Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99860 * 2 1 4 4 O 1.21278 * 120.00524 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99740 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.46652 * 180.02562 * 5 3 2 7 7 C 1.38304 * 119.80897 * 90.00635 * 6 5 3 8 8 C 1.38394 * 119.82214 * 179.97438 * 7 6 5 9 9 C 1.37683 * 119.91709 * 359.97438 * 8 7 6 10 10 C 1.38899 * 120.80447 * 0.02562 * 9 8 7 11 11 C 1.37934 * 119.81205 * 269.72580 * 6 5 3 12 12 N 1.39536 * 110.22826 * 179.97438 * 10 9 8 13 13 C 1.34371 * 112.24434 * 359.97438 * 12 10 9 14 14 O 1.21294 * 126.43909 * 180.02562 * 13 12 10 15 15 C 1.51131 * 132.85213 * 179.97438 * 9 8 7 16 16 C 1.46499 * 120.00251 * 179.97438 * 2 1 3 17 17 C 1.53496 * 114.20781 * 300.00074 * 16 2 1 18 18 N 1.47062 * 87.98485 * 87.52018 * 17 16 2 19 19 C 1.36939 * 136.05593 * 207.08750 * 18 17 16 20 20 H 1.08003 * 120.00327 * 7.87536 * 19 18 17 21 21 C 1.38817 * 119.99828 * 187.87353 * 19 18 17 22 22 N 1.31615 * 119.99974 * 195.16153 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 15.16580 * 21 19 18 24 24 H 1.48500 * 109.47169 * 269.99869 * 23 21 19 25 25 H 1.48496 * 109.47363 * 29.99492 * 23 21 19 26 26 H 1.48496 * 109.47282 * 149.99589 * 23 21 19 27 27 C 1.47066 * 87.88897 * 27.34222 * 18 17 16 28 28 H 1.09003 * 109.47063 * 269.99679 * 1 2 3 29 29 H 1.08997 * 109.47434 * 30.00056 * 1 2 3 30 30 H 1.09003 * 109.47218 * 150.00398 * 1 2 3 31 31 H 1.08999 * 109.46970 * 300.00188 * 5 3 2 32 32 H 1.08992 * 109.47185 * 60.00276 * 5 3 2 33 33 H 1.07995 * 120.09242 * 359.96544 * 7 6 5 34 34 H 1.08004 * 120.04349 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.93218 * 359.97438 * 11 6 5 36 36 H 0.97003 * 123.87564 * 179.97438 * 12 10 9 37 37 H 1.09003 * 110.51256 * 298.68328 * 15 9 8 38 38 H 1.08996 * 110.51077 * 61.39545 * 15 9 8 39 39 H 1.08996 * 113.27978 * 166.93212 * 16 2 1 40 40 H 1.09002 * 113.46562 * 332.74173 * 17 16 2 41 41 H 1.09006 * 113.51939 * 202.31074 * 17 16 2 42 42 H 0.97001 * 120.00280 * 354.91323 * 22 21 19 43 43 H 1.08997 * 113.47168 * 87.43597 * 27 18 17 44 44 H 1.09000 * 113.47164 * 217.88422 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1674 -0.0005 5 6 1.3852 2.4723 -0.0006 6 6 2.3645 3.6178 -0.0011 7 6 2.8112 4.1399 -1.2014 8 6 3.7101 5.1922 -1.2022 9 6 4.1558 5.7154 -0.0092 10 6 3.7147 5.1998 1.2027 11 6 2.8058 4.1433 1.1955 12 7 4.3033 5.8895 2.2634 13 6 5.1326 6.8591 1.8419 14 8 5.7760 7.6118 2.5424 15 6 5.1129 6.8354 0.3283 16 6 2.1975 -1.2687 0.0006 17 6 1.9060 -2.1632 1.2134 18 7 0.7744 -2.7256 0.4612 19 6 -0.4279 -3.3020 0.7733 20 1 -0.7746 -3.3082 1.7962 21 6 -1.2013 -3.8784 -0.2251 22 7 -2.4661 -4.1616 0.0032 23 14 -0.4467 -4.2522 -1.8924 24 1 -0.6132 -3.0777 -2.7857 25 1 0.9993 -4.5467 -1.7266 26 1 -1.1261 -5.4294 -2.4906 27 6 1.5048 -2.4023 -0.7736 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7589 2.5298 -0.8908 32 1 0.7583 2.5303 0.8891 33 1 2.4596 3.7276 -2.1355 34 1 4.0616 5.6024 -2.1374 35 1 2.4484 3.7332 2.1286 36 1 4.1333 5.6916 3.1977 37 1 6.1070 6.6192 -0.0631 38 1 4.7448 7.7834 -0.0638 39 1 3.2575 -1.1542 -0.2259 40 1 1.6039 -1.6067 2.1006 41 1 2.6939 -2.8881 1.4187 42 1 -2.8388 -4.0365 0.8900 43 1 2.1874 -3.1898 -1.0931 44 1 0.8610 -2.0494 -1.5792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042952981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = 40.375298 kcal Electronic energy + Delta-G solvation = -27415.158752 eV Core-core repulsion = 23528.223352 eV Total energy + Delta-G solvation = -3886.935400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.70736 -40.19614 -38.90539 -37.96966 -36.09518 -34.30286 -33.14414 -32.37973 -30.53414 -29.90287 -28.32082 -26.58386 -26.10826 -25.32423 -23.05786 -22.80197 -21.80658 -21.16140 -20.04245 -18.52455 -17.99985 -17.54158 -17.03469 -16.83692 -16.32695 -16.13623 -15.76811 -15.54651 -14.87341 -14.79186 -14.38759 -14.14144 -13.91259 -13.81680 -13.42047 -13.35365 -13.02280 -12.94560 -12.86416 -12.58452 -12.22885 -12.13608 -11.84821 -11.50993 -11.36931 -11.22668 -11.03594 -10.90494 -10.63876 -10.53427 -10.26636 -9.71203 -9.70753 -9.30654 -8.98501 -8.77509 -8.28601 -8.21913 -7.27185 -6.38334 -3.31674 0.88284 1.04830 2.13896 2.67273 2.75890 3.15105 3.32448 3.41884 3.55207 3.57049 3.78092 4.08379 4.47953 4.49800 4.52789 4.64651 4.82257 4.82918 4.99916 5.03062 5.09375 5.14922 5.17512 5.31311 5.33226 5.50357 5.52633 5.63366 5.78500 5.81723 5.86055 6.00432 6.08784 6.17008 6.20091 6.22554 6.31907 6.34955 6.37152 6.43941 6.60767 6.73189 6.95638 7.02762 7.61527 7.71304 8.15559 8.35433 8.88702 9.41101 10.28653 11.10727 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.002386 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.750022 B =11730.140206 C =11926.230123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.581 5.581 3 C 0.514 3.486 4 O -0.543 6.543 5 C -0.103 4.103 6 C -0.024 4.024 7 C -0.121 4.121 8 C -0.065 4.065 9 C -0.147 4.147 10 C 0.138 3.862 11 C -0.120 4.120 12 N -0.659 5.659 13 C 0.528 3.472 14 O -0.510 6.510 15 C -0.113 4.113 16 C 0.099 3.901 17 C 0.105 3.895 18 N -0.622 5.622 19 C -0.302 4.302 20 H 0.081 0.919 21 C -0.023 4.023 22 N -0.930 5.930 23 Si 1.059 2.941 24 H -0.293 1.293 25 H -0.282 1.282 26 H -0.295 1.295 27 C 0.091 3.909 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.098 0.902 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.125 0.875 36 H 0.413 0.587 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.105 0.895 40 H 0.046 0.954 41 H 0.045 0.955 42 H 0.262 0.738 43 H 0.057 0.943 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.879 20.093 -2.339 22.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.312 5.312 3 C 0.302 3.698 4 O -0.421 6.421 5 C -0.143 4.143 6 C -0.025 4.025 7 C -0.140 4.140 8 C -0.083 4.083 9 C -0.149 4.149 10 C 0.042 3.958 11 C -0.141 4.141 12 N -0.302 5.302 13 C 0.317 3.683 14 O -0.385 6.385 15 C -0.152 4.152 16 C -0.006 4.006 17 C -0.022 4.022 18 N -0.350 5.350 19 C -0.429 4.429 20 H 0.099 0.901 21 C -0.223 4.223 22 N -0.572 5.572 23 Si 0.890 3.110 24 H -0.221 1.221 25 H -0.208 1.208 26 H -0.223 1.223 27 C -0.035 4.035 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.117 0.883 31 H 0.126 0.874 32 H 0.123 0.877 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.143 0.857 36 H 0.251 0.749 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.123 0.877 40 H 0.065 0.935 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.335 19.895 -3.452 22.684 hybrid contribution 0.080 -0.029 2.182 2.183 sum 10.415 19.866 -1.270 22.467 Atomic orbital electron populations 1.21890 0.78190 1.03422 1.02603 1.47404 1.07568 1.04675 1.71552 1.20363 0.87931 0.84839 0.76672 1.90691 1.13750 1.87365 1.50277 1.20748 0.97465 0.90385 1.05715 1.19019 0.96347 0.94623 0.92503 1.20936 0.98495 0.96856 0.97702 1.20191 0.96237 0.95674 0.96234 1.19747 1.01985 1.00063 0.93141 1.18012 0.96059 0.94731 0.87024 1.20161 0.98948 0.96316 0.98694 1.43731 1.43670 1.33620 1.09167 1.20637 0.77624 0.78816 0.91267 1.90819 1.43215 1.41047 1.63463 1.21031 1.01477 0.99555 0.93167 1.22496 0.95727 0.83072 0.99315 1.22809 0.90632 0.93626 0.95154 1.46421 1.14832 1.72564 1.01228 1.20114 0.91269 1.34775 0.96699 0.90101 1.25733 0.95208 0.97714 1.03596 1.70904 1.10742 1.52116 1.23441 0.83822 0.75004 0.76652 0.75497 1.22123 1.20836 1.22250 1.23099 0.94263 0.93754 0.92409 0.92515 0.92457 0.88330 0.87442 0.87731 0.85241 0.85254 0.85680 0.74921 0.85970 0.86021 0.87689 0.93546 0.93741 0.92803 0.92542 0.92609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 9.34 59.85 0.56 1.80 16 2 N -0.58 -9.10 3.12 -173.55 -0.54 -9.64 16 3 C 0.51 7.40 7.67 -10.98 -0.08 7.32 16 4 O -0.54 -9.46 15.54 5.56 0.09 -9.37 16 5 C -0.10 -1.04 4.37 -29.03 -0.13 -1.17 16 6 C -0.02 -0.24 4.36 -104.71 -0.46 -0.70 16 7 C -0.12 -1.12 9.71 -39.50 -0.38 -1.51 16 8 C -0.06 -0.54 10.04 -39.73 -0.40 -0.94 16 9 C -0.15 -1.30 6.35 -104.37 -0.66 -1.96 16 10 C 0.14 1.35 7.11 -83.69 -0.60 0.75 16 11 C -0.12 -1.21 9.71 -39.27 -0.38 -1.59 16 12 N -0.66 -5.98 5.88 -9.70 -0.06 -6.04 16 13 C 0.53 5.37 8.71 -10.83 -0.09 5.27 16 14 O -0.51 -6.87 18.03 5.55 0.10 -6.77 16 15 C -0.11 -0.84 6.88 -28.48 -0.20 -1.03 16 16 C 0.10 1.71 4.69 -67.68 -0.32 1.40 16 17 C 0.11 2.00 8.31 -8.50 -0.07 1.93 16 18 N -0.62 -14.01 2.33 -184.61 -0.43 -14.44 16 19 C -0.30 -8.01 10.64 -15.06 -0.16 -8.17 16 20 H 0.08 2.30 8.06 -52.48 -0.42 1.88 16 21 C -0.02 -0.64 5.50 -17.43 -0.10 -0.73 16 22 N -0.93 -27.71 13.70 55.49 0.76 -26.95 16 23 Si 1.06 25.09 25.50 -169.99 -4.34 20.75 16 24 H -0.29 -6.58 6.97 56.52 0.39 -6.19 16 25 H -0.28 -6.26 5.66 56.52 0.32 -5.94 16 26 H -0.30 -7.21 7.11 56.52 0.40 -6.81 16 27 C 0.09 1.79 4.63 -8.36 -0.04 1.75 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.06 0.65 6.44 -51.93 -0.33 0.32 16 30 H 0.10 1.87 5.38 -51.93 -0.28 1.59 16 31 H 0.11 0.87 7.34 -51.93 -0.38 0.49 16 32 H 0.10 0.90 8.04 -51.93 -0.42 0.48 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.13 0.74 8.06 -52.48 -0.42 0.32 16 35 H 0.13 1.11 8.06 -52.48 -0.42 0.69 16 36 H 0.41 3.04 8.96 -40.82 -0.37 2.67 16 37 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.12 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.11 1.75 7.29 -51.93 -0.38 1.37 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.26 7.73 8.73 -40.82 -0.36 7.37 16 43 H 0.06 1.09 7.02 -51.93 -0.36 0.73 16 44 H 0.06 1.12 5.36 -51.93 -0.28 0.84 16 LS Contribution 359.37 15.07 5.42 5.42 Total: -1.00 -33.98 359.37 -8.35 -42.33 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -5.85 Total: 2.29 kcal Atomic # 6 Polarization: 5.92 SS G_CDS: -3.50 Total: 2.42 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.27 Total: -57.07 kcal Atomic # 8 Polarization: -16.32 SS G_CDS: 0.19 Total: -16.14 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -4.34 Total: 20.75 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.98 -8.35 -42.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042952981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.708 kcal (2) G-P(sol) polarization free energy of solvation -33.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds