Wall clock time and date at job start Tue Mar 31 2020 05:20:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34778 * 119.99742 * 2 1 4 4 O 1.21559 * 119.99630 * 175.47361 * 3 2 1 5 5 C 1.47860 * 120.00174 * 355.47769 * 3 2 1 6 6 C 1.39612 * 119.97022 * 41.63253 * 5 3 2 7 7 C 1.38091 * 119.68532 * 179.97438 * 6 5 3 8 8 C 1.37851 * 120.10780 * 359.97438 * 7 6 5 9 9 C 1.39027 * 121.04227 * 0.02562 * 8 7 6 10 10 C 1.39120 * 119.09172 * 359.75358 * 9 8 7 11 11 N 1.39595 * 110.20618 * 180.02562 * 9 8 7 12 12 C 1.46506 * 123.86992 * 179.97438 * 11 9 8 13 13 C 1.34348 * 112.25145 * 359.97438 * 11 9 8 14 14 O 1.21289 * 126.42249 * 179.97438 * 13 11 9 15 15 C 1.51196 * 132.65116 * 180.02562 * 8 7 6 16 16 C 1.46497 * 120.00098 * 180.02562 * 2 1 3 17 17 C 1.53496 * 114.20647 * 59.99712 * 16 2 1 18 18 N 1.47070 * 87.98381 * 220.14508 * 17 16 2 19 19 C 1.36939 * 136.05902 * 207.07953 * 18 17 16 20 20 H 1.07994 * 119.99698 * 5.87521 * 19 18 17 21 21 C 1.38807 * 119.99889 * 185.87514 * 19 18 17 22 22 N 1.31619 * 120.00169 * 5.75456 * 21 19 18 23 23 Si 1.86801 * 119.99800 * 185.75903 * 21 19 18 24 24 H 1.48505 * 109.47066 * 265.00362 * 23 21 19 25 25 H 1.48502 * 109.47123 * 25.00667 * 23 21 19 26 26 H 1.48499 * 109.47159 * 145.00573 * 23 21 19 27 27 C 1.47068 * 87.88426 * 27.34142 * 18 17 16 28 28 H 1.08997 * 109.46953 * 275.17338 * 1 2 3 29 29 H 1.08999 * 109.47330 * 35.17074 * 1 2 3 30 30 H 1.09001 * 109.46913 * 155.17462 * 1 2 3 31 31 H 1.08001 * 120.15884 * 359.94948 * 6 5 3 32 32 H 1.08000 * 119.94466 * 179.97438 * 7 6 5 33 33 H 1.07993 * 119.99573 * 180.24887 * 10 9 8 34 34 H 1.08998 * 109.47163 * 90.00445 * 12 11 9 35 35 H 1.09002 * 109.46853 * 209.99880 * 12 11 9 36 36 H 1.08994 * 109.47052 * 329.99658 * 12 11 9 37 37 H 1.08995 * 110.50467 * 298.64365 * 15 8 7 38 38 H 1.09000 * 110.50315 * 61.34846 * 15 8 7 39 39 H 1.09000 * 113.28025 * 193.06557 * 16 2 1 40 40 H 1.09001 * 113.46708 * 105.37176 * 17 16 2 41 41 H 1.08988 * 113.46978 * 334.92572 * 17 16 2 42 42 H 0.97000 * 119.99785 * 180.02562 * 22 21 19 43 43 H 1.09004 * 113.46804 * 87.43360 * 27 18 17 44 44 H 1.08999 * 113.46965 * 217.87145 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1689 0.0831 5 6 1.4030 2.4457 -0.1010 6 6 0.2194 2.6278 0.6168 7 6 -0.4628 3.8244 0.5185 8 6 0.0237 4.8339 -0.2843 9 6 1.2005 4.6713 -1.0065 10 6 1.8943 3.4696 -0.9076 11 7 1.4812 5.8271 -1.7374 12 6 2.6528 5.9810 -2.6034 13 6 0.5537 6.7818 -1.5555 14 8 0.5445 7.8830 -2.0638 15 6 -0.4771 6.2259 -0.5964 16 6 2.1975 -1.2687 -0.0006 17 6 1.9059 -2.1632 -1.2134 18 7 1.9170 -3.3161 -0.3002 19 6 2.1885 -4.6542 -0.4048 20 1 2.5688 -5.0571 -1.3317 21 6 1.9748 -5.4926 0.6807 22 7 1.4061 -5.0248 1.7716 23 14 2.4944 -7.2847 0.5931 24 1 1.3370 -8.1158 0.1748 25 1 3.5935 -7.4337 -0.3944 26 1 2.9658 -7.7293 1.9293 27 6 1.5016 -2.4005 0.7732 28 1 -0.3633 0.0927 1.0235 29 1 -0.3634 0.8400 -0.5919 30 1 -0.3633 -0.9327 -0.4315 31 1 -0.1611 1.8363 1.2455 32 1 -1.3790 3.9695 1.0716 33 1 2.8121 3.3291 -1.4591 34 1 2.4057 5.6482 -3.6115 35 1 2.9499 7.0295 -2.6296 36 1 3.4743 5.3802 -2.2134 37 1 -1.4568 6.1815 -1.0721 38 1 -0.5189 6.8289 0.3107 39 1 3.2576 -1.1542 0.2258 40 1 2.7145 -2.1807 -1.9442 41 1 0.9320 -1.9772 -1.6658 42 1 1.2571 -5.6106 2.5303 43 1 0.4210 -2.2769 0.8444 44 1 1.9655 -2.6201 1.7348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043237681.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:57 Heat of formation + Delta-G solvation = 50.961757 kcal Electronic energy + Delta-G solvation = -27384.980434 eV Core-core repulsion = 23498.504098 eV Total energy + Delta-G solvation = -3886.476336 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.89899 -40.20222 -38.62966 -37.69390 -36.15648 -34.60383 -33.37369 -32.06848 -30.69286 -29.05311 -27.58515 -27.13862 -26.74410 -24.67729 -23.99229 -22.85918 -22.29904 -21.08144 -19.81155 -18.74329 -17.83358 -17.24741 -16.92170 -16.74067 -16.38852 -16.23388 -15.37493 -15.23340 -14.87247 -14.68912 -14.37596 -14.13965 -14.08374 -13.85910 -13.53320 -13.44697 -13.09963 -12.81024 -12.70702 -12.52648 -12.36619 -12.00386 -11.80755 -11.60046 -11.45397 -11.33465 -11.01583 -10.80259 -10.71642 -10.53682 -10.26607 -10.16420 -9.72559 -9.51962 -9.20628 -8.86222 -8.30110 -8.21234 -6.98879 -5.87141 -3.18820 0.57821 0.88761 2.02872 2.29699 2.76407 3.09680 3.35512 3.40874 3.43029 3.49509 3.71941 3.93887 4.36537 4.40648 4.43950 4.69284 4.82014 4.90235 4.91968 4.95530 4.98932 5.20513 5.25595 5.26973 5.31077 5.31728 5.37266 5.45314 5.60264 5.65749 5.79553 5.90024 6.01800 6.03127 6.08294 6.13788 6.28993 6.37911 6.50848 6.65541 6.68009 7.07047 7.22855 7.41617 7.48221 7.61594 7.87260 8.27378 8.94693 9.60947 10.52310 11.31615 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.034691 B = 0.002263 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.925725 B =12369.235843 C =12805.342340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.587 5.587 3 C 0.554 3.446 4 O -0.536 6.536 5 C -0.084 4.084 6 C -0.110 4.110 7 C -0.072 4.072 8 C -0.127 4.127 9 C 0.134 3.866 10 C -0.085 4.085 11 N -0.552 5.552 12 C 0.075 3.925 13 C 0.525 3.475 14 O -0.506 6.506 15 C -0.114 4.114 16 C 0.084 3.916 17 C 0.106 3.894 18 N -0.603 5.603 19 C -0.220 4.220 20 H 0.084 0.916 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.279 1.279 26 H -0.289 1.289 27 C 0.156 3.844 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.146 0.854 32 H 0.137 0.863 33 H 0.134 0.866 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.121 0.879 40 H 0.044 0.956 41 H 0.035 0.965 42 H 0.255 0.745 43 H 0.035 0.965 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.778 21.762 -3.802 22.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.318 5.318 3 C 0.342 3.658 4 O -0.414 6.414 5 C -0.088 4.088 6 C -0.129 4.129 7 C -0.090 4.090 8 C -0.130 4.130 9 C 0.038 3.962 10 C -0.106 4.106 11 N -0.274 5.274 12 C -0.066 4.066 13 C 0.315 3.685 14 O -0.381 6.381 15 C -0.153 4.153 16 C -0.020 4.020 17 C -0.022 4.022 18 N -0.329 5.329 19 C -0.347 4.347 20 H 0.102 0.898 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.745 3.255 24 H -0.215 1.215 25 H -0.204 1.204 26 H -0.215 1.215 27 C 0.029 3.971 28 H 0.079 0.921 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.163 0.837 32 H 0.155 0.845 33 H 0.152 0.848 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.139 0.861 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.016 22.062 -4.031 22.982 hybrid contribution 0.119 -1.090 -0.085 1.100 sum -4.897 20.972 -4.116 21.926 Atomic orbital electron populations 1.22122 0.79778 1.03732 1.01659 1.47814 1.07019 1.05831 1.71173 1.18263 0.87062 0.83405 0.77094 1.90788 1.13521 1.87155 1.49933 1.19680 0.95843 0.94381 0.98911 1.21588 0.93802 0.97959 0.99590 1.20215 1.00052 0.91289 0.97431 1.19970 0.96263 0.96297 1.00492 1.17965 0.95766 0.87852 0.94602 1.20274 1.00023 0.89877 1.00475 1.45731 1.24776 1.13387 1.43546 1.21880 0.86726 1.04005 0.93992 1.20637 0.82582 0.83688 0.81614 1.90790 1.75941 1.19281 1.52081 1.21098 0.99905 0.93539 1.00757 1.23877 0.98026 0.79682 1.00371 1.22823 0.98251 0.87303 0.93778 1.45336 1.78764 1.03150 1.05601 1.18917 1.36811 0.80231 0.98712 0.89836 1.24845 1.00493 0.98350 0.96591 1.69839 1.46701 1.35141 1.04797 0.86058 0.78188 0.84163 0.77085 1.21533 1.20407 1.21494 1.22423 0.96265 0.83864 0.94570 0.92075 0.91050 0.89941 0.83694 0.84546 0.84788 0.91326 0.89733 0.89914 0.85658 0.85681 0.86123 0.93774 0.94801 0.93486 0.94688 0.91544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 7.72 59.85 0.46 1.27 16 2 N -0.59 -8.94 3.11 -174.67 -0.54 -9.49 16 3 C 0.55 8.51 7.32 -12.32 -0.09 8.42 16 4 O -0.54 -10.19 16.44 5.31 0.09 -10.10 16 5 C -0.08 -0.98 5.14 -105.05 -0.54 -1.53 16 6 C -0.11 -0.98 7.63 -39.12 -0.30 -1.28 16 7 C -0.07 -0.51 10.02 -39.78 -0.40 -0.91 16 8 C -0.13 -1.02 6.35 -104.23 -0.66 -1.68 16 9 C 0.13 1.29 6.69 -83.70 -0.56 0.73 16 10 C -0.08 -0.92 9.32 -38.86 -0.36 -1.28 16 11 N -0.55 -5.19 3.13 -120.65 -0.38 -5.57 16 12 C 0.08 0.56 10.76 59.85 0.64 1.20 16 13 C 0.53 5.22 8.23 -10.85 -0.09 5.13 16 14 O -0.51 -6.57 17.67 5.55 0.10 -6.47 16 15 C -0.11 -0.75 6.88 -28.46 -0.20 -0.95 16 16 C 0.08 1.60 4.59 -67.68 -0.31 1.29 16 17 C 0.11 2.14 8.23 -8.50 -0.07 2.07 16 18 N -0.60 -15.17 3.77 -184.62 -0.70 -15.86 16 19 C -0.22 -6.06 10.74 -15.06 -0.16 -6.22 16 20 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 21 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 22 N -0.92 -26.68 11.77 55.49 0.65 -26.03 16 23 Si 0.92 21.73 29.56 -169.99 -5.02 16.71 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.16 3.49 6.65 -8.37 -0.06 3.44 16 28 H 0.06 0.61 6.85 -51.93 -0.36 0.26 16 29 H 0.07 0.66 6.00 -51.93 -0.31 0.35 16 30 H 0.08 1.06 5.97 -51.93 -0.31 0.75 16 31 H 0.15 1.14 5.53 -52.49 -0.29 0.85 16 32 H 0.14 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.13 1.45 7.68 -52.49 -0.40 1.04 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.61 7.95 -51.93 -0.41 0.20 16 36 H 0.08 0.53 7.59 -51.93 -0.39 0.13 16 37 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.13 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.12 2.51 7.26 -51.93 -0.38 2.13 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 41 H 0.03 0.65 7.04 -51.94 -0.37 0.28 16 42 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.04 0.77 6.45 -51.93 -0.33 0.43 16 44 H 0.07 1.68 7.53 -51.93 -0.39 1.29 16 LS Contribution 361.14 15.07 5.44 5.44 Total: -1.00 -34.76 361.14 -8.75 -43.52 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -5.61 Total: -1.59 kcal Atomic # 6 Polarization: 12.24 SS G_CDS: -2.78 Total: 9.45 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.96 Total: -56.95 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.19 Total: -16.57 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.76 -8.75 -43.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043237681.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.477 kcal (2) G-P(sol) polarization free energy of solvation -34.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.516 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds