -2.2016 43 1 2.1947 -3.1896 -1.0945 44 1 0.8663 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042944071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:52 Heat of formation + Delta-G solvation = 37.624356 kcal Electronic energy + Delta-G solvation = -28971.476913 eV Core-core repulsion = 25084.422223 eV Total energy + Delta-G solvation = -3887.054689 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.27071 -39.64727 -38.31321 -37.87694 -36.04414 -33.90417 -32.35308 -32.08822 -31.16581 -29.78304 -27.92635 -26.34930 -25.00408 -24.47164 -24.07913 -23.30363 -21.94982 -20.72746 -19.78448 -18.25144 -17.78512 -17.38520 -16.96127 -16.49096 -15.97433 -15.73724 -15.14935 -14.92641 -14.74489 -14.72033 -14.48642 -14.08268 -13.89561 -13.72491 -13.44452 -13.04062 -12.79960 -12.69707 -12.64672 -12.22768 -12.13565 -11.62381 -11.56839 -11.34639 -11.19430 -11.06423 -10.93690 -10.80163 -10.27840 -10.11341 -9.98958 -9.70040 -9.60867 -9.25629 -9.06657 -8.97180 -8.84306 -8.10294 -7.05060 -5.93585 -3.25687 0.73520 1.19310 2.73921 2.79124 3.11227 3.28761 3.31972 3.37382 3.38456 3.77064 4.20226 4.32705 4.38432 4.46432 4.61952 4.73504 4.86669 4.96151 5.04571 5.10089 5.18130 5.22617 5.29522 5.35486 5.38592 5.60490 5.71516 5.81742 5.91818 6.11353 6.16181 6.21808 6.22849 6.28397 6.33596 6.40744 6.65648 6.67785 6.78539 6.88280 6.94099 7.01770 7.06670 7.36044 7.79071 7.86607 8.11512 8.41903 8.88297 9.54740 10.44543 11.23627 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.003269 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.600473 B = 8562.893208 C = 8973.367453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.572 5.572 3 C 0.517 3.483 4 O -0.536 6.536 5 C -0.094 4.094 6 H 0.126 0.874 7 C 0.111 3.889 8 N -0.722 5.722 9 C 0.571 3.429 10 O -0.539 6.539 11 C -0.122 4.122 12 C -0.060 4.060 13 C -0.131 4.131 14 C -0.092 4.092 15 C -0.115 4.115 16 C -0.022 4.022 17 C 0.062 3.938 18 C 0.102 3.898 19 N -0.602 5.602 20 C -0.220 4.220 21 H 0.081 0.919 22 C -0.002 4.002 23 N -0.917 5.917 24 Si 0.909 3.091 25 H -0.288 1.288 26 H -0.280 1.280 27 H -0.290 1.290 28 C 0.148 3.852 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.408 0.592 35 H 0.134 0.866 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.094 0.906 40 H 0.043 0.957 41 H 0.045 0.955 42 H 0.256 0.744 43 H 0.041 0.959 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.737 10.379 -1.214 18.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.302 5.302 3 C 0.304 3.696 4 O -0.414 6.414 5 C -0.115 4.115 6 H 0.144 0.856 7 C -0.013 4.013 8 N -0.375 5.375 9 C 0.359 3.641 10 O -0.417 6.417 11 C -0.125 4.125 12 C -0.078 4.078 13 C -0.149 4.149 14 C -0.110 4.110 15 C -0.133 4.133 16 C -0.023 4.023 17 C -0.043 4.043 18 C -0.026 4.026 19 N -0.328 5.328 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.199 4.199 23 N -0.563 5.563 24 Si 0.739 3.261 25 H -0.215 1.215 26 H -0.206 1.206 27 H -0.216 1.216 28 C 0.021 3.979 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.099 0.901 34 H 0.245 0.755 35 H 0.152 0.848 36 H 0.146 0.854 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.112 0.888 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.066 0.934 43 H 0.059 0.941 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 14.081 11.187 -0.882 18.006 hybrid contribution -1.020 -1.143 0.369 1.576 sum 13.061 10.044 -0.513 16.484 Atomic orbital electron populations 1.21687 0.77482 1.02875 1.02590 1.47337 1.07693 1.04239 1.70981 1.20051 0.88430 0.83803 0.77344 1.90710 1.69799 1.31161 1.49689 1.20693 0.94380 0.95157 1.01317 0.85634 1.21632 1.01497 0.94442 0.83768 1.45580 1.72504 1.06583 1.12836 1.18207 0.75147 0.81980 0.88773 1.90782 1.50633 1.62506 1.37731 1.19622 1.05033 0.95389 0.92433 1.21156 0.95348 0.93110 0.98227 1.21146 1.01433 1.00188 0.92108 1.21306 0.96987 0.93855 0.98869 1.20927 1.00055 0.95811 0.96519 1.19385 0.96083 0.93738 0.93094 1.23100 0.94660 0.84929 1.01642 1.22887 0.91564 0.93450 0.94699 1.45566 1.13919 1.71481 1.01833 1.18857 0.91722 1.30646 0.93463 0.90114 1.24782 0.99226 1.00632 0.95269 1.69797 1.39383 1.48906 0.98223 0.86184 0.82567 0.80006 0.77315 1.21518 1.20607 1.21600 1.22468 0.92574 0.90295 0.92551 0.93203 0.92426 0.87985 0.87499 0.90092 0.75550 0.84773 0.85359 0.85468 0.85262 0.88800 0.93846 0.93796 0.93437 0.94142 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.84 9.45 59.85 0.57 2.40 16 2 N -0.57 -9.55 3.12 -173.55 -0.54 -10.09 16 3 C 0.52 8.35 6.87 -10.99 -0.08 8.28 16 4 O -0.54 -10.75 15.60 5.56 0.09 -10.66 16 5 C -0.09 -1.10 1.91 -93.15 -0.18 -1.28 16 6 H 0.13 1.12 7.46 -51.93 -0.39 0.73 16 7 C 0.11 1.11 5.87 -4.42 -0.03 1.09 16 8 N -0.72 -8.92 5.44 -61.71 -0.34 -9.26 16 9 C 0.57 8.71 7.81 -12.38 -0.10 8.61 16 10 O -0.54 -9.76 17.37 5.32 0.09 -9.67 16 11 C -0.12 -1.70 5.79 -105.06 -0.61 -2.31 16 12 C -0.06 -0.73 9.63 -39.24 -0.38 -1.11 16 13 C -0.13 -1.30 10.04 -39.59 -0.40 -1.70 16 14 C -0.09 -0.88 10.04 -39.46 -0.40 -1.28 16 15 C -0.12 -1.25 9.72 -39.66 -0.39 -1.63 16 16 C -0.02 -0.28 4.19 -104.31 -0.44 -0.71 16 17 C 0.06 0.94 3.26 -67.67 -0.22 0.72 16 18 C 0.10 1.73 7.67 -8.50 -0.07 1.67 16 19 N -0.60 -13.33 2.52 -184.61 -0.46 -13.79 16 20 C -0.22 -5.57 10.55 -15.06 -0.16 -5.73 16 21 H 0.08 2.03 7.83 -52.49 -0.41 1.62 16 22 C 0.00 -0.05 5.50 -17.43 -0.10 -0.14 16 23 N -0.92 -24.80 11.60 55.49 0.64 -24.15 16 24 Si 0.91 20.89 29.56 -169.99 -5.02 15.87 16 25 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 28 C 0.15 2.91 6.39 -8.37 -0.05 2.86 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 1.10 7.35 -51.93 -0.38 0.72 16 31 H 0.10 2.24 5.78 -51.93 -0.30 1.94 16 32 H 0.11 1.01 4.70 -51.93 -0.24 0.76 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.41 4.58 8.92 -40.82 -0.36 4.21 16 35 H 0.13 1.58 7.78 -52.49 -0.41 1.17 16 36 H 0.13 0.92 8.06 -52.49 -0.42 0.49 16 37 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 38 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 39 H 0.09 1.04 5.13 -51.93 -0.27 0.77 16 40 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 43 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.08 1.74 6.35 -51.93 -0.33 1.41 16 LS Contribution 355.70 15.07 5.36 5.36 Total: -1.00 -33.24 355.70 -8.80 -42.04 By element: Atomic # 1 Polarization: 10.22 SS G_CDS: -5.61 Total: 4.61 kcal Atomic # 6 Polarization: 12.74 SS G_CDS: -3.01 Total: 9.74 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: -0.70 Total: -57.29 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: 0.18 Total: -20.33 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.24 -8.80 -42.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042944071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.668 kcal (2) G-P(sol) polarization free energy of solvation -33.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds