Wall clock time and date at job start Tue Mar 31 2020 05:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34776 * 119.99928 * 2 1 4 4 O 1.21282 * 119.99739 * 185.08433 * 3 2 1 5 5 C 1.50694 * 119.99989 * 5.09013 * 3 2 1 6 6 H 1.08999 * 109.46469 * 35.84746 * 5 3 2 7 7 C 1.52909 * 109.46297 * 275.87898 * 5 3 2 8 8 C 1.50468 * 109.92492 * 288.51551 * 7 5 3 9 9 O 1.21290 * 119.60791 * 144.80697 * 8 7 5 10 10 N 1.34563 * 120.77485 * 324.85203 * 8 7 5 11 11 C 1.39820 * 120.45314 * 0.79358 * 10 8 7 12 12 C 1.38868 * 120.18820 * 198.50990 * 11 10 8 13 13 C 1.38111 * 119.88771 * 179.91778 * 12 11 10 14 14 C 1.38305 * 120.09246 * 0.06397 * 13 12 11 15 15 C 1.38273 * 120.14923 * 359.97438 * 14 13 12 16 16 C 1.38098 * 120.02669 * 359.97438 * 15 14 13 17 17 C 1.46498 * 119.99824 * 179.97438 * 2 1 3 18 18 C 1.53947 * 113.74331 * 41.58357 * 17 2 1 19 19 N 1.47814 * 86.03661 * 222.08062 * 18 17 2 20 20 C 1.36930 * 134.45764 * 204.64126 * 19 18 17 21 21 H 1.08008 * 120.00473 * 179.86880 * 20 19 18 22 22 C 1.38815 * 120.00133 * 359.86864 * 20 19 18 23 23 N 1.31623 * 119.99581 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00179 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47199 * 90.00055 * 24 22 20 26 26 H 1.48505 * 109.47141 * 210.00117 * 24 22 20 27 27 H 1.48500 * 109.47366 * 330.00073 * 24 22 20 28 28 C 1.47582 * 91.04935 * 24.55002 * 19 18 17 29 29 H 1.08995 * 109.47474 * 204.72962 * 1 2 3 30 30 H 1.09001 * 109.46767 * 84.73329 * 1 2 3 31 31 H 1.08998 * 109.47428 * 324.73483 * 1 2 3 32 32 H 1.08991 * 109.39826 * 48.68367 * 7 5 3 33 33 H 1.09001 * 109.39841 * 168.41854 * 7 5 3 34 34 H 0.96997 * 119.77109 * 180.77170 * 10 8 7 35 35 H 1.07995 * 120.05670 * 359.94365 * 12 11 10 36 36 H 1.08002 * 119.94969 * 180.02562 * 13 12 11 37 37 H 1.07997 * 119.92245 * 180.02562 * 14 13 12 38 38 H 1.08003 * 119.98610 * 180.02562 * 15 14 13 39 39 H 1.09009 * 112.94314 * 173.17318 * 17 2 1 40 40 H 1.08997 * 113.76883 * 336.34393 * 18 17 2 41 41 H 1.08993 * 113.77110 * 107.74185 * 18 17 2 42 42 H 0.97001 * 119.99823 * 180.02562 * 23 22 20 43 43 H 1.09003 * 113.76983 * 221.15453 * 28 19 18 44 44 H 1.08998 * 113.87378 * 89.76969 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3481 1.1692 -0.0931 5 6 1.3898 2.4697 0.1158 6 1 0.5356 2.3396 0.7801 7 6 0.8988 2.8997 -1.2670 8 6 2.0626 3.3513 -2.1069 9 8 2.0641 3.1271 -3.2989 10 7 3.1022 4.0002 -1.5510 11 6 3.1267 4.2524 -0.1759 12 6 3.9706 5.2270 0.3403 13 6 3.9886 5.4721 1.6994 14 6 3.1688 4.7478 2.5456 15 6 2.3281 3.7762 2.0345 16 6 2.3049 3.5272 0.6764 17 6 2.1975 -1.2687 0.0006 18 6 1.5945 -2.3330 -0.9342 19 7 1.8528 -3.2926 0.1599 20 6 2.0525 -4.6459 0.2215 21 1 2.2285 -5.1231 1.1743 22 6 2.0287 -5.4046 -0.9408 23 7 1.8146 -4.8230 -2.1020 24 14 2.3017 -7.2506 -0.8569 25 1 0.9968 -7.9364 -0.6781 26 1 2.9364 -7.7148 -2.1167 27 1 3.1891 -7.5681 0.2907 28 6 1.8115 -2.2068 1.1586 29 1 -0.3634 -0.9334 0.4299 30 1 -0.3633 0.0943 -1.0234 31 1 -0.3634 0.8390 0.5933 32 1 0.4055 2.0584 -1.7537 33 1 0.1900 3.7209 -1.1603 34 1 3.8397 4.2947 -2.1080 35 1 4.6114 5.7925 -0.3199 36 1 4.6442 6.2302 2.1019 37 1 3.1848 4.9420 3.6078 38 1 1.6887 3.2124 2.6977 39 1 3.2731 -1.1385 -0.1188 40 1 0.5359 -2.1827 -1.1460 41 1 2.1869 -2.5169 -1.8304 42 1 1.7976 -5.3532 -2.9141 43 1 2.5769 -2.2901 1.9302 44 1 0.8175 -2.0181 1.5642 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043499056.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:41 Heat of formation + Delta-G solvation = 25.415253 kcal Electronic energy + Delta-G solvation = -28416.103832 eV Core-core repulsion = 24528.519716 eV Total energy + Delta-G solvation = -3887.584116 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53076 -39.57834 -38.79653 -37.61908 -35.34773 -34.73165 -33.90182 -31.94678 -30.37301 -29.60087 -27.82840 -26.76481 -25.67987 -24.84790 -23.48243 -22.91111 -22.70976 -20.59859 -19.06797 -18.47585 -18.15214 -17.49014 -17.05319 -16.78786 -16.34770 -15.82138 -15.33581 -15.06290 -14.91058 -14.69698 -14.58369 -13.93311 -13.85954 -13.82214 -13.51723 -13.11500 -12.81607 -12.70538 -12.45151 -12.30017 -12.05494 -11.80934 -11.60032 -11.49914 -11.33516 -11.31360 -10.90948 -10.84014 -10.71214 -10.31864 -10.16848 -10.07702 -9.63142 -9.57413 -9.02476 -8.82390 -8.22902 -8.16585 -6.93648 -5.80007 -3.13490 0.97982 1.09019 2.39799 2.71636 2.87878 3.15091 3.38493 3.43155 3.45555 3.62522 4.07742 4.27638 4.41026 4.44023 4.58609 4.59064 4.78977 4.93610 5.07063 5.13901 5.16789 5.22976 5.25443 5.33148 5.42588 5.48322 5.57700 5.66291 5.72716 5.82930 5.89692 6.05736 6.12429 6.13448 6.27918 6.38806 6.48208 6.53623 6.66588 6.73360 7.00204 7.17905 7.30277 7.50142 7.69341 7.83696 7.93418 8.35975 9.00330 9.66716 10.53042 11.36929 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.020431 B = 0.002987 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.163233 B = 9370.498177 C = 9939.278871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.071 3.929 2 N -0.596 5.596 3 C 0.512 3.488 4 O -0.529 6.529 5 C -0.068 4.068 6 H 0.118 0.882 7 C -0.130 4.130 8 C 0.525 3.475 9 O -0.522 6.522 10 N -0.657 5.657 11 C 0.183 3.817 12 C -0.156 4.156 13 C -0.086 4.086 14 C -0.145 4.145 15 C -0.075 4.075 16 C -0.104 4.104 17 C 0.090 3.910 18 C 0.157 3.843 19 N -0.605 5.605 20 C -0.225 4.225 21 H 0.082 0.918 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.914 3.086 25 H -0.288 1.288 26 H -0.289 1.289 27 H -0.280 1.280 28 C 0.109 3.891 29 H 0.083 0.917 30 H 0.059 0.941 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.411 0.589 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.115 0.885 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.255 0.745 43 H 0.046 0.954 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.952 23.664 8.191 25.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.329 5.329 3 C 0.298 3.702 4 O -0.405 6.405 5 C -0.089 4.089 6 H 0.136 0.864 7 C -0.170 4.170 8 C 0.313 3.687 9 O -0.397 6.397 10 N -0.301 5.301 11 C 0.087 3.913 12 C -0.177 4.177 13 C -0.105 4.105 14 C -0.164 4.164 15 C -0.093 4.093 16 C -0.107 4.107 17 C -0.013 4.013 18 C 0.031 3.969 19 N -0.332 5.332 20 C -0.353 4.353 21 H 0.100 0.900 22 C -0.203 4.203 23 N -0.565 5.565 24 Si 0.744 3.256 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.205 1.205 28 C -0.018 4.018 29 H 0.102 0.898 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.249 0.751 35 H 0.145 0.855 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.133 0.867 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -2.449 23.071 7.358 24.340 hybrid contribution 0.277 -1.000 -0.152 1.048 sum -2.172 22.072 7.206 23.320 Atomic orbital electron populations 1.21901 0.79957 1.03464 1.01873 1.48024 1.06876 1.06085 1.71883 1.20290 0.88041 0.84739 0.77115 1.90709 1.13935 1.86949 1.48921 1.20279 0.98745 0.92404 0.97486 0.86382 1.21681 0.96742 1.04720 0.93897 1.20520 0.83707 0.76193 0.88236 1.90799 1.79288 1.53863 1.15723 1.43507 1.22727 1.56776 1.07085 1.17544 0.96458 0.94620 0.82679 1.20741 1.01698 0.98944 0.96315 1.20957 0.98021 0.98941 0.92533 1.21046 0.97749 0.97601 0.99959 1.20834 0.98343 0.96917 0.93216 1.18952 1.00475 0.97713 0.93565 1.24077 0.98037 0.79593 0.99606 1.22667 0.97255 0.83307 0.93701 1.45692 1.82879 1.02336 1.02296 1.18982 1.42346 0.80240 0.93689 0.90044 1.24816 1.01938 0.98300 0.95246 1.69820 1.55023 1.34420 0.97277 0.86088 0.77743 0.84699 0.77025 1.21558 1.21561 1.20543 1.22961 0.97918 0.87479 0.93425 0.89796 0.92263 0.91619 0.86596 0.86699 0.75090 0.85474 0.85541 0.85675 0.85375 0.86691 0.95013 0.90540 0.93499 0.93548 0.94652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.38 59.85 0.50 1.33 16 2 N -0.60 -9.34 3.10 -175.74 -0.54 -9.88 16 3 C 0.51 7.95 6.40 -10.99 -0.07 7.88 16 4 O -0.53 -10.36 15.57 5.56 0.09 -10.28 16 5 C -0.07 -0.73 2.04 -92.99 -0.19 -0.92 16 6 H 0.12 0.88 6.20 -51.93 -0.32 0.56 16 7 C -0.13 -1.35 5.42 -28.04 -0.15 -1.50 16 8 C 0.53 7.21 7.37 -11.19 -0.08 7.12 16 9 O -0.52 -9.07 17.91 5.55 0.10 -8.97 16 10 N -0.66 -7.85 5.36 -10.02 -0.05 -7.90 16 11 C 0.18 2.04 6.32 -83.76 -0.53 1.51 16 12 C -0.16 -1.41 9.93 -39.39 -0.39 -1.80 16 13 C -0.09 -0.68 10.04 -39.60 -0.40 -1.08 16 14 C -0.14 -1.18 10.04 -39.54 -0.40 -1.57 16 15 C -0.07 -0.69 9.69 -39.62 -0.38 -1.07 16 16 C -0.10 -1.14 4.35 -104.47 -0.45 -1.59 16 17 C 0.09 1.80 4.42 -70.14 -0.31 1.49 16 18 C 0.16 3.71 6.97 -2.84 -0.02 3.69 16 19 N -0.61 -15.54 3.70 -177.87 -0.66 -16.20 16 20 C -0.23 -6.33 10.70 -15.06 -0.16 -6.49 16 21 H 0.08 2.20 7.83 -52.48 -0.41 1.79 16 22 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 23 N -0.92 -27.41 11.39 55.49 0.63 -26.78 16 24 Si 0.91 22.21 29.55 -169.99 -5.02 17.19 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 28 C 0.11 2.23 8.43 -2.97 -0.02 2.21 16 29 H 0.08 1.07 6.13 -51.93 -0.32 0.75 16 30 H 0.06 0.65 7.65 -51.93 -0.40 0.26 16 31 H 0.07 0.51 6.04 -51.93 -0.31 0.20 16 32 H 0.12 1.21 7.07 -51.93 -0.37 0.84 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.41 4.32 8.83 -40.82 -0.36 3.96 16 35 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 39 H 0.12 2.56 7.19 -51.92 -0.37 2.18 16 40 H 0.03 0.73 6.88 -51.93 -0.36 0.38 16 41 H 0.08 2.07 7.16 -51.93 -0.37 1.70 16 42 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 43 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 44 H 0.04 0.66 6.73 -51.93 -0.35 0.31 16 LS Contribution 358.44 15.07 5.40 5.40 Total: -1.00 -36.70 358.44 -8.83 -45.53 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: -5.61 Total: 2.96 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -3.16 Total: 8.92 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.62 Total: -60.76 kcal Atomic # 8 Polarization: -19.43 SS G_CDS: 0.19 Total: -19.24 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.70 -8.83 -45.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043499056.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.947 kcal (2) G-P(sol) polarization free energy of solvation -36.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds