Wall clock time and date at job start Tue Mar 31 2020 05:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.39964 * 119.95204 * 2 1 4 4 C 1.35761 * 119.36338 * 179.56936 * 3 2 1 5 5 C 1.50696 * 120.42433 * 179.89171 * 4 3 2 6 6 N 1.36319 * 119.14912 * 0.62769 * 4 3 2 7 7 N 1.39899 * 132.16135 * 179.21693 * 6 4 3 8 8 C 1.30702 * 109.52087 * 180.02562 * 7 6 4 9 9 C 1.40642 * 108.72613 * 359.97438 * 8 7 6 10 10 C 1.46575 * 126.54118 * 180.02562 * 9 8 7 11 11 O 1.21718 * 120.00065 * 215.23550 * 10 9 8 12 12 N 1.34776 * 120.00187 * 35.23718 * 10 9 8 13 13 C 1.46501 * 119.99650 * 355.69676 * 12 10 9 14 14 C 1.46498 * 120.00385 * 175.70091 * 12 10 9 15 15 C 1.53947 * 113.84035 * 141.34889 * 14 12 10 16 16 N 1.47579 * 86.11655 * 90.75078 * 15 14 12 17 17 C 1.36934 * 134.49416 * 204.63929 * 16 15 14 18 18 H 1.08001 * 120.00166 * 180.02562 * 17 16 15 19 19 C 1.38815 * 120.00203 * 0.02562 * 17 16 15 20 20 N 1.31623 * 119.99519 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00113 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47394 * 60.00198 * 21 19 17 23 23 H 1.48498 * 109.46895 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.47028 * 299.99632 * 21 19 17 25 25 C 1.47582 * 91.01326 * 24.64339 * 16 15 14 26 26 C 1.36599 * 119.72862 * 359.54148 * 6 4 3 27 27 N 1.31507 * 119.95183 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.47275 * 270.02354 * 1 2 3 29 29 H 1.09002 * 109.47312 * 30.02689 * 1 2 3 30 30 H 1.09001 * 109.47130 * 150.02095 * 1 2 3 31 31 H 1.08004 * 120.31420 * 359.97171 * 3 2 1 32 32 H 1.08996 * 109.47530 * 270.74612 * 5 4 3 33 33 H 1.09003 * 109.46825 * 30.74761 * 5 4 3 34 34 H 1.08995 * 109.46733 * 150.74086 * 5 4 3 35 35 H 1.07998 * 125.63487 * 180.02562 * 8 7 6 36 36 H 1.08995 * 109.47638 * 275.28161 * 13 12 10 37 37 H 1.09000 * 109.47048 * 35.28630 * 13 12 10 38 38 H 1.09002 * 109.46731 * 155.28108 * 13 12 10 39 39 H 1.09004 * 112.94413 * 9.67100 * 14 12 10 40 40 H 1.09002 * 113.77352 * 205.05245 * 15 14 12 41 41 H 1.09005 * 113.77052 * 336.45175 * 15 14 12 42 42 H 0.97001 * 119.99699 * 180.02562 * 20 19 17 43 43 H 1.09004 * 113.76700 * 221.06009 * 25 16 15 44 44 H 1.09000 * 113.77478 * 89.66005 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2057 1.2127 0.0000 4 6 3.5632 1.1988 0.0089 5 6 4.3397 2.4903 0.0066 6 7 4.2150 0.0015 0.0046 7 7 5.5748 -0.3274 -0.0029 8 6 5.7096 -1.6274 -0.0051 9 6 4.4314 -2.2140 0.0016 10 6 4.1294 -3.6483 0.0023 11 8 3.1581 -4.0660 -0.6007 12 7 4.9271 -4.5046 0.6708 13 6 6.1473 -4.0158 1.3176 14 6 4.5740 -5.9242 0.7506 15 6 5.7816 -6.8728 0.6417 16 7 5.8557 -6.7850 2.1131 17 6 6.8540 -6.9521 3.0354 18 1 6.6435 -6.8283 4.0874 19 6 8.1366 -7.2805 2.6182 20 7 8.3932 -7.4308 1.3360 21 14 9.4982 -7.5090 3.8764 22 1 9.1322 -8.6059 4.8081 23 1 10.7636 -7.8526 3.1793 24 1 9.6814 -6.2497 4.6417 25 6 4.4217 -6.4451 2.1912 26 6 3.4971 -1.1606 0.0010 27 7 2.1635 -1.1394 0.0005 28 1 -0.3634 0.0004 1.0277 29 1 -0.3634 0.8897 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.6700 2.1506 -0.0005 32 1 4.5221 2.8029 -1.0215 33 1 3.7665 3.2597 0.5240 34 1 5.2919 2.3426 0.5160 35 1 6.6476 -2.1627 -0.0102 36 1 6.9578 -3.9863 0.5894 37 1 5.9743 -3.0135 1.7095 38 1 6.4177 -4.6840 2.1353 39 1 3.7445 -6.1932 0.0966 40 1 5.5279 -7.8667 0.2731 41 1 6.6398 -6.4349 0.1318 42 1 9.2894 -7.6607 1.0445 43 1 4.1940 -5.6656 2.9183 44 1 3.7684 -7.3133 2.2777 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001043506122.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:29 Heat of formation + Delta-G solvation = 156.427636 kcal Electronic energy + Delta-G solvation = -28180.196015 eV Core-core repulsion = 24330.585773 eV Total energy + Delta-G solvation = -3849.610242 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.60460 -39.57392 -38.45086 -37.26558 -35.25216 -33.88750 -32.43962 -32.00073 -30.41163 -28.77079 -28.06241 -27.77433 -26.02757 -24.70534 -24.25138 -23.17378 -22.32139 -21.64492 -19.82437 -18.59707 -17.92771 -17.48611 -16.75301 -16.55222 -16.08846 -15.57848 -15.07218 -14.83548 -14.56051 -14.17408 -14.06805 -13.95158 -13.70020 -13.66340 -13.49505 -13.29294 -12.81948 -12.57220 -12.50655 -12.25479 -12.23639 -12.02608 -11.52726 -11.35842 -11.27435 -11.20040 -10.87157 -10.82232 -10.58010 -10.06865 -9.95150 -9.72838 -9.61859 -9.48756 -9.35202 -8.75850 -8.03801 -7.77530 -6.83959 -5.76609 -3.09598 0.23839 0.61810 1.78127 2.22210 3.00722 3.38457 3.42020 3.44188 3.44788 3.53999 3.75264 3.81556 4.04046 4.45726 4.49941 4.76469 4.80937 4.87595 4.93333 5.04334 5.15598 5.21466 5.24176 5.26335 5.40280 5.45339 5.50002 5.59328 5.70639 5.88188 5.90455 6.12222 6.24268 6.24895 6.32300 6.38777 6.55719 6.64392 6.84799 7.07246 7.22472 7.25762 7.43495 7.52818 7.61951 7.97182 8.15290 8.82898 9.04681 9.70280 10.60497 11.39269 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.018960 B = 0.003123 C = 0.002843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.466858 B = 8962.920048 C = 9847.154347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.208 3.792 3 C -0.231 4.231 4 C 0.199 3.801 5 C -0.118 4.118 6 N -0.311 5.311 7 N -0.316 5.316 8 C 0.130 3.870 9 C -0.274 4.274 10 C 0.594 3.406 11 O -0.545 6.545 12 N -0.574 5.574 13 C 0.068 3.932 14 C 0.092 3.908 15 C 0.153 3.847 16 N -0.608 5.608 17 C -0.226 4.226 18 H 0.078 0.922 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.908 3.092 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.284 1.284 25 C 0.105 3.895 26 C 0.318 3.682 27 N -0.452 5.452 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.167 0.833 32 H 0.094 0.906 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.210 0.790 36 H 0.050 0.950 37 H 0.050 0.950 38 H 0.119 0.881 39 H 0.095 0.905 40 H 0.037 0.963 41 H 0.079 0.921 42 H 0.254 0.746 43 H 0.045 0.955 44 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.799 21.791 -3.420 25.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.045 3.955 3 C -0.255 4.255 4 C 0.082 3.918 5 C -0.175 4.175 6 N -0.081 5.081 7 N -0.138 5.138 8 C -0.051 4.051 9 C -0.290 4.290 10 C 0.382 3.618 11 O -0.423 6.423 12 N -0.304 5.304 13 C -0.074 4.074 14 C -0.013 4.013 15 C 0.027 3.973 16 N -0.335 5.335 17 C -0.353 4.353 18 H 0.096 0.904 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.739 3.261 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.211 1.211 25 C -0.022 4.022 26 C 0.088 3.912 27 N -0.165 5.165 28 H 0.109 0.891 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.184 0.816 32 H 0.112 0.888 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.226 0.774 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.137 0.863 39 H 0.113 0.887 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.064 0.936 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.497 21.645 -3.628 24.776 hybrid contribution 0.991 -0.367 0.773 1.309 sum -10.506 21.278 -2.855 23.902 Atomic orbital electron populations 1.20826 0.86860 1.04586 1.04136 1.22027 0.98077 0.87289 0.88060 1.21518 0.91552 1.01251 1.11199 1.20782 0.91983 0.86359 0.92714 1.20996 1.01068 0.90728 1.04713 1.46990 1.07793 1.05785 1.47572 1.77536 0.88694 1.15924 1.31637 1.24508 0.98776 0.90264 0.91530 1.19439 0.90563 0.93455 1.25546 1.16799 0.82486 0.83654 0.78821 1.90759 1.29005 1.78403 1.44127 1.47156 1.23923 1.07472 1.51896 1.22206 0.85251 0.99906 1.00080 1.22865 0.99877 0.80457 0.98086 1.22641 0.94050 0.94389 0.86190 1.46171 1.02822 1.81746 1.02801 1.18950 0.87056 1.41321 0.87980 0.90413 1.24750 0.97280 1.01932 0.96134 1.69814 1.20381 1.53543 1.12654 0.86264 0.81539 0.78025 0.80299 1.21319 1.21628 1.21096 1.23033 0.87881 0.96561 0.94732 1.20270 0.87745 0.86029 0.97200 1.68084 1.03813 1.28388 1.16234 0.89116 0.89699 0.89277 0.81589 0.88799 0.88716 0.89115 0.77356 0.93147 0.93166 0.86255 0.88722 0.94535 0.90262 0.93579 0.93648 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.19 36.00 0.37 -0.32 16 2 C 0.21 2.19 6.83 -82.09 -0.56 1.63 16 3 C -0.23 -1.81 9.38 -39.82 -0.37 -2.19 16 4 C 0.20 1.94 6.85 -81.49 -0.56 1.38 16 5 C -0.12 -0.69 10.08 36.00 0.36 -0.32 16 6 N -0.31 -4.37 3.86 -8.26 -0.03 -4.41 16 7 N -0.32 -4.62 12.39 30.76 0.38 -4.24 16 8 C 0.13 1.97 9.64 -17.13 -0.17 1.80 16 9 C -0.27 -4.89 5.46 -104.66 -0.57 -5.46 16 10 C 0.59 12.10 7.57 -12.90 -0.10 12.01 16 11 O -0.54 -12.58 16.54 5.17 0.09 -12.49 16 12 N -0.57 -11.47 3.09 -177.33 -0.55 -12.02 16 13 C 0.07 1.28 8.04 59.85 0.48 1.76 16 14 C 0.09 1.93 4.53 -70.15 -0.32 1.61 16 15 C 0.15 3.62 6.77 -2.98 -0.02 3.60 16 16 N -0.61 -15.09 2.26 -178.09 -0.40 -15.49 16 17 C -0.23 -6.06 9.69 -15.06 -0.15 -6.20 16 18 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 19 C 0.00 -0.11 5.50 -17.43 -0.10 -0.20 16 20 N -0.92 -26.10 11.38 55.49 0.63 -25.47 16 21 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 25 C 0.10 2.24 8.38 -2.98 -0.02 2.21 16 26 C 0.32 5.33 7.85 -155.84 -1.22 4.11 16 27 N -0.45 -7.10 10.39 -8.25 -0.09 -7.18 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.29 8.09 -51.93 -0.42 -0.13 16 30 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.17 0.55 8.06 -52.48 -0.42 0.12 16 32 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 33 H 0.09 0.27 8.09 -51.93 -0.42 -0.15 16 34 H 0.09 0.64 8.10 -51.93 -0.42 0.22 16 35 H 0.21 2.72 6.08 -52.49 -0.32 2.40 16 36 H 0.05 0.90 7.27 -51.93 -0.38 0.52 16 37 H 0.05 0.83 5.81 -51.93 -0.30 0.53 16 38 H 0.12 2.63 5.11 -51.93 -0.27 2.36 16 39 H 0.09 1.97 7.20 -51.93 -0.37 1.59 16 40 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.08 2.03 6.90 -51.93 -0.36 1.67 16 42 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 363.28 15.07 5.47 5.47 Total: -1.00 -35.55 363.28 -8.23 -43.78 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -5.76 Total: 0.13 kcal Atomic # 6 Polarization: 18.35 SS G_CDS: -2.94 Total: 15.41 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -0.06 Total: -68.81 kcal Atomic # 8 Polarization: -12.58 SS G_CDS: 0.09 Total: -12.49 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.55 -8.23 -43.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001043506122.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.208 kcal (2) G-P(sol) polarization free energy of solvation -35.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 156.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds