Wall clock time and date at job start Tue Mar 31 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38701 * 119.16751 * 2 1 4 4 C 1.39285 * 119.36372 * 179.97438 * 3 2 1 5 5 C 1.47875 * 121.08690 * 179.97438 * 4 3 2 6 6 O 1.21548 * 119.99894 * 132.05257 * 5 4 3 7 7 N 1.34771 * 120.00239 * 312.04926 * 5 4 3 8 8 C 1.46505 * 120.00026 * 4.44987 * 7 5 4 9 9 C 1.46496 * 120.00254 * 184.45174 * 7 5 4 10 10 C 1.53954 * 113.74485 * 218.74337 * 9 7 5 11 11 N 1.47813 * 86.03589 * 222.08212 * 10 9 7 12 12 C 1.36936 * 134.45265 * 204.63935 * 11 10 9 13 13 H 1.08001 * 119.99541 * 179.86779 * 12 11 10 14 14 C 1.38814 * 119.99885 * 359.86974 * 12 11 10 15 15 N 1.31617 * 120.00344 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99512 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47221 * 90.00298 * 16 14 12 18 18 H 1.48504 * 109.46930 * 209.99999 * 16 14 12 19 19 H 1.48497 * 109.47309 * 329.99845 * 16 14 12 20 20 C 1.47576 * 91.05222 * 24.54789 * 11 10 9 21 21 C 1.41270 * 117.82319 * 0.02703 * 4 3 2 22 22 C 1.41114 * 133.91138 * 180.02562 * 21 4 3 23 23 N 1.30240 * 108.58557 * 180.19881 * 22 21 4 24 24 N 1.39987 * 109.75310 * 359.62063 * 23 22 21 25 25 C 1.46505 * 125.91047 * 180.19619 * 24 23 22 26 26 C 1.37080 * 108.18353 * 0.38634 * 24 23 22 27 27 N 1.31454 * 119.16352 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47210 * 270.02315 * 1 2 3 29 29 H 1.09004 * 109.47462 * 30.02166 * 1 2 3 30 30 H 1.09001 * 109.47709 * 150.02330 * 1 2 3 31 31 H 1.08007 * 120.31366 * 359.97438 * 3 2 1 32 32 H 1.09003 * 109.46647 * 92.95437 * 8 7 5 33 33 H 1.09000 * 109.47505 * 212.95695 * 8 7 5 34 34 H 1.08994 * 109.46920 * 332.96378 * 8 7 5 35 35 H 1.09002 * 112.94563 * 350.33386 * 9 7 5 36 36 H 1.09002 * 113.76306 * 336.34656 * 10 9 7 37 37 H 1.09001 * 113.76811 * 107.73781 * 10 9 7 38 38 H 0.96995 * 119.99966 * 179.97438 * 15 14 12 39 39 H 1.09000 * 113.77216 * 221.15234 * 20 11 10 40 40 H 1.08996 * 113.77210 * 89.75221 * 20 11 10 41 41 H 1.08005 * 125.70492 * 359.94815 * 22 21 4 42 42 H 1.08995 * 109.46965 * 270.21960 * 25 24 23 43 43 H 1.08998 * 109.46824 * 30.21965 * 25 24 23 44 44 H 1.09003 * 109.46912 * 150.21785 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1830 1.2111 0.0000 4 6 3.5758 1.2159 0.0005 5 6 4.3350 2.4849 0.0000 6 8 5.2517 2.6449 0.7819 7 7 4.0105 3.4639 -0.8675 8 6 2.8456 3.3108 -1.7426 9 6 4.8226 4.6813 -0.9353 10 6 3.9984 5.9658 -1.1377 11 7 5.0498 6.3670 -2.0960 12 6 5.5054 7.5671 -2.5730 13 1 6.3132 7.5918 -3.2894 14 6 4.9289 8.7517 -2.1356 15 7 3.9441 8.7215 -1.2630 16 14 5.5509 10.3887 -2.7858 17 1 4.7892 10.7585 -4.0058 18 1 5.3644 11.4359 -1.7495 19 1 6.9934 10.2732 -3.1189 20 6 5.4127 4.9559 -2.3304 21 6 4.2394 -0.0312 0.0005 22 6 5.5966 -0.4176 0.0014 23 7 5.6579 -1.7186 -0.0035 24 7 4.3641 -2.2531 0.0010 25 6 4.0230 -3.6779 0.0017 26 6 3.4714 -1.2128 0.0002 27 7 2.1476 -1.1479 0.0005 28 1 -0.3633 0.0004 1.0277 29 1 -0.3634 0.8898 -0.5142 30 1 -0.3634 -0.8902 -0.5135 31 1 1.6345 2.1416 -0.0004 32 1 1.9723 3.7565 -1.2663 33 1 3.0363 3.8107 -2.6923 34 1 2.6614 2.2513 -1.9202 35 1 5.5524 4.7508 -0.1287 36 1 3.0255 5.7954 -1.5988 37 1 3.9456 6.5981 -0.2514 38 1 3.5416 9.5493 -0.9571 39 1 6.4870 4.7833 -2.3947 40 1 4.8562 4.4882 -3.1426 41 1 6.4430 0.2533 0.0015 42 1 3.9386 -4.0318 -1.0257 43 1 4.8039 -4.2381 0.5160 44 1 3.0728 -3.8237 0.5155 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044097884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:39 Heat of formation + Delta-G solvation = 145.144360 kcal Electronic energy + Delta-G solvation = -27840.144919 eV Core-core repulsion = 23990.045397 eV Total energy + Delta-G solvation = -3850.099521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03696 -39.96248 -38.55248 -37.63241 -34.71566 -34.05228 -32.32848 -32.10985 -31.61179 -27.95774 -27.61656 -27.15527 -26.78015 -24.88383 -24.74317 -22.99721 -22.37223 -21.49992 -19.75000 -18.62496 -17.90661 -17.48685 -17.03925 -16.80052 -16.19759 -15.95042 -15.38177 -14.83672 -14.78573 -14.52817 -14.28804 -14.02043 -13.83477 -13.75725 -13.25749 -13.16588 -12.95107 -12.69656 -12.53713 -12.38331 -12.22594 -11.94298 -11.86621 -11.60759 -11.36445 -11.23114 -10.94672 -10.75679 -10.69539 -10.30163 -10.23637 -10.07526 -9.61594 -9.48589 -9.02015 -8.85349 -8.53954 -8.27377 -6.96811 -5.83377 -3.16363 0.25039 0.93607 1.89381 2.23309 2.71267 3.04054 3.36887 3.41946 3.43858 3.49297 3.78259 4.07522 4.26621 4.42632 4.51450 4.57529 4.84128 4.93295 5.03259 5.12166 5.13235 5.19112 5.22032 5.28080 5.30262 5.35474 5.39635 5.45419 5.64030 5.67554 5.73949 5.80140 5.95446 6.03051 6.09859 6.22733 6.37143 6.50634 6.57267 6.66134 7.12918 7.18998 7.24608 7.45096 7.58701 7.63817 7.90424 8.20328 8.97731 9.63858 10.49622 11.33847 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.023655 B = 0.002703 C = 0.002513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.383783 B =10356.822449 C =11137.310679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.198 3.802 3 C -0.185 4.185 4 C 0.013 3.987 5 C 0.552 3.448 6 O -0.527 6.527 7 N -0.586 5.586 8 C 0.069 3.931 9 C 0.089 3.911 10 C 0.158 3.842 11 N -0.605 5.605 12 C -0.224 4.224 13 H 0.082 0.918 14 C -0.006 4.006 15 N -0.920 5.920 16 Si 0.914 3.086 17 H -0.288 1.288 18 H -0.289 1.289 19 H -0.280 1.280 20 C 0.109 3.891 21 C -0.194 4.194 22 C 0.097 3.903 23 N -0.242 5.242 24 N -0.395 5.395 25 C 0.115 3.885 26 C 0.316 3.684 27 N -0.497 5.497 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.152 0.848 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.119 0.881 36 H 0.033 0.967 37 H 0.078 0.922 38 H 0.255 0.745 39 H 0.048 0.952 40 H 0.036 0.964 41 H 0.200 0.800 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.328 -22.163 1.780 23.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.048 3.952 3 C -0.207 4.207 4 C -0.001 4.001 5 C 0.339 3.661 6 O -0.404 6.404 7 N -0.318 5.318 8 C -0.074 4.074 9 C -0.014 4.014 10 C 0.032 3.968 11 N -0.332 5.332 12 C -0.351 4.351 13 H 0.100 0.900 14 C -0.203 4.203 15 N -0.567 5.567 16 Si 0.744 3.256 17 H -0.216 1.216 18 H -0.215 1.215 19 H -0.205 1.205 20 C -0.018 4.018 21 C -0.205 4.205 22 C -0.099 4.099 23 N -0.055 5.055 24 N -0.186 5.186 25 C -0.026 4.026 26 C 0.076 3.924 27 N -0.214 5.214 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.099 0.901 31 H 0.170 0.830 32 H 0.081 0.919 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.137 0.863 36 H 0.051 0.949 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.217 0.783 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.451 -23.738 2.152 24.693 hybrid contribution 0.087 2.265 -0.489 2.318 sum -6.365 -21.473 1.663 22.458 Atomic orbital electron populations 1.20816 0.87589 1.04141 1.03744 1.21138 0.96769 0.86399 0.90876 1.22090 0.92936 1.00100 1.05613 1.19912 0.93553 0.92373 0.94258 1.18177 0.83632 0.82904 0.81429 1.90802 1.30122 1.80624 1.38807 1.47988 1.28946 1.17845 1.36974 1.22053 0.87905 1.01979 0.95426 1.24185 0.95417 0.82334 0.99484 1.22667 0.91067 0.88553 0.94517 1.45690 1.38491 0.99310 1.49692 1.18990 1.14020 0.81369 1.20728 0.90006 1.24803 0.98289 0.97709 0.99487 1.69803 1.26473 1.26326 1.34091 0.86086 0.78262 0.83312 0.77891 1.21559 1.21547 1.20528 1.22971 0.98246 0.86610 0.94019 1.19233 0.94883 0.93109 1.13248 1.23926 0.96565 0.91977 0.97386 1.76927 0.98656 1.10715 1.19219 1.48308 1.01066 1.05317 1.63866 1.21787 1.02356 0.75231 1.03213 1.18872 0.88807 0.87305 0.97445 1.66245 1.06237 1.30260 1.18624 0.89693 0.89705 0.90092 0.83049 0.91860 0.90184 0.91144 0.86326 0.94912 0.90365 0.93499 0.93330 0.94607 0.78293 0.91095 0.89357 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.14 36.00 0.37 -0.29 16 2 C 0.20 2.00 6.78 -82.58 -0.56 1.44 16 3 C -0.19 -2.00 7.30 -39.02 -0.28 -2.28 16 4 C 0.01 0.18 4.97 -104.41 -0.52 -0.34 16 5 C 0.55 8.82 7.22 -12.32 -0.09 8.73 16 6 O -0.53 -10.06 16.40 5.32 0.09 -9.97 16 7 N -0.59 -9.13 3.09 -176.84 -0.55 -9.68 16 8 C 0.07 0.84 7.65 59.85 0.46 1.30 16 9 C 0.09 1.70 4.41 -70.14 -0.31 1.39 16 10 C 0.16 3.56 7.00 -2.83 -0.02 3.54 16 11 N -0.61 -15.13 3.70 -177.86 -0.66 -15.79 16 12 C -0.22 -6.15 10.70 -15.06 -0.16 -6.31 16 13 H 0.08 2.17 7.83 -52.49 -0.41 1.76 16 14 C -0.01 -0.17 5.50 -17.43 -0.10 -0.27 16 15 N -0.92 -26.66 11.39 55.49 0.63 -26.03 16 16 Si 0.91 21.79 29.55 -169.99 -5.02 16.76 16 17 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 C 0.11 2.18 8.47 -2.97 -0.03 2.16 16 21 C -0.19 -2.72 6.00 -106.64 -0.64 -3.36 16 22 C 0.10 1.31 11.79 -17.14 -0.20 1.11 16 23 N -0.24 -3.21 12.44 30.79 0.38 -2.83 16 24 N -0.39 -4.83 4.07 -67.19 -0.27 -5.10 16 25 C 0.12 0.89 11.48 59.85 0.69 1.58 16 26 C 0.32 4.20 8.00 -156.06 -1.25 2.95 16 27 N -0.50 -6.00 10.25 -8.59 -0.09 -6.09 16 28 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.15 1.33 6.55 -52.48 -0.34 0.99 16 32 H 0.06 0.68 7.54 -51.93 -0.39 0.29 16 33 H 0.08 1.04 6.48 -51.93 -0.34 0.70 16 34 H 0.07 0.72 5.64 -51.93 -0.29 0.43 16 35 H 0.12 2.47 7.20 -51.93 -0.37 2.09 16 36 H 0.03 0.72 6.87 -51.93 -0.36 0.36 16 37 H 0.08 1.99 7.17 -51.93 -0.37 1.62 16 38 H 0.25 7.16 8.31 -40.82 -0.34 6.83 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.04 0.68 6.81 -51.93 -0.35 0.32 16 41 H 0.20 2.41 8.06 -52.48 -0.42 1.99 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -34.29 365.02 -8.38 -42.67 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -5.74 Total: -0.79 kcal Atomic # 6 Polarization: 13.98 SS G_CDS: -2.65 Total: 11.34 kcal Atomic # 7 Polarization: -64.96 SS G_CDS: -0.55 Total: -65.51 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -34.29 -8.38 -42.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044097884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.816 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 145.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds