Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 119.99860 * 2 1 4 4 O 1.21278 * 120.00524 * 180.02562 * 3 2 1 5 5 C 1.50709 * 119.99740 * 359.97438 * 3 2 1 6 6 C 1.50703 * 109.46652 * 180.02562 * 5 3 2 7 7 C 1.38304 * 119.80897 * 90.00635 * 6 5 3 8 8 C 1.38394 * 119.82214 * 179.97438 * 7 6 5 9 9 C 1.37683 * 119.91709 * 359.97438 * 8 7 6 10 10 C 1.38899 * 120.80447 * 0.02562 * 9 8 7 11 11 C 1.37934 * 119.81205 * 269.72580 * 6 5 3 12 12 N 1.39536 * 110.22826 * 179.97438 * 10 9 8 13 13 C 1.34371 * 112.24434 * 359.97438 * 12 10 9 14 14 O 1.21294 * 126.43909 * 180.02562 * 13 12 10 15 15 C 1.51131 * 132.85213 * 179.97438 * 9 8 7 16 16 C 1.46499 * 120.00251 * 179.97438 * 2 1 3 17 17 C 1.53496 * 114.20781 * 300.00074 * 16 2 1 18 18 N 1.47062 * 87.98485 * 87.52018 * 17 16 2 19 19 C 1.36939 * 136.05593 * 207.08750 * 18 17 16 20 20 H 1.08003 * 120.00327 * 7.87536 * 19 18 17 21 21 C 1.38817 * 119.99828 * 187.87353 * 19 18 17 22 22 N 1.31615 * 119.99974 * 195.16153 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 15.16580 * 21 19 18 24 24 H 1.48500 * 109.47169 * 269.99869 * 23 21 19 25 25 H 1.48496 * 109.47363 * 29.99492 * 23 21 19 26 26 H 1.48496 * 109.47282 * 149.99589 * 23 21 19 27 27 C 1.47066 * 87.88897 * 27.34222 * 18 17 16 28 28 H 1.09003 * 109.47063 * 269.99679 * 1 2 3 29 29 H 1.08997 * 109.47434 * 30.00056 * 1 2 3 30 30 H 1.09003 * 109.47218 * 150.00398 * 1 2 3 31 31 H 1.08999 * 109.46970 * 300.00188 * 5 3 2 32 32 H 1.08992 * 109.47185 * 60.00276 * 5 3 2 33 33 H 1.07995 * 120.09242 * 359.96544 * 7 6 5 34 34 H 1.08004 * 120.04349 * 179.97438 * 8 7 6 35 35 H 1.08005 * 119.93218 * 359.97438 * 11 6 5 36 36 H 0.97003 * 123.87564 * 179.97438 * 12 10 9 37 37 H 1.09003 * 110.51256 * 298.68328 * 15 9 8 38 38 H 1.08996 * 110.51077 * 61.39545 * 15 9 8 39 39 H 1.08996 * 113.27978 * 166.93212 * 16 2 1 40 40 H 1.09002 * 113.46562 * 332.74173 * 17 16 2 41 41 H 1.09006 * 113.51939 * 202.31074 * 17 16 2 42 42 H 0.97001 * 120.00280 * 354.91323 * 22 21 19 43 43 H 1.08997 * 113.47168 * 87.43597 * 27 18 17 44 44 H 1.09000 * 113.47164 * 217.88422 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1674 -0.0005 5 6 1.3852 2.4723 -0.0006 6 6 2.3645 3.6178 -0.0011 7 6 2.8112 4.1399 -1.2014 8 6 3.7101 5.1922 -1.2022 9 6 4.1558 5.7154 -0.0092 10 6 3.7147 5.1998 1.2027 11 6 2.8058 4.1433 1.1955 12 7 4.3033 5.8895 2.2634 13 6 5.1326 6.8591 1.8419 14 8 5.7760 7.6118 2.5424 15 6 5.1129 6.8354 0.3283 16 6 2.1975 -1.2687 0.0006 17 6 1.9060 -2.1632 1.2134 18 7 0.7744 -2.7256 0.4612 19 6 -0.4279 -3.3020 0.7733 20 1 -0.7746 -3.3082 1.7962 21 6 -1.2013 -3.8784 -0.2251 22 7 -2.4661 -4.1616 0.0032 23 14 -0.4467 -4.2522 -1.8924 24 1 -0.6132 -3.0777 -2.7857 25 1 0.9993 -4.5467 -1.7266 26 1 -1.1261 -5.4294 -2.4906 27 6 1.5048 -2.4023 -0.7736 28 1 -0.3633 -0.0001 1.0277 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3634 -0.8900 -0.5138 31 1 0.7589 2.5298 -0.8908 32 1 0.7583 2.5303 0.8891 33 1 2.4596 3.7276 -2.1355 34 1 4.0616 5.6024 -2.1374 35 1 2.4484 3.7332 2.1286 36 1 4.1333 5.6916 3.1977 37 1 6.1070 6.6192 -0.0631 38 1 4.7448 7.7834 -0.0638 39 1 3.2575 -1.1542 -0.2259 40 1 1.6039 -1.6067 2.1006 41 1 2.6939 -2.8881 1.4187 42 1 -2.8388 -4.0365 0.8900 43 1 2.1874 -3.1898 -1.0931 44 1 0.8610 -2.0494 -1.5792 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042952981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = 17.514440 kcal Electronic energy + Delta-G solvation = -27416.150073 eV Core-core repulsion = 23528.223352 eV Total energy + Delta-G solvation = -3887.926721 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.41619 -41.46831 -39.94031 -39.13381 -36.90089 -35.67096 -34.43187 -33.78758 -31.37423 -30.56893 -29.98654 -27.69751 -27.20553 -26.88642 -24.37083 -23.73502 -22.57760 -22.22858 -21.21397 -20.00136 -19.24560 -18.75701 -18.21027 -17.68952 -17.38862 -17.04160 -16.78035 -16.55064 -16.29666 -15.84095 -15.59034 -15.37845 -15.20593 -15.09331 -14.67657 -14.31662 -14.13933 -13.97146 -13.74441 -13.40503 -13.33717 -13.22920 -12.94953 -12.88635 -12.66250 -12.62509 -12.27741 -11.97650 -11.88629 -11.78432 -11.46804 -11.33696 -11.25627 -10.91055 -10.72935 -9.66941 -9.54427 -9.20471 -8.99242 -8.55088 -5.40942 0.18303 0.36560 1.40106 1.43254 1.54454 1.63993 1.68854 1.96277 2.05929 2.56265 2.81321 3.01344 3.11913 3.22510 3.45106 3.60596 3.72594 3.83106 3.91850 4.17059 4.25739 4.35997 4.38685 4.40837 4.50456 4.51122 4.55518 4.62625 4.67511 4.68651 4.74836 4.81568 4.89567 4.95616 4.98637 5.14640 5.19330 5.25545 5.43517 5.53905 5.62339 5.68716 5.74896 6.00051 6.06262 6.52426 6.74707 6.88767 7.19956 7.37131 8.31923 8.95674 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.029630 B = 0.002386 C = 0.002347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.750022 B =11730.140206 C =11926.230123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.587 5.587 3 C 0.517 3.483 4 O -0.572 6.572 5 C -0.096 4.096 6 C -0.041 4.041 7 C -0.127 4.127 8 C -0.065 4.065 9 C -0.147 4.147 10 C 0.120 3.880 11 C -0.131 4.131 12 N -0.656 5.656 13 C 0.522 3.478 14 O -0.552 6.552 15 C -0.105 4.105 16 C 0.118 3.882 17 C 0.104 3.896 18 N -0.644 5.644 19 C -0.279 4.279 20 H 0.047 0.953 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 1.095 2.905 24 H -0.272 1.272 25 H -0.258 1.258 26 H -0.309 1.309 27 C 0.089 3.911 28 H 0.045 0.955 29 H 0.100 0.900 30 H 0.061 0.939 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.158 0.842 35 H 0.128 0.872 36 H 0.417 0.583 37 H 0.140 0.860 38 H 0.146 0.854 39 H 0.119 0.881 40 H 0.041 0.959 41 H 0.060 0.940 42 H 0.247 0.753 43 H 0.069 0.931 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.388 21.880 -4.417 25.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.318 5.318 3 C 0.307 3.693 4 O -0.452 6.452 5 C -0.135 4.135 6 C -0.042 4.042 7 C -0.145 4.145 8 C -0.083 4.083 9 C -0.150 4.150 10 C 0.024 3.976 11 C -0.152 4.152 12 N -0.298 5.298 13 C 0.312 3.688 14 O -0.430 6.430 15 C -0.144 4.144 16 C 0.012 3.988 17 C -0.022 4.022 18 N -0.373 5.373 19 C -0.406 4.406 20 H 0.065 0.935 21 C -0.270 4.270 22 N -0.613 5.613 23 Si 0.921 3.079 24 H -0.199 1.199 25 H -0.182 1.182 26 H -0.237 1.237 27 C -0.036 4.036 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.080 0.920 31 H 0.152 0.848 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.176 0.824 35 H 0.146 0.854 36 H 0.255 0.745 37 H 0.158 0.842 38 H 0.164 0.836 39 H 0.137 0.863 40 H 0.059 0.941 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.087 0.913 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 11.869 21.707 -5.519 25.348 hybrid contribution -0.333 -0.530 2.938 3.004 sum 11.536 21.177 -2.581 24.253 Atomic orbital electron populations 1.21794 0.77940 1.03678 1.01948 1.47507 1.07662 1.04629 1.71988 1.21052 0.87711 0.85482 0.75063 1.90679 1.15283 1.87798 1.51441 1.20783 0.97367 0.87627 1.07737 1.19124 0.97057 0.95051 0.92942 1.21237 0.98372 0.96963 0.97972 1.20514 0.95522 0.95120 0.97116 1.20015 1.01797 1.00115 0.93078 1.18170 0.96676 0.95227 0.87566 1.20307 0.99212 0.96600 0.99097 1.43760 1.43212 1.33245 1.09585 1.21104 0.76974 0.78236 0.92496 1.90795 1.44956 1.42640 1.64638 1.21088 1.02181 1.00236 0.90874 1.22247 0.96341 0.83212 0.96986 1.22977 0.89578 0.94041 0.95642 1.46364 1.14929 1.72193 1.03815 1.19851 0.92916 1.32870 0.94991 0.93491 1.26861 0.94943 0.98207 1.06994 1.71011 1.12362 1.55265 1.22702 0.83384 0.75479 0.76620 0.72401 1.19869 1.18229 1.23745 1.23256 0.94027 0.94891 0.91465 0.93674 0.88160 0.92029 0.84819 0.86129 0.83711 0.82445 0.85388 0.74469 0.84246 0.83637 0.86345 0.94084 0.92258 0.94397 0.91343 0.92672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.54 9.34 127.77 1.19 3.73 16 2 N -0.59 -16.98 3.12 -821.39 -2.56 -19.54 16 3 C 0.52 13.43 7.67 87.66 0.67 14.11 16 4 O -0.57 -18.55 15.54 -3.02 -0.05 -18.60 16 5 C -0.10 -1.62 4.37 29.11 0.13 -1.49 16 6 C -0.04 -0.72 4.36 -19.92 -0.09 -0.81 16 7 C -0.13 -1.93 9.71 22.32 0.22 -1.71 16 8 C -0.06 -0.84 10.04 22.18 0.22 -0.62 16 9 C -0.15 -2.22 6.35 -19.70 -0.13 -2.34 16 10 C 0.12 2.15 7.11 38.35 0.27 2.42 16 11 C -0.13 -2.42 9.71 22.47 0.22 -2.20 16 12 N -0.66 -11.36 5.88 -303.20 -1.78 -13.15 16 13 C 0.52 10.10 8.71 87.94 0.77 10.87 16 14 O -0.55 -14.77 18.03 -3.07 -0.06 -14.83 16 15 C -0.11 -1.29 6.88 29.46 0.20 -1.08 16 16 C 0.12 3.81 4.69 45.55 0.21 4.02 16 17 C 0.10 3.82 8.31 83.18 0.69 4.51 16 18 N -0.64 -28.52 2.33 -737.97 -1.72 -30.24 16 19 C -0.28 -15.02 10.64 84.03 0.89 -14.13 16 20 H 0.05 2.80 8.06 -2.91 -0.02 2.77 16 21 C -0.08 -4.34 5.50 84.86 0.47 -3.87 16 22 N -0.97 -59.47 13.70 21.65 0.30 -59.17 16 23 Si 1.09 50.06 25.50 68.60 1.75 51.81 16 24 H -0.27 -11.41 6.97 99.48 0.69 -10.72 16 25 H -0.26 -10.58 5.66 99.48 0.56 -10.02 16 26 H -0.31 -14.77 7.11 99.48 0.71 -14.07 16 27 C 0.09 3.29 4.63 83.27 0.39 3.68 16 28 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.10 1.95 6.44 -2.39 -0.02 1.94 16 30 H 0.06 2.27 5.38 -2.39 -0.01 2.25 16 31 H 0.13 1.56 7.34 -2.39 -0.02 1.55 16 32 H 0.12 1.67 8.04 -2.39 -0.02 1.65 16 33 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 34 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 35 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 36 H 0.42 6.05 8.96 -92.71 -0.83 5.22 16 37 H 0.14 1.27 8.14 -2.39 -0.02 1.26 16 38 H 0.15 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.12 3.60 7.29 -2.39 -0.02 3.59 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.25 15.28 8.73 -92.71 -0.81 14.47 16 43 H 0.07 2.41 7.02 -2.39 -0.02 2.40 16 44 H 0.06 2.07 5.36 -2.39 -0.01 2.06 16 Total: -1.00 -75.68 359.37 2.23 -73.44 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.02 Total: 15.19 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: 6.33 Total: 15.07 kcal Atomic # 7 Polarization: -116.33 SS G_CDS: -5.76 Total: -122.09 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.10 Total: -33.42 kcal Atomic # 14 Polarization: 50.06 SS G_CDS: 1.75 Total: 51.81 kcal Total: -75.68 2.23 -73.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042952981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.959 kcal (2) G-P(sol) polarization free energy of solvation -75.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds