Wall clock time and date at job start Tue Mar 31 2020 05:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34770 * 119.99832 * 2 1 4 4 O 1.21586 * 119.99835 * 175.46790 * 3 2 1 5 5 C 1.47603 * 120.00184 * 355.46968 * 3 2 1 6 6 C 1.39777 * 120.08013 * 41.60679 * 5 3 2 7 7 C 1.37630 * 119.93869 * 179.97438 * 6 5 3 8 8 C 1.39170 * 120.09793 * 0.02562 * 7 6 5 9 9 C 1.39152 * 120.08836 * 0.02562 * 8 7 6 10 10 C 1.37660 * 120.11326 * 359.73195 * 9 8 7 11 11 C 1.50663 * 119.82688 * 179.97438 * 9 8 7 12 12 C 1.52913 * 109.50231 * 326.10270 * 11 9 8 13 13 C 1.50499 * 109.86924 * 48.51316 * 12 11 9 14 14 O 1.21281 * 119.59840 * 144.83496 * 13 12 11 15 15 N 1.34522 * 120.80446 * 324.81940 * 13 12 11 16 16 C 1.46499 * 120.00049 * 179.97438 * 2 1 3 17 17 C 1.53504 * 114.20397 * 60.00483 * 16 2 1 18 18 N 1.47061 * 87.98330 * 220.14664 * 17 16 2 19 19 C 1.36941 * 136.05348 * 207.08817 * 18 17 16 20 20 H 1.07995 * 120.00390 * 5.86261 * 19 18 17 21 21 C 1.38812 * 119.99994 * 185.86895 * 19 18 17 22 22 N 1.31623 * 119.99792 * 5.74811 * 21 19 18 23 23 Si 1.86792 * 120.00178 * 185.75297 * 21 19 18 24 24 H 1.48501 * 109.47219 * 265.00387 * 23 21 19 25 25 H 1.48503 * 109.47434 * 25.00221 * 23 21 19 26 26 H 1.48507 * 109.47394 * 145.00478 * 23 21 19 27 27 C 1.47062 * 87.88947 * 27.34306 * 18 17 16 28 28 H 1.09002 * 109.47497 * 275.17915 * 1 2 3 29 29 H 1.08996 * 109.47225 * 35.18653 * 1 2 3 30 30 H 1.09005 * 109.46520 * 155.18141 * 1 2 3 31 31 H 1.07996 * 120.02797 * 359.97438 * 6 5 3 32 32 H 1.08004 * 119.95168 * 180.02562 * 7 6 5 33 33 H 1.07999 * 120.04066 * 180.27444 * 10 9 8 34 34 H 1.08999 * 109.47680 * 206.09114 * 11 9 8 35 35 H 1.08998 * 109.45408 * 86.10236 * 11 9 8 36 36 H 1.09001 * 109.40545 * 288.39904 * 12 11 9 37 37 H 1.08997 * 109.40578 * 168.63808 * 12 11 9 38 38 H 0.96997 * 119.72542 * 180.74900 * 15 13 12 39 39 H 1.08995 * 113.28343 * 193.06817 * 16 2 1 40 40 H 1.09003 * 113.46654 * 105.36140 * 17 16 2 41 41 H 1.09004 * 113.46709 * 334.92824 * 17 16 2 42 42 H 0.97005 * 119.99955 * 180.02562 * 22 21 19 43 43 H 1.08996 * 113.46626 * 87.43617 * 27 18 17 44 44 H 1.08996 * 113.46786 * 217.87968 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3519 1.1688 0.0832 5 6 1.4043 2.4434 -0.1010 6 6 0.2187 2.6280 0.6160 7 6 -0.4635 3.8195 0.5201 8 6 0.0250 4.8402 -0.2899 9 6 1.2044 4.6589 -1.0057 10 6 1.8945 3.4715 -0.9105 11 6 1.7276 5.7677 -1.8813 12 6 0.5532 6.5370 -2.4873 13 6 -0.4393 6.8862 -1.4112 14 8 -1.0412 7.9375 -1.4697 15 7 -0.6671 6.0464 -0.3853 16 6 2.1976 -1.2687 0.0006 17 6 1.9061 -2.1643 -1.2116 18 7 1.9169 -3.3163 -0.2976 19 6 2.1886 -4.6545 -0.4011 20 1 2.5690 -5.0582 -1.3277 21 6 1.9748 -5.4921 0.6850 22 7 1.4061 -5.0235 1.7755 23 14 2.4944 -7.2843 0.5988 24 1 1.3370 -8.1157 0.1811 25 1 3.5935 -7.4342 -0.3886 26 1 2.9658 -7.7279 1.9354 27 6 1.5015 -2.4000 0.7751 28 1 -0.3634 0.0928 1.0235 29 1 -0.3633 0.8399 -0.5922 30 1 -0.3632 -0.9328 -0.4314 31 1 -0.1615 1.8365 1.2446 32 1 -1.3794 3.9625 1.0744 33 1 2.8121 3.3337 -1.4630 34 1 2.3351 5.3435 -2.6808 35 1 2.3363 6.4459 -1.2834 36 1 0.0665 5.9192 -3.2420 37 1 0.9207 7.4520 -2.9518 38 1 -1.3182 6.2823 0.2939 39 1 3.2576 -1.1541 0.2269 40 1 2.7146 -2.1822 -1.9424 41 1 0.9321 -1.9785 -1.6644 42 1 1.2570 -5.6088 2.5347 43 1 0.4209 -2.2764 0.8460 44 1 1.9654 -2.6189 1.7368 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043283800.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:21 Heat of formation + Delta-G solvation = 25.623350 kcal Electronic energy + Delta-G solvation = -27334.520851 eV Core-core repulsion = 23446.945759 eV Total energy + Delta-G solvation = -3887.575092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.44644 -40.16645 -38.81024 -37.68318 -35.60754 -34.65881 -34.28492 -32.09664 -30.55750 -30.05051 -27.73469 -26.87406 -25.03801 -24.66588 -24.51459 -23.16707 -22.73313 -20.60682 -19.43365 -18.77439 -18.26817 -17.48858 -17.07978 -16.77771 -16.47951 -16.01833 -15.48750 -15.20844 -14.86570 -14.66054 -14.54235 -14.15434 -14.04528 -13.86087 -13.69521 -13.27729 -13.05099 -12.85489 -12.49756 -12.33601 -12.13289 -11.91803 -11.78795 -11.57800 -11.37583 -11.31490 -11.02017 -10.94065 -10.79600 -10.46174 -10.25218 -10.15668 -9.66163 -9.51037 -9.22281 -8.85466 -8.41389 -8.16784 -6.98101 -5.86526 -3.18173 0.54707 0.96782 2.02865 2.57981 2.79925 3.13551 3.35877 3.41183 3.43351 3.51280 3.90474 4.19166 4.26487 4.40340 4.45110 4.55668 4.68515 4.83078 4.91851 5.03138 5.21627 5.26451 5.28674 5.32549 5.33563 5.45594 5.48269 5.56041 5.68578 5.70163 5.79289 5.81683 6.02216 6.05429 6.15077 6.22162 6.38701 6.39413 6.52310 6.69336 6.72348 7.07933 7.24861 7.42495 7.51844 7.65649 7.87900 8.33186 8.95270 9.61561 10.53160 11.32230 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.036644 B = 0.002203 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 763.917100 B =12709.177438 C =13008.578867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.589 5.589 3 C 0.556 3.444 4 O -0.539 6.539 5 C -0.140 4.140 6 C -0.060 4.060 7 C -0.157 4.157 8 C 0.174 3.826 9 C -0.132 4.132 10 C -0.030 4.030 11 C -0.076 4.076 12 C -0.139 4.139 13 C 0.522 3.478 14 O -0.529 6.529 15 N -0.661 5.661 16 C 0.084 3.916 17 C 0.106 3.894 18 N -0.603 5.603 19 C -0.219 4.219 20 H 0.084 0.916 21 C -0.006 4.006 22 N -0.919 5.919 23 Si 0.915 3.085 24 H -0.288 1.288 25 H -0.279 1.279 26 H -0.289 1.289 27 C 0.155 3.845 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.143 0.857 32 H 0.134 0.866 33 H 0.139 0.861 34 H 0.095 0.905 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.110 0.890 38 H 0.412 0.588 39 H 0.121 0.879 40 H 0.044 0.956 41 H 0.034 0.966 42 H 0.255 0.745 43 H 0.035 0.965 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.828 22.172 -5.174 23.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.321 5.321 3 C 0.344 3.656 4 O -0.417 6.417 5 C -0.144 4.144 6 C -0.079 4.079 7 C -0.178 4.178 8 C 0.077 3.923 9 C -0.135 4.135 10 C -0.049 4.049 11 C -0.113 4.113 12 C -0.178 4.178 13 C 0.311 3.689 14 O -0.404 6.404 15 N -0.305 5.305 16 C -0.019 4.019 17 C -0.021 4.021 18 N -0.329 5.329 19 C -0.346 4.346 20 H 0.102 0.898 21 C -0.203 4.203 22 N -0.565 5.565 23 Si 0.745 3.255 24 H -0.215 1.215 25 H -0.204 1.204 26 H -0.215 1.215 27 C 0.028 3.972 28 H 0.077 0.923 29 H 0.088 0.912 30 H 0.100 0.900 31 H 0.161 0.839 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.113 0.887 35 H 0.103 0.897 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.250 0.750 39 H 0.139 0.861 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.052 0.948 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.378 22.387 -5.229 23.403 hybrid contribution -0.425 -1.067 0.436 1.228 sum -4.802 21.320 -4.793 22.374 Atomic orbital electron populations 1.22091 0.79966 1.03648 1.01480 1.47819 1.06890 1.05934 1.71415 1.18241 0.87080 0.83426 0.76865 1.90786 1.13590 1.87240 1.50098 1.19954 0.97025 0.95520 1.01886 1.21470 0.92620 0.96946 0.96882 1.20708 1.01823 0.92636 1.02601 1.17773 0.91570 0.85810 0.97119 1.19387 0.94864 0.97002 1.02268 1.20856 0.98180 0.90132 0.95769 1.20431 0.96980 0.95146 0.98783 1.21717 0.95527 1.03619 0.96976 1.20826 0.82840 0.82777 0.82463 1.90788 1.49893 1.23500 1.76267 1.43554 1.41802 1.18380 1.26794 1.23853 0.98016 0.79771 1.00288 1.22824 0.98216 0.87311 0.93793 1.45336 1.78757 1.03165 1.05621 1.18920 1.36768 0.80250 0.98699 0.89834 1.24850 1.00514 0.98357 0.96598 1.69844 1.46725 1.35141 1.04791 0.86055 0.78184 0.84162 0.77082 1.21546 1.20398 1.21502 1.22420 0.96228 0.83928 0.94574 0.92261 0.91168 0.89978 0.83908 0.84783 0.84369 0.88660 0.89717 0.87621 0.87167 0.75015 0.86141 0.93775 0.94847 0.93502 0.94755 0.91584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.84 7.72 59.85 0.46 1.30 16 2 N -0.59 -9.05 3.11 -174.75 -0.54 -9.59 16 3 C 0.56 8.54 7.31 -12.44 -0.09 8.45 16 4 O -0.54 -10.26 16.45 5.29 0.09 -10.17 16 5 C -0.14 -1.60 5.15 -104.94 -0.54 -2.14 16 6 C -0.06 -0.54 7.61 -39.23 -0.30 -0.84 16 7 C -0.16 -1.16 9.89 -39.46 -0.39 -1.55 16 8 C 0.17 1.37 6.51 -83.74 -0.55 0.82 16 9 C -0.13 -1.08 5.65 -104.51 -0.59 -1.67 16 10 C -0.03 -0.30 9.28 -39.23 -0.36 -0.66 16 11 C -0.08 -0.44 5.99 -27.95 -0.17 -0.61 16 12 C -0.14 -0.82 6.08 -28.02 -0.17 -0.99 16 13 C 0.52 4.56 7.72 -11.20 -0.09 4.48 16 14 O -0.53 -6.51 17.91 5.56 0.10 -6.41 16 15 N -0.66 -4.88 5.34 -9.98 -0.05 -4.93 16 16 C 0.08 1.62 4.59 -67.67 -0.31 1.31 16 17 C 0.11 2.15 8.23 -8.50 -0.07 2.08 16 18 N -0.60 -15.25 3.77 -184.62 -0.70 -15.94 16 19 C -0.22 -6.07 10.74 -15.06 -0.16 -6.23 16 20 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 21 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 22 N -0.92 -26.80 11.77 55.49 0.65 -26.14 16 23 Si 0.92 21.79 29.56 -169.99 -5.02 16.76 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.16 3.51 6.65 -8.37 -0.06 3.46 16 28 H 0.06 0.61 6.85 -51.93 -0.36 0.26 16 29 H 0.07 0.66 6.00 -51.93 -0.31 0.35 16 30 H 0.08 1.07 5.97 -51.93 -0.31 0.76 16 31 H 0.14 1.16 5.52 -52.49 -0.29 0.87 16 32 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 33 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 34 H 0.09 0.42 8.06 -51.93 -0.42 0.00 16 35 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.11 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.41 2.43 8.82 -40.82 -0.36 2.07 16 39 H 0.12 2.53 7.26 -51.93 -0.38 2.15 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.64 7.04 -51.93 -0.37 0.28 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.03 0.76 6.45 -51.93 -0.33 0.43 16 44 H 0.07 1.68 7.53 -51.93 -0.39 1.29 16 LS Contribution 358.15 15.07 5.40 5.40 Total: -1.00 -34.97 358.15 -9.15 -44.12 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.60 Total: -0.02 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -3.48 Total: 6.94 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.64 Total: -56.61 kcal Atomic # 8 Polarization: -16.77 SS G_CDS: 0.19 Total: -16.58 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -34.97 -9.15 -44.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043283800.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.745 kcal (2) G-P(sol) polarization free energy of solvation -34.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds