Wall clock time and date at job start Tue Mar 31 2020 05:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 120.00184 * 2 1 4 4 O 1.21280 * 119.99971 * 179.97438 * 3 2 1 5 5 C 1.50695 * 119.99577 * 359.97438 * 3 2 1 6 6 H 1.08996 * 109.46426 * 299.97550 * 5 3 2 7 7 C 1.52904 * 109.46664 * 59.94468 * 5 3 2 8 8 C 1.50521 * 109.89153 * 71.42107 * 7 5 3 9 9 O 1.21288 * 119.62744 * 215.21776 * 8 7 5 10 10 N 1.34572 * 120.75785 * 35.24923 * 8 7 5 11 11 C 1.39820 * 120.45123 * 359.13073 * 10 8 7 12 12 C 1.38868 * 120.18620 * 161.57346 * 11 10 8 13 13 C 1.38107 * 119.88987 * 179.97438 * 12 11 10 14 14 C 1.38308 * 120.08912 * 359.93397 * 13 12 11 15 15 C 1.38272 * 120.15044 * 0.02746 * 14 13 12 16 16 C 1.38094 * 120.02716 * 0.02562 * 15 14 13 17 17 C 1.46502 * 119.99792 * 179.97438 * 2 1 3 18 18 C 1.53499 * 114.20657 * 300.00459 * 17 2 1 19 19 N 1.47061 * 87.98586 * 87.52056 * 18 17 2 20 20 C 1.36942 * 136.05807 * 207.08109 * 19 18 17 21 21 H 1.07994 * 119.99475 * 6.59606 * 20 19 18 22 22 C 1.38809 * 119.99937 * 186.58710 * 20 19 18 23 23 N 1.31617 * 120.00069 * 6.44924 * 22 20 19 24 24 Si 1.86799 * 119.99919 * 186.44336 * 22 20 19 25 25 H 1.48498 * 109.47071 * 265.02255 * 24 22 20 26 26 H 1.48501 * 109.47365 * 145.02124 * 24 22 20 27 27 H 1.48502 * 109.47155 * 25.02245 * 24 22 20 28 28 C 1.47066 * 87.88706 * 27.34157 * 19 18 17 29 29 H 1.08995 * 109.47380 * 270.00574 * 1 2 3 30 30 H 1.09003 * 109.46743 * 30.00660 * 1 2 3 31 31 H 1.09005 * 109.46897 * 149.99893 * 1 2 3 32 32 H 1.08997 * 109.40085 * 191.58113 * 7 5 3 33 33 H 1.09001 * 109.39766 * 311.31600 * 7 5 3 34 34 H 0.96998 * 119.77335 * 179.14192 * 10 8 7 35 35 H 1.07999 * 120.05806 * 359.96894 * 12 11 10 36 36 H 1.07998 * 119.95931 * 179.97438 * 13 12 11 37 37 H 1.08002 * 119.92487 * 179.97438 * 14 13 12 38 38 H 1.08003 * 119.98802 * 179.97438 * 15 14 13 39 39 H 1.09007 * 113.41340 * 166.80489 * 17 2 1 40 40 H 1.08994 * 113.46612 * 332.73683 * 18 17 2 41 41 H 1.09007 * 113.46296 * 202.30311 * 18 17 2 42 42 H 0.97004 * 120.00128 * 179.97438 * 23 22 20 43 43 H 1.09005 * 113.46934 * 87.43643 * 28 19 18 44 44 H 1.09002 * 113.46882 * 217.87781 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1671 0.0005 5 6 1.3854 2.4722 -0.0006 6 1 0.7595 2.5298 -0.8910 7 6 0.5048 2.5527 1.2468 8 6 1.3627 2.7547 2.4671 9 8 1.0424 2.2391 3.5172 10 7 2.4806 3.5014 2.4065 11 6 2.8755 4.0894 1.2011 12 6 3.7789 5.1441 1.2016 13 6 4.1652 5.7201 0.0073 14 6 3.6547 5.2469 -1.1878 15 6 2.7557 4.1964 -1.1916 16 6 2.3648 3.6171 -0.0005 17 6 2.1975 -1.2688 0.0006 18 6 1.9058 -2.1633 1.2134 19 7 0.7741 -2.7256 0.4611 20 6 -0.4282 -3.3020 0.7731 21 1 -0.7652 -3.3266 1.7988 22 6 -1.2138 -3.8546 -0.2291 23 7 -0.7497 -3.9391 -1.4578 24 14 -2.9296 -4.4784 0.1663 25 1 -2.8753 -5.9370 0.4394 26 1 -3.8272 -4.2242 -0.9892 27 1 -3.4505 -3.7698 1.3629 28 6 1.5047 -2.4023 -0.7736 29 1 -0.3634 0.0001 1.0276 30 1 -0.3633 0.8900 -0.5140 31 1 -0.3633 -0.8900 -0.5139 32 1 -0.1875 3.3888 1.1480 33 1 -0.0605 1.6267 1.3513 34 1 3.0162 3.6323 3.2046 35 1 4.1786 5.5135 2.1345 36 1 4.8673 6.5407 0.0065 37 1 3.9583 5.6996 -2.1202 38 1 2.3583 3.8292 -2.1264 39 1 3.2575 -1.1571 -0.2278 40 1 1.6037 -1.6068 2.1005 41 1 2.6941 -2.8879 1.4178 42 1 -1.2986 -4.3255 -2.1581 43 1 2.1873 -3.1899 -1.0930 44 1 0.8609 -2.0494 -1.5793 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043499057.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:45 Heat of formation + Delta-G solvation = 36.643008 kcal Electronic energy + Delta-G solvation = -29001.274666 eV Core-core repulsion = 25114.177422 eV Total energy + Delta-G solvation = -3887.097244 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.50231 -39.60440 -38.76670 -37.71775 -35.32228 -34.65830 -33.58107 -32.06886 -30.26309 -29.53521 -27.94563 -26.51285 -25.50134 -24.62047 -23.42057 -22.86004 -22.77624 -20.76449 -19.20744 -18.28790 -18.08980 -17.40877 -16.87736 -16.53835 -16.17883 -15.90329 -15.14732 -14.88989 -14.79293 -14.65944 -14.52822 -13.91475 -13.86040 -13.73001 -13.37311 -13.17553 -12.81505 -12.67696 -12.47916 -12.30559 -12.07842 -11.74438 -11.43674 -11.35596 -11.28311 -10.90393 -10.88806 -10.80109 -10.65397 -10.15261 -10.12239 -9.91385 -9.55992 -9.45887 -9.01711 -8.83080 -8.17011 -8.03173 -6.95005 -5.85510 -3.16591 1.03958 1.15679 2.44710 2.79982 2.91452 3.27422 3.34596 3.41310 3.42292 3.70227 4.16946 4.33779 4.40535 4.49937 4.66726 4.71491 4.85020 5.10235 5.14493 5.20410 5.26357 5.30226 5.40904 5.42595 5.46742 5.63964 5.68544 5.75202 5.95054 6.08787 6.09834 6.16899 6.19874 6.34074 6.47956 6.51809 6.53506 6.65928 6.70941 6.86581 7.03583 7.09531 7.23214 7.44416 7.85241 7.87569 7.90642 8.46103 8.96986 9.62549 10.57243 11.32493 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.020419 B = 0.003451 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.910980 B = 8110.690842 C = 8503.587027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.572 5.572 3 C 0.512 3.488 4 O -0.539 6.539 5 C -0.064 4.064 6 H 0.121 0.879 7 C -0.149 4.149 8 C 0.524 3.476 9 O -0.520 6.520 10 N -0.662 5.662 11 C 0.176 3.824 12 C -0.156 4.156 13 C -0.088 4.088 14 C -0.143 4.143 15 C -0.070 4.070 16 C -0.095 4.095 17 C 0.082 3.918 18 C 0.103 3.897 19 N -0.605 5.605 20 C -0.216 4.216 21 H 0.081 0.919 22 C -0.006 4.006 23 N -0.919 5.919 24 Si 0.909 3.091 25 H -0.290 1.290 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.154 3.846 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.130 0.870 34 H 0.410 0.590 35 H 0.126 0.874 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.128 0.872 39 H 0.099 0.901 40 H 0.042 0.958 41 H 0.042 0.958 42 H 0.254 0.746 43 H 0.042 0.958 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.995 20.635 0.061 21.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.302 5.302 3 C 0.298 3.702 4 O -0.416 6.416 5 C -0.086 4.086 6 H 0.139 0.861 7 C -0.189 4.189 8 C 0.312 3.688 9 O -0.395 6.395 10 N -0.306 5.306 11 C 0.080 3.920 12 C -0.177 4.177 13 C -0.106 4.106 14 C -0.162 4.162 15 C -0.089 4.089 16 C -0.098 4.098 17 C -0.023 4.023 18 C -0.024 4.024 19 N -0.331 5.331 20 C -0.344 4.344 21 H 0.099 0.901 22 C -0.203 4.203 23 N -0.566 5.566 24 Si 0.739 3.261 25 H -0.217 1.217 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.027 3.973 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.129 0.871 32 H 0.132 0.868 33 H 0.148 0.852 34 H 0.248 0.752 35 H 0.144 0.856 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.146 0.854 39 H 0.117 0.883 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.064 0.936 43 H 0.059 0.941 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.937 20.068 0.482 20.934 hybrid contribution -0.627 -0.617 0.484 1.004 sum 5.311 19.451 0.966 20.186 Atomic orbital electron populations 1.22081 0.78665 1.03960 1.02140 1.47307 1.07407 1.04673 1.70803 1.20257 0.87955 0.84713 0.77256 1.90674 1.13557 1.87174 1.50193 1.20193 0.96102 0.91866 1.00401 0.86075 1.22114 0.98236 1.07824 0.90711 1.20636 0.80766 0.76724 0.90689 1.90796 1.70552 1.46526 1.31591 1.43590 1.25909 1.50037 1.11086 1.17566 0.96171 0.93298 0.84988 1.20712 1.00785 0.96906 0.99254 1.20935 0.98715 0.99181 0.91814 1.21047 0.98818 0.98165 0.98204 1.20824 0.96360 0.95040 0.96663 1.18923 1.01108 0.97540 0.92266 1.22741 0.95678 0.83353 1.00541 1.22847 0.90998 0.93580 0.95004 1.45862 1.13994 1.71232 1.02016 1.18944 0.90981 1.30728 0.93720 0.90132 1.24793 0.99016 1.00572 0.95872 1.69846 1.36432 1.49761 1.00522 0.86153 0.83967 0.78758 0.77233 1.21689 1.21595 1.20447 1.22396 0.92386 0.90618 0.91891 0.92338 0.92727 0.87076 0.86803 0.85229 0.75225 0.85565 0.85607 0.85717 0.85386 0.88309 0.93937 0.94084 0.93585 0.94081 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.22 7.91 59.85 0.47 1.69 16 2 N -0.57 -10.07 3.12 -173.55 -0.54 -10.61 16 3 C 0.51 8.48 6.72 -10.99 -0.07 8.41 16 4 O -0.54 -10.51 15.55 5.56 0.09 -10.42 16 5 C -0.06 -0.79 1.95 -92.99 -0.18 -0.97 16 6 H 0.12 1.17 7.32 -51.93 -0.38 0.79 16 7 C -0.15 -1.79 5.12 -28.02 -0.14 -1.93 16 8 C 0.52 7.57 7.37 -11.16 -0.08 7.48 16 9 O -0.52 -9.35 17.91 5.55 0.10 -9.25 16 10 N -0.66 -8.16 5.36 -10.00 -0.05 -8.21 16 11 C 0.18 2.06 6.50 -83.76 -0.54 1.51 16 12 C -0.16 -1.48 9.92 -39.40 -0.39 -1.87 16 13 C -0.09 -0.74 10.04 -39.60 -0.40 -1.14 16 14 C -0.14 -1.27 10.04 -39.54 -0.40 -1.66 16 15 C -0.07 -0.72 9.69 -39.62 -0.38 -1.11 16 16 C -0.10 -1.14 4.15 -104.47 -0.43 -1.57 16 17 C 0.08 1.60 4.68 -67.67 -0.32 1.29 16 18 C 0.10 2.18 8.31 -8.51 -0.07 2.11 16 19 N -0.60 -14.68 2.47 -184.62 -0.46 -15.14 16 20 C -0.22 -5.73 10.35 -15.06 -0.16 -5.89 16 21 H 0.08 2.11 7.84 -52.49 -0.41 1.70 16 22 C -0.01 -0.15 5.50 -17.43 -0.10 -0.25 16 23 N -0.92 -25.80 11.81 55.49 0.66 -25.14 16 24 Si 0.91 21.20 29.56 -169.99 -5.02 16.18 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 28 C 0.15 3.45 6.25 -8.37 -0.05 3.40 16 29 H 0.06 0.99 6.78 -51.93 -0.35 0.64 16 30 H 0.05 0.68 6.11 -51.93 -0.32 0.37 16 31 H 0.11 2.27 5.38 -51.93 -0.28 1.99 16 32 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.13 1.67 4.42 -51.93 -0.23 1.45 16 34 H 0.41 4.36 8.83 -40.82 -0.36 4.00 16 35 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 36 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 39 H 0.10 1.91 7.30 -51.93 -0.38 1.53 16 40 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.07 1.60 6.71 -51.93 -0.35 1.25 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -33.58 355.40 -8.70 -42.28 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -5.57 Total: 5.45 kcal Atomic # 6 Polarization: 12.76 SS G_CDS: -3.25 Total: 9.52 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.40 Total: -59.11 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: 0.19 Total: -19.67 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.58 -8.70 -42.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043499057.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.921 kcal (2) G-P(sol) polarization free energy of solvation -33.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.278 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds