Wall clock time and date at job start Tue Mar 31 2020 05:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50691 * 109.47373 * 2 1 4 4 N 1.30286 * 124.97227 * 304.97638 * 3 2 1 5 5 C 1.34654 * 109.66713 * 180.02562 * 4 3 2 6 6 C 1.40826 * 107.26778 * 0.19950 * 5 4 3 7 7 N 1.32109 * 120.46748 * 180.31811 * 6 5 4 8 8 C 1.31723 * 121.94609 * 359.74360 * 7 6 5 9 9 C 1.38337 * 121.55064 * 0.02562 * 8 7 6 10 10 C 1.39644 * 119.37350 * 359.97438 * 9 8 7 11 11 C 1.47757 * 121.07324 * 179.97438 * 10 9 8 12 12 O 1.21561 * 120.00347 * 218.11874 * 11 10 9 13 13 N 1.34779 * 120.00130 * 38.12472 * 11 10 9 14 14 C 1.46499 * 119.99902 * 0.02562 * 13 11 10 15 15 C 1.46500 * 120.00267 * 180.02562 * 13 11 10 16 16 C 1.53496 * 114.20527 * 119.99972 * 15 13 11 17 17 N 1.47065 * 87.98637 * 87.72022 * 16 15 13 18 18 C 1.36933 * 136.05456 * 207.08545 * 17 16 15 19 19 H 1.07998 * 120.00449 * 12.71281 * 18 17 16 20 20 C 1.38812 * 119.99854 * 192.71357 * 18 17 16 21 21 N 1.31617 * 120.00054 * 189.39327 * 20 18 17 22 22 Si 1.86800 * 119.99981 * 9.39575 * 20 18 17 23 23 H 1.48501 * 109.47254 * 270.00087 * 22 20 18 24 24 H 1.48506 * 109.47429 * 29.99868 * 22 20 18 25 25 H 1.48501 * 109.47196 * 150.00103 * 22 20 18 26 26 C 1.47062 * 87.88426 * 27.33999 * 17 16 15 27 27 N 1.35992 * 124.97451 * 125.48010 * 3 2 1 28 28 H 0.97000 * 126.35267 * 359.49447 * 27 3 2 29 29 H 1.09001 * 109.47495 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47335 * 300.00409 * 1 2 3 31 31 H 1.09006 * 109.46980 * 59.99946 * 1 2 3 32 32 H 1.09001 * 109.47003 * 239.99938 * 2 1 3 33 33 H 1.08997 * 109.46913 * 120.00193 * 2 1 3 34 34 H 1.08008 * 119.22518 * 180.02562 * 8 7 6 35 35 H 1.07999 * 120.31551 * 180.02562 * 9 8 7 36 36 H 1.09003 * 109.46826 * 244.69016 * 14 13 11 37 37 H 1.08996 * 109.47563 * 4.69063 * 14 13 11 38 38 H 1.09000 * 109.47321 * 124.68917 * 14 13 11 39 39 H 1.09000 * 113.28165 * 346.93445 * 15 13 11 40 40 H 1.09002 * 113.47076 * 332.93272 * 16 15 13 41 41 H 1.09002 * 113.46517 * 202.50153 * 16 15 13 42 42 H 0.96998 * 120.00390 * 354.83851 * 21 20 18 43 43 H 1.09006 * 113.46900 * 87.43978 * 26 17 16 44 44 H 1.09005 * 113.46968 * 217.87608 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 7 1.7043 2.3288 -0.8748 5 6 2.3298 3.4852 -0.5839 6 6 3.1105 3.2603 0.5665 7 7 3.8346 4.2356 1.0858 8 6 3.8621 5.4413 0.5560 9 6 3.1306 5.7513 -0.5765 10 6 2.3439 4.7649 -1.1750 11 6 1.5473 5.0548 -2.3851 12 8 0.4411 4.5679 -2.5158 13 7 2.0470 5.8592 -3.3442 14 6 3.3803 6.4455 -3.1871 15 6 1.2569 6.1472 -4.5438 16 6 0.9468 7.6362 -4.7507 17 7 2.2228 7.7483 -5.4732 18 6 3.1350 8.7405 -5.7153 19 1 3.0861 9.6659 -5.1608 20 6 4.1224 8.5568 -6.6734 21 7 5.1061 9.4248 -6.7794 22 14 4.0550 7.0778 -7.8125 23 1 4.7902 5.9443 -7.1961 24 1 2.6394 6.6875 -8.0339 25 1 4.6818 7.4256 -9.1130 26 6 2.0848 6.3275 -5.8268 27 7 2.9020 1.9400 0.9074 28 1 3.2960 1.4713 1.6597 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.4701 6.2060 1.0167 35 1 3.1682 6.7464 -0.9943 36 1 3.2940 7.5296 -3.1129 37 1 3.8445 6.0552 -2.2815 38 1 3.9944 6.1882 -4.0501 39 1 0.3944 5.4908 -4.6595 40 1 0.9217 8.2075 -3.8227 41 1 0.0747 7.8146 -5.3797 42 1 5.1018 10.2310 -6.2402 43 1 1.5127 6.1608 -6.7395 44 1 3.0294 5.7836 -5.8156 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043441777.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:54 Heat of formation + Delta-G solvation = 139.651144 kcal Electronic energy + Delta-G solvation = -28251.775048 eV Core-core repulsion = 24401.437323 eV Total energy + Delta-G solvation = -3850.337725 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.68808 -40.17162 -38.69310 -37.76433 -34.56144 -33.87795 -33.72241 -32.39115 -31.38247 -29.43017 -28.19683 -26.50575 -25.38564 -25.28514 -24.01202 -23.31787 -22.23253 -21.02019 -20.57509 -18.94879 -18.25503 -17.72952 -17.45655 -16.93554 -16.17917 -16.03460 -15.51609 -15.27951 -14.72111 -14.59501 -14.52743 -14.26305 -13.92294 -13.72383 -13.41798 -13.21606 -13.06947 -12.74699 -12.47716 -12.42062 -11.99406 -11.82260 -11.56080 -11.51758 -11.35111 -11.16241 -10.95754 -10.84298 -10.56096 -10.21756 -9.97136 -9.59803 -9.28734 -9.14807 -8.94666 -8.81670 -8.61797 -8.12757 -7.19274 -6.30837 -3.28460 0.29408 0.95711 2.20240 2.49221 2.90817 3.13872 3.40223 3.46862 3.60372 3.66730 3.68683 4.10433 4.34274 4.49289 4.56529 4.61749 4.72714 4.76004 4.82055 4.93085 5.11516 5.18142 5.25100 5.39014 5.43774 5.46188 5.53625 5.62898 5.71473 5.79872 5.86801 5.94365 5.97504 6.08802 6.25568 6.30482 6.33081 6.36832 6.40700 6.60891 6.81647 7.00875 7.11916 7.54714 7.60643 7.72216 8.21062 8.38145 8.94398 9.46890 10.35514 11.17210 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.017406 B = 0.003327 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.230799 B = 8414.774219 C = 9024.459368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.043 4.043 3 C 0.297 3.703 4 N -0.462 5.462 5 C 0.054 3.946 6 C 0.233 3.767 7 N -0.471 5.471 8 C 0.132 3.868 9 C -0.152 4.152 10 C -0.026 4.026 11 C 0.557 3.443 12 O -0.521 6.521 13 N -0.572 5.572 14 C 0.067 3.933 15 C 0.099 3.901 16 C 0.105 3.895 17 N -0.622 5.622 18 C -0.300 4.300 19 H 0.081 0.919 20 C -0.021 4.021 21 N -0.934 5.934 22 Si 1.057 2.943 23 H -0.294 1.294 24 H -0.277 1.277 25 H -0.296 1.296 26 C 0.093 3.907 27 N -0.586 5.586 28 H 0.427 0.573 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.075 0.925 32 H 0.101 0.899 33 H 0.084 0.916 34 H 0.175 0.825 35 H 0.162 0.838 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.107 0.893 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.261 0.739 43 H 0.061 0.939 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 -16.869 17.483 24.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.082 4.082 3 C 0.030 3.970 4 N -0.181 5.181 5 C -0.069 4.069 6 C -0.004 4.004 7 N -0.185 5.185 8 C -0.034 4.034 9 C -0.174 4.174 10 C -0.039 4.039 11 C 0.344 3.656 12 O -0.397 6.397 13 N -0.303 5.303 14 C -0.075 4.075 15 C -0.006 4.006 16 C -0.022 4.022 17 N -0.350 5.350 18 C -0.426 4.426 19 H 0.099 0.901 20 C -0.221 4.221 21 N -0.576 5.576 22 Si 0.889 3.111 23 H -0.222 1.222 24 H -0.204 1.204 25 H -0.224 1.224 26 C -0.033 4.033 27 N -0.201 5.201 28 H 0.267 0.733 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.094 0.906 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.191 0.809 35 H 0.180 0.820 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.124 0.876 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.300 -17.990 16.151 24.555 hybrid contribution -0.348 1.159 1.382 1.837 sum -4.648 -16.830 17.533 24.744 Atomic orbital electron populations 1.21714 0.92526 1.02472 1.03729 1.20194 0.97865 0.85796 1.04310 1.23911 0.89663 0.97470 0.85968 1.70202 1.24411 0.98505 1.24987 1.19168 0.98603 0.93624 0.95546 1.18860 0.99268 0.86878 0.95395 1.66187 1.19797 0.99880 1.32603 1.22542 0.96924 0.91513 0.92431 1.22517 0.96829 1.01021 0.97083 1.19579 0.97105 0.91149 0.96079 1.17926 0.86118 0.79040 0.82512 1.90783 1.19739 1.50947 1.78195 1.47244 1.17963 1.46474 1.18653 1.22392 0.82604 1.00004 1.02534 1.22550 0.94782 0.98103 0.85148 1.22831 0.90444 0.92810 0.96098 1.46276 1.19465 1.06476 1.62812 1.20105 1.06731 0.96601 1.19188 0.90138 1.25774 0.93925 1.04518 0.97854 1.70899 1.30543 1.11754 1.44378 0.83882 0.75696 0.74792 0.76738 1.22208 1.20361 1.22383 1.23162 0.98042 0.87423 0.94717 1.42742 1.40819 1.08394 1.28144 0.73324 0.91389 0.92526 0.90614 0.88082 0.89710 0.80853 0.82029 0.90234 0.90493 0.91238 0.87556 0.93449 0.93524 0.92869 0.92173 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.85 37.16 0.37 -0.64 16 2 C -0.04 -0.27 6.56 -27.89 -0.18 -0.45 16 3 C 0.30 3.21 7.37 -154.72 -1.14 2.06 16 4 N -0.46 -7.09 11.13 -8.07 -0.09 -7.18 16 5 C 0.05 0.85 6.88 -84.62 -0.58 0.27 16 6 C 0.23 3.11 8.46 -155.65 -1.32 1.79 16 7 N -0.47 -5.95 10.35 -12.30 -0.13 -6.08 16 8 C 0.13 1.43 11.14 -17.56 -0.20 1.23 16 9 C -0.15 -1.87 7.43 -39.02 -0.29 -2.16 16 10 C -0.03 -0.41 5.36 -104.45 -0.56 -0.97 16 11 C 0.56 10.13 7.40 -12.37 -0.09 10.04 16 12 O -0.52 -10.88 16.40 5.31 0.09 -10.80 16 13 N -0.57 -10.24 3.12 -174.71 -0.54 -10.78 16 14 C 0.07 1.12 7.89 59.85 0.47 1.59 16 15 C 0.10 1.85 4.67 -67.68 -0.32 1.54 16 16 C 0.11 2.07 8.26 -8.52 -0.07 2.00 16 17 N -0.62 -14.43 2.38 -184.64 -0.44 -14.87 16 18 C -0.30 -8.12 10.96 -15.06 -0.17 -8.28 16 19 H 0.08 2.32 8.06 -52.49 -0.42 1.89 16 20 C -0.02 -0.61 5.50 -17.43 -0.10 -0.70 16 21 N -0.93 -28.49 13.70 55.49 0.76 -27.73 16 22 Si 1.06 25.96 25.59 -169.99 -4.35 21.61 16 23 H -0.29 -6.99 7.08 56.52 0.40 -6.59 16 24 H -0.28 -6.30 5.25 56.52 0.30 -6.01 16 25 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 26 C 0.09 1.93 4.73 -8.38 -0.04 1.89 16 27 N -0.59 -5.79 6.23 -9.43 -0.06 -5.85 16 28 H 0.43 2.60 8.96 -40.82 -0.37 2.24 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.17 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.16 1.76 6.08 -52.49 -0.32 1.44 16 36 H 0.08 1.43 7.71 -51.93 -0.40 1.03 16 37 H 0.08 1.07 3.86 -51.93 -0.20 0.87 16 38 H 0.07 1.33 6.88 -51.93 -0.36 0.97 16 39 H 0.11 1.92 7.29 -51.93 -0.38 1.54 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.26 7.86 8.73 -40.82 -0.36 7.51 16 43 H 0.06 1.22 6.77 -51.93 -0.35 0.87 16 44 H 0.05 1.16 5.42 -51.93 -0.28 0.88 16 LS Contribution 355.60 15.07 5.36 5.36 Total: -1.00 -36.28 355.60 -9.33 -45.61 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -5.72 Total: 1.50 kcal Atomic # 6 Polarization: 13.42 SS G_CDS: -4.21 Total: 9.21 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -0.50 Total: -72.49 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 25.96 SS G_CDS: -4.35 Total: 21.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.28 -9.33 -45.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043441777.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.266 kcal (2) G-P(sol) polarization free energy of solvation -36.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 139.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds