Wall clock time and date at job start Tue Mar 31 2020 05:22:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34778 * 119.99798 * 2 1 4 4 O 1.21281 * 119.99745 * 5.65099 * 3 2 1 5 5 C 1.50698 * 119.99989 * 185.64880 * 3 2 1 6 6 H 1.08999 * 109.35682 * 53.40708 * 5 3 2 7 7 C 1.52649 * 109.35639 * 293.81683 * 5 3 2 8 8 N 1.46136 * 110.97288 * 290.32516 * 7 5 3 9 9 C 1.34688 * 120.98616 * 319.54751 * 8 7 5 10 10 O 1.21551 * 120.36088 * 187.97787 * 9 8 7 11 11 C 1.47831 * 119.27933 * 7.95753 * 9 8 7 12 12 C 1.39316 * 120.92748 * 193.62113 * 11 9 8 13 13 C 1.38066 * 119.60982 * 179.06721 * 12 11 9 14 14 C 1.38387 * 120.16317 * 0.02869 * 13 12 11 15 15 C 1.38406 * 120.41734 * 0.27190 * 14 13 12 16 16 C 1.37844 * 119.97302 * 359.93252 * 15 14 13 17 17 C 1.46496 * 120.00251 * 180.02562 * 2 1 3 18 18 C 1.53504 * 114.20568 * 299.99991 * 17 2 1 19 19 N 1.47064 * 87.98671 * 87.71631 * 18 17 2 20 20 C 1.36935 * 136.05669 * 207.08587 * 19 18 17 21 21 H 1.07997 * 119.99932 * 5.85887 * 20 19 18 22 22 C 1.38815 * 119.99599 * 185.86064 * 20 19 18 23 23 N 1.31615 * 120.00408 * 354.99474 * 22 20 19 24 24 Si 1.86808 * 119.99638 * 174.99539 * 22 20 19 25 25 H 1.48499 * 109.46956 * 275.00533 * 24 22 20 26 26 H 1.48501 * 109.47109 * 35.00397 * 24 22 20 27 27 H 1.48492 * 109.46822 * 155.00538 * 24 22 20 28 28 C 1.47067 * 87.88573 * 27.34163 * 19 18 17 29 29 H 1.09003 * 109.47183 * 264.61492 * 1 2 3 30 30 H 1.08995 * 109.47367 * 24.62008 * 1 2 3 31 31 H 1.09001 * 109.46977 * 144.62124 * 1 2 3 32 32 H 1.08993 * 109.17945 * 50.71126 * 7 5 3 33 33 H 1.09002 * 109.17454 * 169.94378 * 7 5 3 34 34 H 0.96995 * 119.51034 * 139.56750 * 8 7 5 35 35 H 1.07996 * 120.19412 * 359.04603 * 12 11 9 36 36 H 1.07999 * 119.91700 * 180.02562 * 13 12 11 37 37 H 1.07994 * 119.78498 * 180.27000 * 14 13 12 38 38 H 1.07999 * 120.01329 * 179.97438 * 15 14 13 39 39 H 1.09002 * 113.28083 * 166.93225 * 17 2 1 40 40 H 1.09001 * 113.46376 * 332.93467 * 18 17 2 41 41 H 1.08996 * 113.51853 * 202.50722 * 18 17 2 42 42 H 0.96999 * 120.00253 * 180.02562 * 23 22 20 43 43 H 1.08998 * 113.46915 * 87.43636 * 28 19 18 44 44 H 1.09000 * 113.47372 * 217.87518 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5368 2.2150 0.1034 5 6 3.6404 1.1705 -0.1285 6 1 3.9287 0.5996 -1.0111 7 6 4.2556 0.5258 1.1110 8 7 4.0794 1.3773 2.2855 9 6 4.2279 2.7134 2.2019 10 8 4.2223 3.3963 3.2074 11 6 4.3981 3.3402 0.8739 12 6 4.8314 4.6590 0.7549 13 6 4.9996 5.2112 -0.4993 14 6 4.7386 4.4587 -1.6310 15 6 4.3020 3.1503 -1.5173 16 6 4.1262 2.5889 -0.2707 17 6 2.1976 -1.2687 -0.0006 18 6 1.9060 -2.1643 1.2115 19 7 0.7774 -2.7295 0.4570 20 6 -0.4240 -3.3093 0.7666 21 1 -0.7574 -3.3455 1.7931 22 6 -1.2130 -3.8504 -0.2391 23 7 -0.8550 -3.7197 -1.4989 24 14 -2.7833 -4.7643 0.1955 25 1 -2.4616 -6.1797 0.5092 26 1 -3.4159 -4.1266 1.3781 27 1 -3.7205 -4.7129 -0.9551 28 6 1.5095 -2.4040 -0.7763 29 1 -0.3634 -0.0964 1.0231 30 1 -0.3634 0.9342 -0.4281 31 1 -0.3633 -0.8379 -0.5950 32 1 3.7749 -0.4357 1.2905 33 1 5.3204 0.3666 0.9406 34 1 3.8525 0.9743 3.1381 35 1 5.0342 5.2459 1.6385 36 1 5.3357 6.2328 -0.5974 37 1 4.8764 4.8954 -2.6091 38 1 4.0999 2.5691 -2.4049 39 1 3.2576 -1.1539 -0.2269 40 1 1.6007 -1.6087 2.0982 41 1 2.6954 -2.8870 1.4182 42 1 -1.4065 -4.0976 -2.2016 43 1 2.1947 -3.1896 -1.0945 44 1 0.8663 -2.0528 -1.5831 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042944071.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:52 Heat of formation + Delta-G solvation = 14.764023 kcal Electronic energy + Delta-G solvation = -28972.468211 eV Core-core repulsion = 25084.422223 eV Total energy + Delta-G solvation = -3888.045988 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.33421 -40.91443 -39.53534 -39.02246 -37.08774 -35.43660 -33.91087 -33.31208 -32.00706 -30.79020 -29.61294 -27.76409 -26.39925 -25.71880 -24.97578 -24.73617 -22.94057 -22.06687 -20.91914 -19.52114 -18.82454 -18.53732 -18.33782 -17.74474 -17.21569 -16.81140 -16.76551 -16.08753 -16.03310 -15.79064 -15.58270 -15.44224 -15.33944 -14.67896 -14.56215 -14.47828 -14.19213 -13.85193 -13.61009 -13.33607 -13.29790 -13.11938 -13.02186 -12.78163 -12.61945 -12.48672 -12.43893 -12.03805 -11.94362 -11.72203 -11.31854 -11.11333 -11.00756 -10.81509 -10.24414 -9.90237 -9.73713 -9.54973 -8.83685 -7.88809 -5.17746 -0.16033 0.36141 1.46840 1.48489 1.52067 1.54658 1.77965 1.98580 2.20816 2.48992 2.84164 3.28589 3.33064 3.47834 3.49870 3.56238 3.62269 3.73315 3.90831 4.17120 4.25746 4.34025 4.42002 4.44614 4.48787 4.54048 4.58441 4.68471 4.72629 4.84127 4.88876 4.98037 5.03101 5.09458 5.31349 5.31843 5.35159 5.41509 5.48626 5.49807 5.61448 5.77862 5.96458 5.97254 6.07270 6.53430 6.96316 7.07317 7.12027 7.64866 8.63407 9.27916 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.023394 B = 0.003269 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.600473 B = 8562.893208 C = 8973.367453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.576 5.576 3 C 0.518 3.482 4 O -0.579 6.579 5 C -0.088 4.088 6 H 0.167 0.833 7 C 0.108 3.892 8 N -0.718 5.718 9 C 0.560 3.440 10 O -0.585 6.585 11 C -0.149 4.149 12 C -0.079 4.079 13 C -0.127 4.127 14 C -0.087 4.087 15 C -0.120 4.120 16 C -0.036 4.036 17 C 0.092 3.908 18 C 0.103 3.897 19 N -0.633 5.633 20 C -0.216 4.216 21 H 0.075 0.925 22 C -0.054 4.054 23 N -0.942 5.942 24 Si 0.961 3.039 25 H -0.288 1.288 26 H -0.277 1.277 27 H -0.298 1.298 28 C 0.144 3.856 29 H 0.033 0.967 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.122 0.878 34 H 0.411 0.589 35 H 0.127 0.873 36 H 0.156 0.844 37 H 0.161 0.839 38 H 0.153 0.847 39 H 0.154 0.846 40 H 0.039 0.961 41 H 0.078 0.922 42 H 0.247 0.753 43 H 0.048 0.952 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.380 10.479 -2.234 20.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.031 4.031 2 N -0.306 5.306 3 C 0.307 3.693 4 O -0.459 6.459 5 C -0.109 4.109 6 H 0.184 0.816 7 C -0.016 4.016 8 N -0.369 5.369 9 C 0.350 3.650 10 O -0.467 6.467 11 C -0.152 4.152 12 C -0.098 4.098 13 C -0.145 4.145 14 C -0.105 4.105 15 C -0.138 4.138 16 C -0.037 4.037 17 C -0.013 4.013 18 C -0.023 4.023 19 N -0.360 5.360 20 C -0.345 4.345 21 H 0.093 0.907 22 C -0.248 4.248 23 N -0.591 5.591 24 Si 0.791 3.209 25 H -0.215 1.215 26 H -0.202 1.202 27 H -0.225 1.225 28 C 0.017 3.983 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.248 0.752 35 H 0.145 0.855 36 H 0.174 0.826 37 H 0.179 0.821 38 H 0.170 0.830 39 H 0.171 0.829 40 H 0.058 0.942 41 H 0.095 0.905 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 16.765 11.255 -1.890 20.281 hybrid contribution -1.815 -1.079 0.692 2.222 sum 14.951 10.176 -1.198 18.125 Atomic orbital electron populations 1.21269 0.79853 1.01263 1.00764 1.47411 1.06556 1.05435 1.71156 1.20875 0.90370 0.82504 0.75558 1.90697 1.71249 1.32625 1.51280 1.20834 0.90264 0.95943 1.03854 0.81570 1.21940 1.03936 0.93722 0.81978 1.45652 1.71240 1.06048 1.13963 1.18608 0.74692 0.82753 0.88982 1.90740 1.53102 1.63694 1.39160 1.19735 1.06940 0.96357 0.92216 1.21320 0.96209 0.92967 0.99292 1.21501 1.00254 1.01488 0.91227 1.21754 0.95191 0.93394 1.00168 1.21316 0.99293 0.96601 0.96573 1.19508 0.96770 0.94102 0.93314 1.23032 0.96644 0.82797 0.98786 1.23113 0.90469 0.93900 0.94843 1.45812 1.14516 1.71369 1.04303 1.19050 0.93276 1.29091 0.93061 0.90676 1.25346 1.01743 1.02280 0.95408 1.69935 1.40184 1.50350 0.98604 0.85359 0.79981 0.78922 0.76662 1.21543 1.20201 1.22489 1.22497 0.92259 0.92172 0.91341 0.94845 0.92883 0.90862 0.86474 0.86059 0.75226 0.85513 0.82588 0.82129 0.82954 0.82929 0.94232 0.90500 0.94390 0.93426 0.93944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.40 9.45 127.77 1.21 5.61 16 2 N -0.58 -18.31 3.12 -821.37 -2.56 -20.87 16 3 C 0.52 15.66 6.87 87.66 0.60 16.26 16 4 O -0.58 -22.89 15.60 -3.03 -0.05 -22.93 16 5 C -0.09 -1.72 1.91 -12.43 -0.02 -1.74 16 6 H 0.17 1.92 7.46 -2.39 -0.02 1.90 16 7 C 0.11 1.69 5.87 86.33 0.51 2.20 16 8 N -0.72 -16.43 5.44 -467.49 -2.54 -18.97 16 9 C 0.56 16.94 7.81 86.80 0.68 17.62 16 10 O -0.59 -21.90 17.37 -3.88 -0.07 -21.97 16 11 C -0.15 -4.02 5.79 -20.15 -0.12 -4.14 16 12 C -0.08 -1.89 9.63 22.49 0.22 -1.67 16 13 C -0.13 -2.20 10.04 22.26 0.22 -1.97 16 14 C -0.09 -1.34 10.04 22.35 0.22 -1.11 16 15 C -0.12 -2.15 9.72 22.22 0.22 -1.93 16 16 C -0.04 -0.80 4.19 -19.66 -0.08 -0.89 16 17 C 0.09 2.49 3.26 45.55 0.15 2.64 16 18 C 0.10 3.22 7.67 83.18 0.64 3.86 16 19 N -0.63 -27.60 2.52 -737.98 -1.86 -29.46 16 20 C -0.22 -11.03 10.55 84.03 0.89 -10.14 16 21 H 0.08 3.80 7.83 -2.91 -0.02 3.78 16 22 C -0.05 -2.84 5.50 84.86 0.47 -2.37 16 23 N -0.94 -52.15 11.60 21.65 0.25 -51.90 16 24 Si 0.96 43.76 29.56 68.60 2.03 45.79 16 25 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 26 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 27 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 28 C 0.14 5.47 6.39 83.27 0.53 6.00 16 29 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.05 2.09 7.35 -2.39 -0.02 2.07 16 31 H 0.07 3.34 5.78 -2.39 -0.01 3.33 16 32 H 0.12 1.60 4.70 -2.39 -0.01 1.58 16 33 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.41 8.69 8.92 -92.71 -0.83 7.86 16 35 H 0.13 3.08 7.78 -2.91 -0.02 3.05 16 36 H 0.16 1.73 8.06 -2.91 -0.02 1.70 16 37 H 0.16 1.36 8.06 -2.91 -0.02 1.34 16 38 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 39 H 0.15 2.42 5.13 -2.39 -0.01 2.41 16 40 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 42 H 0.25 13.58 8.31 -92.71 -0.77 12.81 16 43 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.04 1.93 6.35 -2.39 -0.02 1.91 16 Total: -1.00 -77.70 355.70 1.75 -75.95 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.22 Total: 16.16 kcal Atomic # 6 Polarization: 21.88 SS G_CDS: 6.32 Total: 28.20 kcal Atomic # 7 Polarization: -114.49 SS G_CDS: -6.71 Total: -121.20 kcal Atomic # 8 Polarization: -44.79 SS G_CDS: -0.11 Total: -44.91 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -77.70 1.75 -75.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042944071.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.717 kcal (2) G-P(sol) polarization free energy of solvation -77.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds