Wall clock time and date at job start Tue Mar 31 2020 05:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34775 * 120.00050 * 2 1 4 4 O 1.21274 * 120.00338 * 179.97438 * 3 2 1 5 5 C 1.50702 * 119.99857 * 359.97438 * 3 2 1 6 6 C 1.52997 * 109.47239 * 179.97438 * 5 3 2 7 7 H 1.08998 * 110.12774 * 306.58707 * 6 5 3 8 8 N 1.46735 * 110.01534 * 68.22552 * 6 5 3 9 9 C 1.34424 * 108.75247 * 119.54525 * 8 6 5 10 10 O 1.21551 * 124.85642 * 179.73022 * 9 8 6 11 11 C 1.47545 * 110.28700 * 359.74850 * 9 8 6 12 12 C 1.39618 * 132.34244 * 179.97438 * 11 9 8 13 13 C 1.37934 * 119.82861 * 179.97438 * 12 11 9 14 14 C 1.38383 * 120.31837 * 0.04587 * 13 12 11 15 15 C 1.38466 * 120.19159 * 359.97438 * 14 13 12 16 16 C 1.37585 * 119.95749 * 359.97438 * 15 14 13 17 17 C 1.46502 * 120.00073 * 179.97438 * 2 1 3 18 18 C 1.53944 * 113.73807 * 36.68381 * 17 2 1 19 19 N 1.47588 * 86.11501 * 222.04259 * 18 17 2 20 20 C 1.36929 * 134.49222 * 204.64029 * 19 18 17 21 21 H 1.07995 * 120.00258 * 179.97438 * 20 19 18 22 22 C 1.38815 * 120.00376 * 0.02562 * 20 19 18 23 23 N 1.31617 * 119.99795 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00358 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47287 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47169 * 119.99614 * 24 22 20 27 27 H 1.48500 * 109.47284 * 239.99891 * 24 22 20 28 28 C 1.47579 * 91.01406 * 24.63929 * 19 18 17 29 29 H 1.09000 * 109.47160 * 90.00710 * 1 2 3 30 30 H 1.09005 * 109.47004 * 209.99802 * 1 2 3 31 31 H 1.08995 * 109.47287 * 330.00275 * 1 2 3 32 32 H 1.08996 * 109.47386 * 59.99702 * 5 3 2 33 33 H 1.09005 * 109.46789 * 300.00169 * 5 3 2 34 34 H 0.97007 * 125.62435 * 299.29387 * 8 6 5 35 35 H 1.08000 * 120.08623 * 0.03206 * 12 11 9 36 36 H 1.08006 * 119.84252 * 180.02562 * 13 12 11 37 37 H 1.08000 * 119.90820 * 179.97438 * 14 13 12 38 38 H 1.08004 * 120.02541 * 180.02562 * 15 14 13 39 39 H 1.09001 * 112.94244 * 168.40934 * 17 2 1 40 40 H 1.09007 * 113.77067 * 336.34116 * 18 17 2 41 41 H 1.09003 * 113.77215 * 107.74728 * 18 17 2 42 42 H 0.96997 * 120.00454 * 179.97438 * 23 22 20 43 43 H 1.08995 * 113.77213 * 221.05940 * 28 19 18 44 44 H 1.09001 * 113.86826 * 89.67298 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3516 1.1672 0.0005 5 6 1.3853 2.4723 -0.0006 6 6 2.3795 3.6352 0.0002 7 1 3.0863 3.5239 0.8225 8 7 3.0956 3.6846 -1.2796 9 6 2.8477 4.8675 -1.8682 10 8 3.2998 5.2181 -2.9406 11 6 1.9486 5.6794 -1.0260 12 6 1.4054 6.9553 -1.1884 13 6 0.5758 7.4765 -0.2175 14 6 0.2801 6.7413 0.9170 15 6 0.8153 5.4754 1.0855 16 6 1.6431 4.9457 0.1226 17 6 2.1975 -1.2687 0.0006 18 6 1.5287 -2.3708 -0.8408 19 7 1.8682 -3.2837 0.2681 20 6 2.0738 -4.6336 0.3711 21 1 2.3189 -5.0710 1.3276 22 6 1.9681 -5.4397 -0.7541 23 7 1.6698 -4.9066 -1.9199 24 14 2.2478 -7.2812 -0.6134 25 1 2.5667 -7.6273 0.7951 26 1 1.0198 -8.0021 -1.0348 27 1 3.3799 -7.6783 -1.4886 28 6 1.8972 -2.1574 1.2212 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 0.7583 2.5302 0.8891 33 1 0.7590 2.5297 -0.8909 34 1 3.6583 2.9813 -1.6397 35 1 1.6335 7.5323 -2.0724 36 1 0.1551 8.4633 -0.3431 37 1 -0.3699 7.1560 1.6732 38 1 0.5824 4.9038 1.9717 39 1 3.2615 -1.1451 -0.2012 40 1 0.4570 -2.2281 -0.9798 41 1 2.0535 -2.5939 -1.7698 42 1 1.5963 -5.4697 -2.7062 43 1 2.7162 -2.2098 1.9385 44 1 0.9347 -1.9506 1.6890 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044078085.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:31 Heat of formation + Delta-G solvation = 34.792552 kcal Electronic energy + Delta-G solvation = -27432.575105 eV Core-core repulsion = 23545.397619 eV Total energy + Delta-G solvation = -3887.177486 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.57506 -39.87051 -38.25793 -37.83766 -36.22594 -34.59987 -32.20431 -31.77971 -30.93250 -30.42742 -27.77048 -26.76131 -25.18872 -24.88702 -24.16889 -23.01232 -21.63327 -20.70743 -19.77573 -18.56052 -17.61938 -17.17039 -17.02973 -16.80315 -16.27479 -16.20226 -15.70901 -15.17235 -14.88931 -14.81190 -14.53830 -14.02790 -13.87690 -13.82337 -13.38530 -13.17311 -12.99636 -12.78845 -12.55539 -12.27383 -12.17671 -12.00804 -11.86466 -11.59646 -11.39913 -11.37692 -10.94076 -10.77271 -10.32876 -10.13017 -10.10359 -9.70450 -9.62862 -9.58036 -9.35220 -9.11915 -8.87622 -8.27216 -6.98393 -5.85047 -3.18331 0.43154 0.88134 2.55852 2.67215 3.02424 3.11614 3.35315 3.40627 3.43116 3.49595 3.75036 4.05278 4.39581 4.42022 4.52557 4.59600 4.64381 4.87440 4.94967 5.02063 5.10498 5.14107 5.24882 5.29207 5.36954 5.43595 5.50481 5.54351 5.67120 5.78455 5.83744 5.90187 5.98312 5.99868 6.07228 6.34692 6.39720 6.49139 6.60272 6.66607 6.87548 7.11587 7.23809 7.44887 7.62770 7.89144 8.06612 8.26315 8.96228 9.62233 10.48146 11.32143 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.002327 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.559124 B =12027.747116 C =12510.722475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.596 5.596 3 C 0.511 3.489 4 O -0.548 6.548 5 C -0.147 4.147 6 C 0.187 3.813 7 H 0.113 0.887 8 N -0.705 5.705 9 C 0.557 3.443 10 O -0.530 6.530 11 C -0.154 4.154 12 C -0.048 4.048 13 C -0.127 4.127 14 C -0.089 4.089 15 C -0.100 4.100 16 C -0.078 4.078 17 C 0.089 3.911 18 C 0.157 3.843 19 N -0.606 5.606 20 C -0.224 4.224 21 H 0.083 0.917 22 C -0.007 4.007 23 N -0.920 5.920 24 Si 0.915 3.085 25 H -0.279 1.279 26 H -0.290 1.290 27 H -0.289 1.289 28 C 0.109 3.891 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.432 0.568 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.116 0.884 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.047 0.953 44 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.599 24.227 7.122 26.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.328 5.328 3 C 0.298 3.702 4 O -0.426 6.426 5 C -0.187 4.187 6 C 0.081 3.919 7 H 0.131 0.869 8 N -0.362 5.362 9 C 0.344 3.656 10 O -0.408 6.408 11 C -0.157 4.157 12 C -0.067 4.067 13 C -0.145 4.145 14 C -0.107 4.107 15 C -0.118 4.118 16 C -0.079 4.079 17 C -0.014 4.014 18 C 0.031 3.969 19 N -0.332 5.332 20 C -0.351 4.351 21 H 0.100 0.900 22 C -0.204 4.204 23 N -0.567 5.567 24 Si 0.745 3.255 25 H -0.204 1.204 26 H -0.217 1.217 27 H -0.216 1.216 28 C -0.019 4.019 29 H 0.077 0.923 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.120 0.880 34 H 0.276 0.724 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.151 0.849 39 H 0.134 0.866 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -5.730 24.066 6.453 25.566 hybrid contribution 0.005 -1.465 -0.052 1.466 sum -5.725 22.601 6.401 24.177 Atomic orbital electron populations 1.21828 0.79772 1.03066 1.02169 1.48055 1.07011 1.06275 1.71416 1.20427 0.88040 0.85251 0.76454 1.90683 1.13782 1.87390 1.50772 1.22089 0.99025 0.91916 1.05699 1.19785 0.93129 0.90664 0.88335 0.86943 1.45972 1.50457 1.18644 1.21150 1.18314 0.80470 0.82069 0.84710 1.90811 1.54257 1.74414 1.21322 1.20496 1.01770 0.96340 0.97080 1.20893 0.94002 0.92968 0.98819 1.21157 0.98717 1.00527 0.94113 1.21340 0.98213 0.93747 0.97442 1.20349 0.97109 0.95862 0.98527 1.20444 0.96999 0.95421 0.95053 1.24088 0.98067 0.79765 0.99489 1.22628 0.96572 0.83606 0.94132 1.45663 1.81080 1.02134 1.04349 1.19032 1.41050 0.80117 0.94934 0.89957 1.24817 1.01750 0.98359 0.95427 1.69816 1.53948 1.34199 0.98718 0.86010 0.77451 0.84634 0.77435 1.20379 1.21670 1.21577 1.22962 0.98088 0.87249 0.93551 0.92287 0.90143 0.91557 0.87236 0.87981 0.72405 0.84999 0.84995 0.84906 0.84917 0.86603 0.95045 0.90500 0.93533 0.93493 0.94743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.83 8.84 59.85 0.53 1.36 16 2 N -0.60 -8.60 3.09 -175.75 -0.54 -9.15 16 3 C 0.51 6.89 7.57 -10.99 -0.08 6.80 16 4 O -0.55 -9.13 14.43 5.56 0.08 -9.05 16 5 C -0.15 -1.32 3.95 -27.88 -0.11 -1.43 16 6 C 0.19 1.82 3.06 -68.90 -0.21 1.61 16 7 H 0.11 1.09 7.92 -51.93 -0.41 0.68 16 8 N -0.71 -8.59 5.73 -55.86 -0.32 -8.90 16 9 C 0.56 7.57 8.34 -12.62 -0.11 7.47 16 10 O -0.53 -9.10 18.04 5.32 0.10 -9.01 16 11 C -0.15 -1.64 6.26 -105.05 -0.66 -2.30 16 12 C -0.05 -0.41 10.10 -39.18 -0.40 -0.81 16 13 C -0.13 -0.78 10.02 -39.64 -0.40 -1.18 16 14 C -0.09 -0.48 10.05 -39.44 -0.40 -0.88 16 15 C -0.10 -0.62 10.03 -39.74 -0.40 -1.02 16 16 C -0.08 -0.67 5.67 -104.27 -0.59 -1.26 16 17 C 0.09 1.68 4.40 -70.15 -0.31 1.37 16 18 C 0.16 3.55 6.93 -2.97 -0.02 3.53 16 19 N -0.61 -15.19 3.70 -178.09 -0.66 -15.85 16 20 C -0.22 -6.18 10.70 -15.06 -0.16 -6.34 16 21 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 22 C -0.01 -0.19 5.50 -17.43 -0.10 -0.28 16 23 N -0.92 -26.90 11.38 55.49 0.63 -26.27 16 24 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 28 C 0.11 2.16 8.46 -2.98 -0.03 2.14 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.08 1.00 6.36 -51.93 -0.33 0.67 16 31 H 0.07 0.49 6.44 -51.93 -0.33 0.16 16 32 H 0.11 0.67 7.40 -51.93 -0.38 0.29 16 33 H 0.10 0.88 8.11 -51.93 -0.42 0.46 16 34 H 0.43 5.63 8.15 -40.82 -0.33 5.30 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 37 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 38 H 0.13 0.52 8.06 -52.48 -0.42 0.09 16 39 H 0.12 2.40 7.24 -51.93 -0.38 2.02 16 40 H 0.03 0.70 6.71 -51.92 -0.35 0.35 16 41 H 0.08 1.99 7.15 -51.93 -0.37 1.62 16 42 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 43 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.04 0.64 6.98 -51.93 -0.36 0.28 16 LS Contribution 364.25 15.07 5.49 5.49 Total: -1.00 -34.91 364.25 -9.43 -44.34 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -5.75 Total: 2.76 kcal Atomic # 6 Polarization: 12.20 SS G_CDS: -3.43 Total: 8.77 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: -0.89 Total: -60.17 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: 0.18 Total: -18.05 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.91 -9.43 -44.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044078085.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.137 kcal (2) G-P(sol) polarization free energy of solvation -34.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.344 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds