Wall clock time and date at job start Tue Mar 31 2020 05:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30902 * 119.96475 * 2 1 4 4 C 1.34149 * 121.16764 * 179.97438 * 3 2 1 5 5 C 1.38709 * 132.25096 * 179.97438 * 4 3 2 6 6 C 1.38843 * 107.67791 * 180.02562 * 5 4 3 7 7 N 1.31297 * 108.99106 * 0.02562 * 6 5 4 8 8 N 1.37270 * 120.90555 * 359.97438 * 4 3 2 9 9 C 1.36079 * 119.96912 * 359.72155 * 8 4 3 10 10 C 1.50704 * 120.55313 * 180.30230 * 9 8 4 11 11 C 1.38067 * 118.88767 * 0.54874 * 9 8 4 12 12 C 1.47607 * 120.49855 * 179.73005 * 11 9 8 13 13 O 1.21582 * 119.99925 * 269.72408 * 12 11 9 14 14 N 1.34777 * 119.99935 * 89.72531 * 12 11 9 15 15 C 1.46497 * 119.99860 * 359.97438 * 14 12 11 16 16 C 1.46499 * 119.99889 * 179.97438 * 14 12 11 17 17 C 1.53496 * 114.20781 * 119.99815 * 16 14 12 18 18 N 1.47062 * 87.98485 * 87.52018 * 17 16 14 19 19 C 1.36939 * 136.05593 * 207.08750 * 18 17 16 20 20 H 1.08003 * 120.00327 * 7.87536 * 19 18 17 21 21 C 1.38817 * 119.99828 * 187.87353 * 19 18 17 22 22 N 1.31615 * 119.99974 * 195.16153 * 21 19 18 23 23 Si 1.86795 * 120.00115 * 15.16580 * 21 19 18 24 24 H 1.48500 * 109.47169 * 269.99869 * 23 21 19 25 25 H 1.48496 * 109.47363 * 29.99492 * 23 21 19 26 26 H 1.48496 * 109.47282 * 149.99589 * 23 21 19 27 27 C 1.47066 * 87.88897 * 27.34222 * 18 17 16 28 28 H 1.09005 * 109.46952 * 270.02731 * 1 2 3 29 29 H 1.08997 * 109.46976 * 30.02150 * 1 2 3 30 30 H 1.08997 * 109.47192 * 150.02287 * 1 2 3 31 31 H 1.08002 * 126.16196 * 0.02562 * 5 4 3 32 32 H 1.07998 * 125.50520 * 179.97438 * 6 5 4 33 33 H 1.08999 * 109.46951 * 270.24739 * 10 9 8 34 34 H 1.08992 * 109.47068 * 30.24932 * 10 9 8 35 35 H 1.08995 * 109.47010 * 150.25175 * 10 9 8 36 36 H 1.09003 * 109.47063 * 269.99679 * 15 14 12 37 37 H 1.08997 * 109.47434 * 30.00056 * 15 14 12 38 38 H 1.09003 * 109.47218 * 150.00398 * 15 14 12 39 39 H 1.08996 * 113.27978 * 346.92954 * 16 14 12 40 40 H 1.09002 * 113.46562 * 332.74173 * 17 16 14 41 41 H 1.09002 * 113.46360 * 202.29899 * 17 16 14 42 42 H 0.97001 * 120.00280 * 354.91323 * 22 21 19 43 43 H 1.08997 * 113.47168 * 87.43597 * 27 18 17 44 44 H 1.09000 * 113.47164 * 217.88422 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1608 1.1340 0.0000 4 6 3.5020 1.1622 0.0005 5 6 4.4129 2.2083 0.0002 6 6 5.6874 1.6575 0.0005 7 7 5.5872 0.3484 0.0004 8 7 4.2316 -0.0005 0.0016 9 6 3.5944 -1.2029 0.0079 10 6 4.3824 -2.4875 0.0160 11 6 2.2139 -1.2262 0.0015 12 6 1.4864 -2.5105 0.0020 13 8 1.1872 -3.0401 -1.0507 14 7 1.1537 -3.0961 1.1694 15 6 1.5146 -2.4581 2.4379 16 6 0.4311 -4.3704 1.1699 17 6 1.1751 -5.5156 1.8707 18 7 0.5593 -5.0749 3.1314 19 6 0.8805 -5.1394 4.4610 20 1 1.8528 -5.4980 4.7650 21 6 -0.0438 -4.7439 5.4183 22 7 0.3453 -4.5190 6.6553 23 14 -1.8397 -4.5309 4.9507 24 1 -2.0732 -3.1332 4.5067 25 1 -2.1777 -5.4641 3.8462 26 1 -2.6959 -4.8260 6.1275 27 6 -0.5564 -4.5402 2.3363 28 1 -0.3633 0.0005 1.0277 29 1 -0.3633 0.8898 -0.5142 30 1 -0.3633 -0.8902 -0.5135 31 1 4.1738 3.2615 -0.0002 32 1 6.6119 2.2158 -0.0001 33 1 4.5771 -2.8007 -1.0097 34 1 5.3285 -2.3301 0.5336 35 1 3.8113 -3.2607 0.5298 36 1 2.4981 -2.8069 2.7530 37 1 1.5374 -1.3763 2.3070 38 1 0.7769 -2.7167 3.1975 39 1 0.0219 -4.6340 0.1946 40 1 2.2592 -5.4030 1.8545 41 1 0.8487 -6.5052 1.5508 42 1 1.2619 -4.7002 6.9160 43 1 -1.3392 -5.2725 2.1391 44 1 -0.9474 -3.5965 2.7166 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043170170.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:29 Heat of formation + Delta-G solvation = 160.458913 kcal Electronic energy + Delta-G solvation = -29036.944078 eV Core-core repulsion = 25187.508646 eV Total energy + Delta-G solvation = -3849.435432 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.59162 -40.42762 -38.74456 -37.66248 -35.31256 -34.40006 -32.57538 -32.14531 -30.42123 -28.88687 -28.30511 -28.00390 -26.44301 -25.40268 -24.54534 -22.68337 -22.30934 -21.10253 -20.68731 -18.91058 -18.73079 -17.80582 -17.35388 -16.73694 -16.23106 -16.07466 -15.33941 -15.05269 -14.85340 -14.36514 -14.24357 -13.99018 -13.85588 -13.59060 -13.45921 -13.36735 -13.29364 -12.99120 -12.85008 -12.54351 -12.42278 -12.12783 -11.96850 -11.60281 -11.51075 -11.45774 -11.05595 -10.96886 -10.70437 -10.40777 -10.29973 -9.86753 -9.76120 -9.52369 -9.34318 -8.81962 -8.40208 -8.08204 -7.31535 -6.40953 -3.35085 0.25569 0.52443 1.66570 2.35183 2.45440 2.94281 3.15175 3.30057 3.39086 3.52140 3.52750 3.76777 3.88878 4.34602 4.47410 4.62488 4.71856 4.86325 4.90283 4.99907 5.02375 5.11840 5.23270 5.28139 5.34198 5.37603 5.42507 5.51568 5.64987 5.67995 5.69170 5.75481 5.89734 5.92015 6.10693 6.10898 6.14098 6.21593 6.26390 6.29419 6.51404 6.79380 6.97643 7.17543 7.41447 7.47290 8.05757 8.13029 8.85577 9.37944 10.24039 11.08030 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.016322 B = 0.003782 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.040471 B = 7401.943220 C = 7541.941390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.246 3.754 3 N -0.473 5.473 4 C 0.270 3.730 5 C -0.270 4.270 6 C 0.094 3.906 7 N -0.312 5.312 8 N -0.314 5.314 9 C 0.240 3.760 10 C -0.124 4.124 11 C -0.228 4.228 12 C 0.581 3.419 13 O -0.530 6.530 14 N -0.567 5.567 15 C 0.084 3.916 16 C 0.096 3.904 17 C 0.106 3.894 18 N -0.621 5.621 19 C -0.305 4.305 20 H 0.082 0.918 21 C -0.021 4.021 22 N -0.929 5.929 23 Si 1.057 2.943 24 H -0.293 1.293 25 H -0.281 1.281 26 H -0.295 1.295 27 C 0.092 3.908 28 H 0.097 0.903 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.163 0.837 32 H 0.199 0.801 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.058 0.942 37 H 0.050 0.950 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.262 0.738 43 H 0.061 0.939 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.021 9.682 -14.638 18.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.081 3.919 3 N -0.186 5.186 4 C 0.044 3.956 5 C -0.301 4.301 6 C -0.085 4.085 7 N -0.136 5.136 8 N -0.085 5.085 9 C 0.122 3.878 10 C -0.181 4.181 11 C -0.238 4.238 12 C 0.366 3.634 13 O -0.408 6.408 14 N -0.297 5.297 15 C -0.058 4.058 16 C -0.009 4.009 17 C -0.021 4.021 18 N -0.350 5.350 19 C -0.431 4.431 20 H 0.099 0.901 21 C -0.221 4.221 22 N -0.570 5.570 23 Si 0.889 3.111 24 H -0.221 1.221 25 H -0.207 1.207 26 H -0.222 1.222 27 C -0.035 4.035 28 H 0.116 0.884 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.181 0.819 32 H 0.216 0.784 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.116 0.884 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.964 9.709 -14.306 17.738 hybrid contribution 1.567 -0.514 -0.319 1.680 sum 5.531 9.195 -14.625 18.139 Atomic orbital electron populations 1.20949 0.86455 1.05005 1.04764 1.21848 0.97718 0.85714 0.86601 1.67992 1.03878 1.27858 1.18866 1.20813 0.88107 0.86911 0.99776 1.20975 0.89581 0.98675 1.20847 1.23907 0.98977 0.90988 0.94600 1.77856 0.89203 1.15464 1.31036 1.47018 1.07676 1.05529 1.48265 1.20857 0.90623 0.86551 0.89737 1.21104 1.00921 0.90907 1.05182 1.20306 0.91530 0.96855 1.15093 1.17383 0.79153 0.82852 0.84053 1.90804 1.54892 1.64160 1.30897 1.47401 1.54672 1.21730 1.05887 1.21882 1.03214 0.95122 0.85616 1.22637 0.95045 0.83737 0.99486 1.22804 0.97717 0.94868 0.86715 1.46424 1.20696 1.66460 1.01387 1.20107 1.00101 1.44450 0.78466 0.90068 1.25731 1.04272 0.98822 0.93255 1.70902 1.20377 1.47557 1.18181 0.83848 0.76184 0.76265 0.74847 1.22074 1.20733 1.22197 1.23111 0.92702 0.98196 0.89467 0.88450 0.88931 0.89313 0.81937 0.78388 0.88124 0.88610 0.88441 0.92381 0.93110 0.87688 0.87197 0.93460 0.93397 0.92752 0.92207 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 9.82 36.01 0.35 -0.88 16 2 C 0.25 3.31 6.46 -81.73 -0.53 2.79 16 3 N -0.47 -6.78 10.37 -8.17 -0.08 -6.86 16 4 C 0.27 3.87 7.91 -155.32 -1.23 2.64 16 5 C -0.27 -3.15 10.91 -39.18 -0.43 -3.58 16 6 C 0.09 0.99 11.95 -17.56 -0.21 0.78 16 7 N -0.31 -4.16 12.50 30.49 0.38 -3.78 16 8 N -0.31 -4.50 3.88 -7.99 -0.03 -4.53 16 9 C 0.24 3.32 6.93 -80.77 -0.56 2.76 16 10 C -0.12 -1.45 9.71 36.01 0.35 -1.10 16 11 C -0.23 -3.21 3.91 -104.88 -0.41 -3.62 16 12 C 0.58 8.71 4.18 -12.44 -0.05 8.66 16 13 O -0.53 -9.05 16.61 5.29 0.09 -8.96 16 14 N -0.57 -8.76 3.12 -174.76 -0.54 -9.30 16 15 C 0.08 1.36 9.35 59.85 0.56 1.92 16 16 C 0.10 1.54 4.69 -67.68 -0.32 1.23 16 17 C 0.11 1.89 8.31 -8.50 -0.07 1.82 16 18 N -0.62 -13.45 2.33 -184.61 -0.43 -13.88 16 19 C -0.31 -7.93 10.64 -15.06 -0.16 -8.09 16 20 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 21 C -0.02 -0.57 5.50 -17.43 -0.10 -0.67 16 22 N -0.93 -27.55 13.70 55.49 0.76 -26.79 16 23 Si 1.06 24.64 25.50 -169.99 -4.34 20.31 16 24 H -0.29 -6.46 6.97 56.52 0.39 -6.07 16 25 H -0.28 -6.05 5.66 56.52 0.32 -5.73 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 C 0.09 1.70 4.63 -8.36 -0.04 1.67 16 28 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.09 0.97 7.13 -51.93 -0.37 0.60 16 31 H 0.16 1.51 8.06 -52.49 -0.42 1.09 16 32 H 0.20 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 34 H 0.10 1.06 8.12 -51.93 -0.42 0.63 16 35 H 0.10 1.18 7.12 -51.93 -0.37 0.81 16 36 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.74 6.56 -51.93 -0.34 0.40 16 38 H 0.10 2.02 5.38 -51.93 -0.28 1.74 16 39 H 0.11 1.64 7.28 -51.93 -0.38 1.27 16 40 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.26 7.73 8.73 -40.82 -0.36 7.37 16 43 H 0.06 1.09 7.02 -51.93 -0.36 0.72 16 44 H 0.06 1.09 5.36 -51.93 -0.28 0.81 16 LS Contribution 358.39 15.07 5.40 5.40 Total: -1.00 -32.15 358.39 -7.48 -39.63 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -5.85 Total: 2.46 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -2.83 Total: 6.31 kcal Atomic # 7 Polarization: -65.20 SS G_CDS: 0.05 Total: -65.15 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 24.64 SS G_CDS: -4.34 Total: 20.31 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.15 -7.48 -39.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043170170.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.085 kcal (2) G-P(sol) polarization free energy of solvation -32.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 167.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds