Wall clock time and date at job start Tue Mar 31 2020 05:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00029 * 2 1 4 4 O 1.21280 * 120.00333 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00036 * 0.02562 * 3 2 1 6 6 N 1.46498 * 109.47290 * 179.97438 * 5 3 2 7 7 C 1.46736 * 125.62289 * 90.00090 * 6 5 3 8 8 C 1.50821 * 106.25373 * 179.97438 * 7 6 5 9 9 C 1.37579 * 133.24535 * 179.97438 * 8 7 6 10 10 C 1.38463 * 119.96325 * 180.02562 * 9 8 7 11 11 C 1.38386 * 120.18585 * 359.97438 * 10 9 8 12 12 C 1.37939 * 120.32213 * 0.02801 * 11 10 9 13 13 C 1.39622 * 119.82679 * 359.94655 * 12 11 10 14 14 C 1.34415 * 125.62665 * 269.97461 * 6 5 3 15 15 O 1.21553 * 124.85660 * 0.02562 * 14 6 5 16 16 C 1.46501 * 120.00095 * 180.02562 * 2 1 3 17 17 C 1.53948 * 113.74021 * 38.73753 * 16 2 1 18 18 N 1.47812 * 86.03602 * 222.08324 * 17 16 2 19 19 C 1.36938 * 134.45479 * 204.63844 * 18 17 16 20 20 H 1.07996 * 119.99702 * 179.86941 * 19 18 17 21 21 C 1.38805 * 120.00032 * 359.87601 * 19 18 17 22 22 N 1.31620 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00027 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46683 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47119 * 119.99836 * 23 21 19 26 26 H 1.48493 * 109.47112 * 239.99836 * 23 21 19 27 27 C 1.47579 * 91.04678 * 24.55258 * 18 17 16 28 28 H 1.09000 * 109.47500 * 89.99511 * 1 2 3 29 29 H 1.08997 * 109.46977 * 210.00026 * 1 2 3 30 30 H 1.09001 * 109.47008 * 329.99624 * 1 2 3 31 31 H 1.09004 * 109.47226 * 59.99777 * 5 3 2 32 32 H 1.09007 * 109.47273 * 300.00093 * 5 3 2 33 33 H 1.08998 * 110.09656 * 299.17785 * 7 6 5 34 34 H 1.08998 * 110.09849 * 60.78284 * 7 6 5 35 35 H 1.08006 * 120.01741 * 0.04797 * 9 8 7 36 36 H 1.07996 * 119.91446 * 179.97438 * 10 9 8 37 37 H 1.08001 * 119.84391 * 179.97438 * 11 10 9 38 38 H 1.08004 * 120.09146 * 179.97438 * 12 11 10 39 39 H 1.08996 * 112.94109 * 170.32925 * 16 2 1 40 40 H 1.09001 * 113.76927 * 336.35246 * 17 16 2 41 41 H 1.09007 * 113.76980 * 107.74354 * 17 16 2 42 42 H 0.97010 * 119.99961 * 180.02562 * 22 21 19 43 43 H 1.09006 * 113.76056 * 221.15026 * 27 18 17 44 44 H 1.08999 * 113.77140 * 89.75641 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3374 3.5858 0.0011 7 6 2.8927 4.2360 -1.1914 8 6 3.8168 5.3177 -0.6907 9 6 4.6108 6.2464 -1.3231 10 6 5.3682 7.1323 -0.5757 11 6 5.3288 7.0870 0.8069 12 6 4.5362 6.1599 1.4510 13 6 3.7692 5.2635 0.7042 14 6 2.8458 4.1808 1.0939 15 8 2.5819 3.8716 2.2395 16 6 2.1975 -1.2687 -0.0006 17 6 1.5555 -2.3547 -0.8829 18 7 1.8611 -3.2880 0.2218 19 6 2.0638 -4.6396 0.3070 20 1 2.2809 -5.0939 1.2625 21 6 1.9905 -5.4257 -0.8346 22 7 1.7256 -4.8722 -1.9990 23 14 2.2677 -7.2695 -0.7185 24 1 2.5472 -7.6400 0.6921 25 1 1.0527 -7.9832 -1.1869 26 1 3.4242 -7.6506 -1.5683 27 6 1.8620 -2.1786 1.1950 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7590 2.5299 0.8908 32 1 0.7583 2.5303 -0.8892 33 1 3.4502 3.5130 -1.7868 34 1 2.0915 4.6739 -1.7867 35 1 4.6429 6.2846 -2.4020 36 1 5.9914 7.8607 -1.0729 37 1 5.9221 7.7804 1.3844 38 1 4.5086 6.1276 2.5302 39 1 3.2669 -1.1418 -0.1691 40 1 0.4887 -2.2089 -1.0526 41 1 2.1090 -2.5603 -1.7992 42 1 1.6739 -5.4216 -2.7968 43 1 2.6600 -2.2439 1.9348 44 1 0.8855 -1.9810 1.6371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044202621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:59 Heat of formation + Delta-G solvation = 49.604530 kcal Electronic energy + Delta-G solvation = -27396.678278 eV Core-core repulsion = 23510.143088 eV Total energy + Delta-G solvation = -3886.535190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.39131 -39.78553 -38.33361 -37.54733 -36.12749 -34.51814 -32.40165 -31.86316 -31.39894 -28.58146 -27.42509 -26.90885 -26.60036 -24.83716 -23.85931 -22.71602 -21.98424 -20.59274 -19.60666 -18.51270 -17.44092 -17.24753 -16.90856 -16.80414 -16.31265 -15.87056 -15.47003 -15.27869 -14.80355 -14.69943 -14.47861 -13.94856 -13.77032 -13.50311 -13.45879 -13.40876 -13.15958 -12.67741 -12.49957 -12.31327 -12.18987 -12.02484 -11.81962 -11.54413 -11.38862 -11.33163 -10.91054 -10.73719 -10.28447 -10.08818 -10.06916 -9.94843 -9.58643 -9.36008 -9.19583 -8.84205 -8.78581 -8.19087 -6.94017 -5.81702 -3.14336 0.50822 0.96284 2.38829 2.65040 2.75774 3.28949 3.37947 3.43275 3.45451 3.57386 3.80648 4.15964 4.43206 4.54502 4.58126 4.64354 4.83928 4.92699 4.97522 5.07402 5.13955 5.16833 5.18746 5.26872 5.39867 5.42377 5.47356 5.59772 5.70923 5.80543 5.83742 5.95136 6.04723 6.05259 6.12124 6.27742 6.42584 6.47781 6.56650 6.73360 6.76959 7.15683 7.29834 7.48304 7.68904 7.92508 7.97257 8.37014 8.99877 9.65752 10.52461 11.35703 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026995 B = 0.002278 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.968505 B =12286.127029 C =12451.500008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.598 5.598 3 C 0.491 3.509 4 O -0.534 6.534 5 C 0.119 3.881 6 N -0.598 5.598 7 C 0.142 3.858 8 C -0.078 4.078 9 C -0.104 4.104 10 C -0.090 4.090 11 C -0.129 4.129 12 C -0.047 4.047 13 C -0.152 4.152 14 C 0.565 3.435 15 O -0.522 6.522 16 C 0.091 3.909 17 C 0.158 3.842 18 N -0.607 5.607 19 C -0.221 4.221 20 H 0.083 0.917 21 C -0.008 4.008 22 N -0.921 5.921 23 Si 0.914 3.086 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.289 1.289 27 C 0.108 3.892 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.114 0.886 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.132 0.868 39 H 0.115 0.885 40 H 0.032 0.968 41 H 0.076 0.924 42 H 0.254 0.746 43 H 0.047 0.953 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 26.525 -0.708 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.331 5.331 3 C 0.276 3.724 4 O -0.411 6.411 5 C -0.006 4.006 6 N -0.330 5.330 7 C 0.020 3.980 8 C -0.079 4.079 9 C -0.122 4.122 10 C -0.108 4.108 11 C -0.147 4.147 12 C -0.065 4.065 13 C -0.155 4.155 14 C 0.354 3.646 15 O -0.399 6.399 16 C -0.013 4.013 17 C 0.032 3.968 18 N -0.333 5.333 19 C -0.349 4.349 20 H 0.100 0.900 21 C -0.204 4.204 22 N -0.568 5.568 23 Si 0.745 3.255 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.216 1.216 27 C -0.019 4.019 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.119 0.881 34 H 0.115 0.885 35 H 0.150 0.850 36 H 0.150 0.850 37 H 0.150 0.850 38 H 0.150 0.850 39 H 0.132 0.868 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 0.433 25.902 -0.215 25.907 hybrid contribution -0.066 -1.205 -0.058 1.208 sum 0.367 24.697 -0.273 24.702 Atomic orbital electron populations 1.21843 0.79777 1.03238 1.02098 1.48061 1.06954 1.06125 1.71967 1.21034 0.88628 0.85659 0.77052 1.90701 1.13773 1.87113 1.49492 1.21289 0.90376 0.83204 1.05749 1.47349 1.45413 1.33022 1.07227 1.20506 0.96172 0.93265 0.88096 1.20468 0.96940 0.96006 0.94464 1.20305 0.96606 0.94953 1.00340 1.21319 0.97585 0.97864 0.94028 1.21132 0.99645 0.99175 0.94789 1.20885 0.92999 0.92257 1.00410 1.20391 1.01197 0.98993 0.94911 1.18218 0.80091 0.81805 0.84517 1.90782 1.61906 1.67347 1.19873 1.24052 0.98026 0.79681 0.99519 1.22657 0.96843 0.83444 0.93847 1.45720 1.81957 1.02227 1.03440 1.19051 1.41244 0.80180 0.94386 0.89971 1.24805 1.01962 0.98328 0.95347 1.69825 1.54775 1.34211 0.98029 0.86007 0.77415 0.84681 0.77432 1.20386 1.21693 1.21615 1.22972 0.98122 0.87244 0.93564 0.92130 0.90035 0.91659 0.86671 0.86857 0.88125 0.88452 0.85029 0.84997 0.85019 0.85021 0.86756 0.94993 0.90544 0.93611 0.93478 0.94584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.87 8.83 59.85 0.53 1.40 16 2 N -0.60 -9.55 3.09 -175.75 -0.54 -10.09 16 3 C 0.49 7.87 7.74 -10.99 -0.09 7.78 16 4 O -0.53 -10.84 15.91 5.56 0.09 -10.75 16 5 C 0.12 1.35 5.09 -5.19 -0.03 1.33 16 6 N -0.60 -7.47 2.45 -177.51 -0.44 -7.91 16 7 C 0.14 1.32 7.38 -5.01 -0.04 1.28 16 8 C -0.08 -0.75 6.38 -104.27 -0.66 -1.42 16 9 C -0.10 -0.76 10.03 -39.74 -0.40 -1.16 16 10 C -0.09 -0.59 10.05 -39.44 -0.40 -0.98 16 11 C -0.13 -0.96 10.02 -39.64 -0.40 -1.36 16 12 C -0.05 -0.47 10.10 -39.17 -0.40 -0.87 16 13 C -0.15 -1.85 6.26 -105.05 -0.66 -2.51 16 14 C 0.56 8.47 7.97 -12.63 -0.10 8.37 16 15 O -0.52 -9.64 17.71 5.32 0.09 -9.54 16 16 C 0.09 1.83 4.40 -70.15 -0.31 1.52 16 17 C 0.16 3.68 6.97 -2.84 -0.02 3.66 16 18 N -0.61 -15.74 3.70 -177.88 -0.66 -16.40 16 19 C -0.22 -6.25 10.70 -15.06 -0.16 -6.42 16 20 H 0.08 2.25 7.83 -52.49 -0.41 1.84 16 21 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 22 N -0.92 -27.19 11.39 55.49 0.63 -26.56 16 23 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.11 2.31 8.45 -2.97 -0.03 2.28 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 1.08 6.35 -51.93 -0.33 0.75 16 30 H 0.06 0.56 6.44 -51.93 -0.33 0.22 16 31 H 0.12 1.22 7.26 -51.93 -0.38 0.85 16 32 H 0.11 0.84 8.11 -51.92 -0.42 0.42 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.13 0.62 8.06 -52.48 -0.42 0.20 16 36 H 0.13 0.50 8.06 -52.49 -0.42 0.07 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 39 H 0.11 2.55 7.22 -51.93 -0.37 2.18 16 40 H 0.03 0.72 6.83 -51.93 -0.35 0.37 16 41 H 0.08 2.00 7.17 -51.93 -0.37 1.63 16 42 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 44 H 0.04 0.72 6.84 -51.93 -0.36 0.36 16 LS Contribution 368.17 15.07 5.55 5.55 Total: -1.00 -37.71 368.17 -9.39 -47.10 By element: Atomic # 1 Polarization: 4.69 SS G_CDS: -5.85 Total: -1.15 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: -3.24 Total: 12.59 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -1.01 Total: -60.96 kcal Atomic # 8 Polarization: -20.48 SS G_CDS: 0.18 Total: -20.30 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.71 -9.39 -47.10 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044202621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.700 kcal (2) G-P(sol) polarization free energy of solvation -37.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.096 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds