Wall clock time and date at job start Tue Mar 31 2020 05:39:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30237 * 126.16911 * 2 1 4 4 N 1.39839 * 110.09040 * 179.97438 * 3 2 1 5 5 C 1.46495 * 125.38736 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47295 * 90.02572 * 5 4 3 7 7 O 1.21283 * 119.99918 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99890 * 179.97438 * 6 5 4 9 9 C 1.46498 * 120.00485 * 359.97438 * 8 6 5 10 10 C 1.46508 * 119.99979 * 179.97438 * 8 6 5 11 11 C 1.53496 * 114.20706 * 239.99886 * 10 8 6 12 12 N 1.47062 * 87.98485 * 220.14769 * 11 10 8 13 13 C 1.36939 * 136.05593 * 207.08750 * 12 11 10 14 14 H 1.08008 * 119.99868 * 7.82597 * 13 12 11 15 15 C 1.38808 * 120.00203 * 187.82575 * 13 12 11 16 16 N 1.31618 * 119.99998 * 195.17052 * 15 13 12 17 17 Si 1.86797 * 119.99840 * 15.16580 * 15 13 12 18 18 H 1.48503 * 109.47450 * 270.00422 * 17 15 13 19 19 H 1.48503 * 109.47360 * 30.00092 * 17 15 13 20 20 H 1.48498 * 109.47360 * 150.00270 * 17 15 13 21 21 C 1.47059 * 87.88616 * 27.34176 * 12 11 10 22 22 C 1.36827 * 109.22454 * 0.23175 * 4 3 2 23 23 N 1.32764 * 133.57490 * 180.43856 * 22 4 3 24 24 C 1.31511 * 121.47090 * 179.66517 * 23 22 4 25 25 C 1.38803 * 121.58661 * 359.70072 * 24 23 22 26 26 C 1.37015 * 119.65391 * 0.02562 * 25 24 23 27 27 C 1.39997 * 118.15126 * 0.02562 * 26 25 24 28 28 H 1.08992 * 109.47358 * 90.01646 * 1 2 3 29 29 H 1.08995 * 109.46688 * 210.02292 * 1 2 3 30 30 H 1.08997 * 109.46874 * 330.01444 * 1 2 3 31 31 H 1.09000 * 109.47534 * 330.02101 * 5 4 3 32 32 H 1.09000 * 109.46997 * 210.02561 * 5 4 3 33 33 H 1.08994 * 109.47345 * 270.00261 * 9 8 6 34 34 H 1.09001 * 109.46733 * 30.00327 * 9 8 6 35 35 H 1.08996 * 109.47534 * 149.99922 * 9 8 6 36 36 H 1.09001 * 113.27729 * 13.06740 * 10 8 6 37 37 H 1.09008 * 113.46447 * 105.36204 * 11 10 8 38 38 H 1.08996 * 113.51824 * 334.94014 * 11 10 8 39 39 H 0.96995 * 120.00365 * 354.90363 * 16 15 13 40 40 H 1.08997 * 113.47135 * 87.43718 * 21 12 11 41 41 H 1.09007 * 113.47198 * 217.88025 * 21 12 11 42 42 H 1.07996 * 119.20412 * 179.71311 * 24 23 22 43 43 H 1.08001 * 120.17567 * 179.97438 * 25 24 23 44 44 H 1.07996 * 120.93053 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2757 1.0514 0.0000 4 7 3.6194 0.6641 0.0006 5 6 4.7653 1.5767 0.0002 6 6 5.1583 1.8902 1.4209 7 8 4.5416 1.3999 2.3430 8 7 6.1952 2.7153 1.6668 9 6 6.9406 3.3072 0.5531 10 6 6.5770 3.0205 3.0479 11 6 6.5027 4.5111 3.4067 12 7 7.7511 4.3377 4.1644 13 6 8.3439 4.9433 5.2400 14 1 7.8015 5.6834 5.8098 15 6 9.6419 4.6062 5.5982 16 7 10.1082 4.9479 6.7806 17 14 10.7269 3.6673 4.4020 18 1 10.5532 2.2082 4.6166 19 1 10.3423 4.0120 3.0096 20 1 12.1475 4.0354 4.6286 21 6 8.0858 3.2319 3.2545 22 6 3.6945 -0.7021 -0.0043 23 7 4.7050 -1.5631 0.0015 24 6 4.5002 -2.8622 0.0009 25 6 3.2190 -3.3962 0.0005 26 6 2.1352 -2.5580 0.0001 27 6 2.3679 -1.1775 -0.0004 28 1 -0.3633 -0.0003 -1.0276 29 1 -0.3632 -0.8898 0.5142 30 1 -0.3633 0.8901 0.5136 31 1 4.4952 2.4991 -0.5140 32 1 5.6039 1.1067 -0.5135 33 1 7.7652 2.6498 0.2777 34 1 6.2763 3.4345 -0.3017 35 1 7.3347 4.2776 0.8545 36 1 6.1105 2.3609 3.7796 37 1 5.6468 4.7649 4.0323 38 1 6.6056 5.1714 2.5456 39 1 9.5723 5.4984 7.3727 40 1 8.6064 3.5542 2.3527 41 1 8.5789 2.3957 3.7504 42 1 5.3493 -3.5295 0.0010 43 1 3.0771 -4.4669 -0.0004 44 1 1.1294 -2.9511 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043424627.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:10 Heat of formation + Delta-G solvation = 147.442110 kcal Electronic energy + Delta-G solvation = -27642.081133 eV Core-core repulsion = 23792.081250 eV Total energy + Delta-G solvation = -3849.999883 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.82061 -40.10750 -38.47569 -37.95602 -34.79583 -34.52136 -32.37022 -32.04163 -30.51048 -30.01644 -28.14332 -26.96958 -26.26589 -25.33486 -24.12912 -23.22761 -22.38965 -20.39979 -19.83526 -18.93827 -17.80467 -17.67110 -17.38578 -17.16663 -16.45256 -16.19499 -15.66119 -15.48602 -14.97305 -14.63759 -14.03408 -13.81775 -13.64809 -13.62009 -13.49421 -13.33708 -13.15565 -12.93975 -12.79337 -12.47745 -12.38310 -12.24813 -12.03565 -11.96062 -11.66450 -11.22798 -11.08375 -10.79112 -10.65665 -10.24284 -9.87716 -9.70975 -9.68434 -9.27228 -9.16324 -8.76172 -8.43544 -8.39289 -7.23946 -6.35141 -3.27758 0.55281 1.06226 1.79752 2.18955 2.56629 3.01878 3.39093 3.44010 3.56048 3.59282 3.87224 4.00249 4.25271 4.34991 4.51312 4.56075 4.71404 4.78420 4.80097 4.85101 4.96670 5.03495 5.08907 5.10527 5.21840 5.33291 5.34359 5.43630 5.46766 5.53703 5.59862 5.76902 5.82808 5.87450 6.01422 6.11650 6.25572 6.29363 6.34814 6.41049 6.55320 6.92072 7.04502 7.26184 7.43399 7.70498 8.15975 8.20302 8.93106 9.45556 10.30254 11.15019 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.020348 B = 0.002751 C = 0.002609 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.711526 B =10176.957987 C =10729.298451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.106 3.894 3 N -0.228 5.228 4 N -0.375 5.375 5 C 0.127 3.873 6 C 0.498 3.502 7 O -0.525 6.525 8 N -0.597 5.597 9 C 0.069 3.931 10 C 0.103 3.897 11 C 0.108 3.892 12 N -0.616 5.616 13 C -0.306 4.306 14 H 0.084 0.916 15 C -0.022 4.022 16 N -0.928 5.928 17 Si 1.063 2.937 18 H -0.292 1.292 19 H -0.282 1.282 20 H -0.294 1.294 21 C 0.094 3.906 22 C 0.327 3.673 23 N -0.501 5.501 24 C 0.169 3.831 25 C -0.220 4.220 26 C 0.005 3.995 27 C -0.223 4.223 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.123 0.877 32 H 0.125 0.875 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.049 0.951 38 H 0.038 0.962 39 H 0.262 0.738 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.165 0.835 43 H 0.141 0.859 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.980 -14.869 -21.809 31.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 N -0.041 5.041 4 N -0.164 5.164 5 C 0.002 3.998 6 C 0.283 3.717 7 O -0.401 6.401 8 N -0.331 5.331 9 C -0.074 4.074 10 C -0.001 4.001 11 C -0.020 4.020 12 N -0.344 5.344 13 C -0.432 4.432 14 H 0.101 0.899 15 C -0.222 4.222 16 N -0.570 5.570 17 Si 0.894 3.106 18 H -0.220 1.220 19 H -0.209 1.209 20 H -0.221 1.221 21 C -0.032 4.032 22 C 0.088 3.912 23 N -0.215 5.215 24 C 0.000 4.000 25 C -0.242 4.242 26 C -0.023 4.023 27 C -0.233 4.233 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.141 0.859 32 H 0.142 0.858 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.067 0.933 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.074 0.926 42 H 0.182 0.818 43 H 0.158 0.842 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.681 -13.864 -21.234 29.302 hybrid contribution -1.944 -0.151 0.186 1.959 sum -16.625 -14.015 -21.048 30.263 Atomic orbital electron populations 1.20256 0.85279 1.04152 1.03473 1.23486 0.96755 0.88382 0.98655 1.76688 0.86093 1.22890 1.18478 1.47508 1.03687 1.01154 1.64068 1.21518 0.86814 0.95206 0.96307 1.20771 0.80539 0.79171 0.91194 1.90738 1.52403 1.51213 1.45719 1.47881 1.31186 1.46271 1.07773 1.21918 0.96700 1.00178 0.88599 1.23588 0.97154 0.98070 0.81331 1.22776 0.91391 0.93359 0.94445 1.45874 1.21072 1.36427 1.31037 1.20107 0.97941 1.23158 1.02002 0.89854 1.25808 0.94926 1.01742 0.99674 1.70893 1.41928 1.37737 1.06446 0.83771 0.76050 0.75651 0.75148 1.21998 1.20867 1.22108 1.23102 0.93685 0.92296 0.94158 1.18934 0.90424 0.85964 0.95859 1.66749 1.33623 1.03192 1.17945 1.22746 0.97000 0.89364 0.90857 1.21630 0.93354 1.01244 1.07964 1.20738 0.99921 0.90137 0.91501 1.20366 0.93585 0.94933 1.14407 0.89807 0.89937 0.89981 0.85928 0.85771 0.91918 0.91324 0.89809 0.85883 0.93272 0.94424 0.92728 0.93182 0.92583 0.81781 0.84152 0.84402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.48 36.01 0.38 -0.11 16 2 C 0.11 1.22 7.44 -80.22 -0.60 0.63 16 3 N -0.23 -3.20 12.40 34.82 0.43 -2.77 16 4 N -0.38 -5.40 3.13 -61.60 -0.19 -5.59 16 5 C 0.13 1.55 5.44 -5.20 -0.03 1.52 16 6 C 0.50 8.01 7.74 -10.99 -0.09 7.92 16 7 O -0.53 -10.87 15.94 5.55 0.09 -10.78 16 8 N -0.60 -9.14 3.12 -173.56 -0.54 -9.68 16 9 C 0.07 0.75 8.92 59.85 0.53 1.29 16 10 C 0.10 1.96 4.57 -67.68 -0.31 1.65 16 11 C 0.11 2.21 8.24 -8.52 -0.07 2.14 16 12 N -0.62 -15.44 3.62 -184.65 -0.67 -16.11 16 13 C -0.31 -8.94 11.03 -15.06 -0.17 -9.11 16 14 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 15 C -0.02 -0.66 5.50 -17.43 -0.10 -0.76 16 16 N -0.93 -29.53 13.70 55.49 0.76 -28.77 16 17 Si 1.06 26.64 25.50 -169.99 -4.34 22.30 16 18 H -0.29 -7.12 6.97 56.52 0.39 -6.73 16 19 H -0.28 -6.42 5.66 56.52 0.32 -6.10 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 21 C 0.09 2.01 5.03 -8.39 -0.04 1.97 16 22 C 0.33 4.65 7.97 -156.11 -1.24 3.41 16 23 N -0.50 -6.72 10.40 -12.34 -0.13 -6.85 16 24 C 0.17 1.63 11.15 -17.48 -0.19 1.43 16 25 C -0.22 -1.70 10.04 -39.82 -0.40 -2.10 16 26 C 0.01 0.05 10.18 -39.37 -0.40 -0.35 16 27 C -0.22 -2.67 6.35 -105.18 -0.67 -3.34 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.12 1.14 7.40 -51.93 -0.38 0.76 16 32 H 0.12 1.25 8.10 -51.93 -0.42 0.82 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 35 H 0.08 0.98 6.18 -51.93 -0.32 0.66 16 36 H 0.12 2.62 7.29 -51.93 -0.38 2.24 16 37 H 0.05 1.02 8.14 -51.92 -0.42 0.60 16 38 H 0.04 0.71 6.97 -51.93 -0.36 0.35 16 39 H 0.26 8.25 8.73 -40.82 -0.36 7.89 16 40 H 0.05 0.99 5.45 -51.93 -0.28 0.71 16 41 H 0.06 1.26 6.22 -51.93 -0.32 0.94 16 42 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 43 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 44 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 LS Contribution 363.34 15.07 5.48 5.48 Total: -1.00 -39.45 363.34 -8.35 -47.80 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.85 Total: -1.22 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -3.39 Total: 6.19 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -0.34 Total: -69.77 kcal Atomic # 8 Polarization: -10.87 SS G_CDS: 0.09 Total: -10.78 kcal Atomic # 14 Polarization: 26.64 SS G_CDS: -4.34 Total: 22.30 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -39.45 -8.35 -47.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043424627.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 195.244 kcal (2) G-P(sol) polarization free energy of solvation -39.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds