Wall clock time and date at job start Tue Mar 31 2020 05:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38808 * 120.17795 * 2 1 4 4 N 1.31509 * 121.58654 * 180.02562 * 3 2 1 5 5 C 1.32762 * 121.47152 * 359.97438 * 4 3 2 6 6 C 1.40906 * 119.85877 * 359.97438 * 5 4 3 7 7 C 1.45858 * 106.45666 * 179.97438 * 6 5 4 8 8 N 1.30240 * 107.65808 * 359.74298 * 7 6 5 9 9 N 1.36823 * 133.57272 * 179.97438 * 5 4 3 10 10 C 1.46501 * 125.38726 * 359.97438 * 9 5 4 11 11 C 1.50703 * 109.47424 * 90.00626 * 10 9 5 12 12 O 1.21287 * 119.99478 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00261 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99894 * 359.97438 * 13 11 10 15 15 C 1.46500 * 119.99905 * 179.97438 * 13 11 10 16 16 C 1.53495 * 114.20946 * 239.99851 * 15 13 11 17 17 N 1.47064 * 87.98647 * 220.14789 * 16 15 13 18 18 C 1.36929 * 136.05710 * 207.07951 * 17 16 15 19 19 H 1.08004 * 120.00104 * 6.50631 * 18 17 16 20 20 C 1.38818 * 120.00175 * 186.49548 * 18 17 16 21 21 N 1.31615 * 119.99847 * 6.43003 * 20 18 17 22 22 Si 1.86802 * 119.99925 * 186.42380 * 20 18 17 23 23 H 1.48502 * 109.46990 * 265.01960 * 22 20 18 24 24 H 1.48491 * 109.47236 * 25.02406 * 22 20 18 25 25 H 1.48506 * 109.46777 * 145.02360 * 22 20 18 26 26 C 1.47067 * 87.88549 * 27.33957 * 17 16 15 27 27 C 1.37020 * 120.17673 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47494 * 89.99885 * 1 2 3 29 29 H 1.09005 * 109.47189 * 210.00517 * 1 2 3 30 30 H 1.08997 * 109.46863 * 330.00125 * 1 2 3 31 31 H 1.07999 * 119.20169 * 0.02562 * 3 2 1 32 32 H 1.08004 * 126.16686 * 179.97438 * 7 6 5 33 33 H 1.08998 * 109.47567 * 330.00176 * 10 9 5 34 34 H 1.09009 * 109.47330 * 210.00275 * 10 9 5 35 35 H 1.09001 * 109.46983 * 270.00218 * 14 13 11 36 36 H 1.08991 * 109.47247 * 30.00032 * 14 13 11 37 37 H 1.09001 * 109.46779 * 150.00246 * 14 13 11 38 38 H 1.09008 * 113.28018 * 13.06715 * 15 13 11 39 39 H 1.08996 * 113.46596 * 105.36686 * 16 15 13 40 40 H 1.09007 * 113.51449 * 334.93936 * 16 15 13 41 41 H 0.97003 * 120.00226 * 179.97438 * 21 20 18 42 42 H 1.09005 * 113.46771 * 87.43754 * 26 17 16 43 43 H 1.09002 * 113.46911 * 217.87594 * 26 17 16 44 44 H 1.08009 * 120.92040 * 0.02562 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2048 1.2000 0.0000 4 7 3.5195 1.2323 -0.0005 5 6 4.2402 0.1173 -0.0005 6 6 3.5948 -1.1352 0.0005 7 6 4.6490 -2.1432 -0.0004 8 7 5.7922 -1.5193 -0.0074 9 7 5.5847 -0.1365 -0.0014 10 6 6.6399 0.8797 -0.0032 11 6 7.0031 1.2294 1.4170 12 8 6.4359 0.6837 2.3398 13 7 7.9574 2.1491 1.6616 14 6 8.6421 2.8085 0.5469 15 6 8.3100 2.4893 3.0422 16 6 8.0953 3.9663 3.4010 17 7 9.3554 3.9120 4.1573 18 6 9.8894 4.5713 5.2321 19 1 9.2863 5.2729 5.7893 20 6 11.2058 4.3378 5.6057 21 7 11.9786 3.5817 4.8551 22 14 11.8804 5.0970 7.1734 23 1 12.5705 6.3714 6.8492 24 1 10.7633 5.3645 8.1145 25 1 12.8441 4.1586 7.8029 26 6 9.7923 2.8426 3.2472 27 6 2.1958 -1.1845 -0.0005 28 1 -0.3634 0.0000 -1.0276 29 1 -0.3634 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6547 2.1293 0.0004 32 1 4.5071 -3.2139 0.0004 33 1 6.2840 1.7723 -0.5175 34 1 7.5186 0.4902 -0.5175 35 1 9.5250 2.2320 0.2707 36 1 7.9679 2.8720 -0.3071 37 1 8.9429 3.8120 0.8479 38 1 7.9089 1.7886 3.7746 39 1 7.2201 4.1379 4.0275 40 1 8.1343 4.6332 2.5396 41 1 12.8986 3.4188 5.1159 42 1 10.2791 3.2126 2.3447 43 1 10.3629 2.0571 3.7426 44 1 1.6737 -2.1301 -0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043366893.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:40:14 Heat of formation + Delta-G solvation = 143.019724 kcal Electronic energy + Delta-G solvation = -27359.862599 eV Core-core repulsion = 23509.670947 eV Total energy + Delta-G solvation = -3850.191652 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.75131 -39.89862 -38.53197 -37.70407 -34.59423 -34.21225 -32.94703 -32.01925 -30.85277 -28.65553 -27.56957 -26.76686 -26.33228 -24.64405 -24.24708 -23.36897 -21.95879 -21.34894 -19.92567 -18.62944 -17.86937 -17.33414 -17.07700 -16.74413 -16.22874 -15.85386 -15.51402 -15.19840 -14.77352 -14.43347 -14.16740 -13.92190 -13.84341 -13.46028 -13.35532 -13.22321 -12.87855 -12.52830 -12.51317 -12.37196 -12.25656 -12.11500 -11.93152 -11.55415 -11.30427 -11.13428 -10.99273 -10.78474 -10.72012 -10.23505 -10.14202 -9.68985 -9.63804 -9.48983 -9.12658 -8.83310 -8.31372 -8.18019 -6.95986 -5.84630 -3.16081 0.60418 1.08137 1.88255 2.31087 2.71255 3.18624 3.37409 3.42491 3.44897 3.57537 3.97694 4.09667 4.40630 4.42177 4.51710 4.52762 4.68961 4.85467 4.92875 4.99685 5.14405 5.22062 5.27990 5.29096 5.34198 5.36156 5.45091 5.47484 5.62520 5.67712 5.80648 5.98502 6.02715 6.06609 6.09049 6.33320 6.42062 6.54291 6.59836 6.71538 7.09384 7.25914 7.28842 7.43873 7.64024 7.74895 7.89742 8.31973 8.97171 9.63435 10.55585 11.34239 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023212 B = 0.002390 C = 0.002298 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1205.996367 B =11713.564976 C =12180.244556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.188 4.188 3 C 0.171 3.829 4 N -0.497 5.497 5 C 0.321 3.679 6 C -0.224 4.224 7 C 0.081 3.919 8 N -0.225 5.225 9 N -0.374 5.374 10 C 0.125 3.875 11 C 0.497 3.503 12 O -0.530 6.530 13 N -0.593 5.593 14 C 0.072 3.928 15 C 0.086 3.914 16 C 0.106 3.894 17 N -0.603 5.603 18 C -0.219 4.219 19 H 0.084 0.916 20 C -0.006 4.006 21 N -0.919 5.919 22 Si 0.915 3.085 23 H -0.288 1.288 24 H -0.279 1.279 25 H -0.289 1.289 26 C 0.157 3.843 27 C 0.004 3.996 28 H 0.069 0.931 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.163 0.837 32 H 0.201 0.799 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.118 0.882 39 H 0.043 0.957 40 H 0.035 0.965 41 H 0.255 0.745 42 H 0.036 0.964 43 H 0.064 0.936 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.905 -9.125 -16.839 27.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.192 4.192 3 C 0.002 3.998 4 N -0.210 5.210 5 C 0.083 3.917 6 C -0.234 4.234 7 C -0.118 4.118 8 N -0.036 5.036 9 N -0.164 5.164 10 C 0.000 4.000 11 C 0.282 3.718 12 O -0.406 6.406 13 N -0.327 5.327 14 C -0.071 4.071 15 C -0.017 4.017 16 C -0.021 4.021 17 N -0.328 5.328 18 C -0.346 4.346 19 H 0.101 0.899 20 C -0.203 4.203 21 N -0.565 5.565 22 Si 0.745 3.255 23 H -0.215 1.215 24 H -0.204 1.204 25 H -0.215 1.215 26 C 0.030 3.970 27 C -0.025 4.025 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.181 0.819 32 H 0.218 0.782 33 H 0.141 0.859 34 H 0.141 0.859 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.061 0.939 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.053 0.947 43 H 0.083 0.917 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.960 -8.549 -16.082 25.579 hybrid contribution -0.511 -0.042 0.756 0.913 sum -18.471 -8.592 -15.326 25.493 Atomic orbital electron populations 1.20606 0.89794 1.03067 1.02298 1.20381 0.97684 0.93777 1.07323 1.22634 0.87781 0.97830 0.91563 1.66736 1.07754 1.28853 1.17668 1.18903 0.85959 0.90515 0.96323 1.20477 0.95001 0.93912 1.13977 1.25019 0.87728 0.99733 0.99291 1.76741 1.23497 0.86476 1.16919 1.47595 1.01752 1.03307 1.63724 1.21545 0.91205 0.90658 0.96595 1.20722 0.80194 0.79883 0.91016 1.90725 1.52105 1.52074 1.45650 1.47883 1.37164 1.39594 1.08014 1.21882 0.97232 0.99586 0.88414 1.23814 0.99945 0.97169 0.80812 1.22811 0.91436 0.93408 0.94454 1.45336 1.15078 1.41580 1.30842 1.18923 0.94485 1.19654 1.01587 0.89851 1.24856 0.95735 1.00426 0.99308 1.69845 1.06889 1.41814 1.37927 0.86053 0.78691 0.78245 0.82493 1.21514 1.20407 1.21495 1.22398 0.90381 0.91478 0.92758 1.20608 0.90809 0.98572 0.92491 0.91276 0.91497 0.91273 0.81949 0.78216 0.85903 0.85923 0.91961 0.91689 0.89801 0.86463 0.93860 0.94795 0.93501 0.94653 0.91744 0.84385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.02 36.01 0.36 -0.14 16 2 C -0.19 -1.59 5.86 -104.85 -0.61 -2.20 16 3 C 0.17 1.75 10.82 -17.48 -0.19 1.56 16 4 N -0.50 -6.84 10.40 -12.34 -0.13 -6.96 16 5 C 0.32 4.64 7.97 -156.12 -1.24 3.40 16 6 C -0.22 -2.68 6.38 -105.18 -0.67 -3.35 16 7 C 0.08 0.89 12.29 -15.18 -0.19 0.71 16 8 N -0.22 -3.16 12.40 31.85 0.39 -2.77 16 9 N -0.37 -5.50 3.13 -61.60 -0.19 -5.69 16 10 C 0.13 1.62 5.44 -5.19 -0.03 1.59 16 11 C 0.50 8.46 7.74 -10.99 -0.09 8.38 16 12 O -0.53 -11.41 15.94 5.55 0.09 -11.32 16 13 N -0.59 -9.81 3.11 -173.56 -0.54 -10.35 16 14 C 0.07 0.89 8.92 59.84 0.53 1.42 16 15 C 0.09 1.77 4.57 -67.68 -0.31 1.46 16 16 C 0.11 2.29 8.24 -8.51 -0.07 2.22 16 17 N -0.60 -15.81 3.76 -184.62 -0.69 -16.51 16 18 C -0.22 -6.24 10.73 -15.06 -0.16 -6.41 16 19 H 0.08 2.29 7.84 -52.48 -0.41 1.87 16 20 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 21 N -0.92 -27.41 11.81 55.49 0.66 -26.75 16 22 Si 0.92 22.28 29.56 -169.99 -5.02 17.25 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 C 0.16 3.70 6.65 -8.37 -0.06 3.65 16 27 C 0.00 0.03 9.83 -39.37 -0.39 -0.36 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 30 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 31 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.20 1.26 8.06 -52.48 -0.42 0.83 16 33 H 0.12 1.31 7.40 -51.93 -0.38 0.93 16 34 H 0.12 1.26 8.11 -51.92 -0.42 0.84 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.57 6.44 -51.93 -0.33 0.23 16 37 H 0.08 1.12 6.18 -51.93 -0.32 0.80 16 38 H 0.12 2.67 7.29 -51.92 -0.38 2.29 16 39 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 40 H 0.03 0.69 6.97 -51.93 -0.36 0.33 16 41 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.04 0.81 6.57 -51.93 -0.34 0.47 16 43 H 0.06 1.70 7.57 -51.93 -0.39 1.31 16 44 H 0.14 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 369.84 15.07 5.57 5.57 Total: -1.00 -38.00 369.84 -8.93 -46.93 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -5.86 Total: -1.06 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -3.20 Total: 11.66 kcal Atomic # 7 Polarization: -68.52 SS G_CDS: -0.51 Total: -69.03 kcal Atomic # 8 Polarization: -11.41 SS G_CDS: 0.09 Total: -11.32 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -38.00 -8.93 -46.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043366893.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.950 kcal (2) G-P(sol) polarization free energy of solvation -37.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 143.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds