Wall clock time and date at job start Tue Mar 31 2020 05:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34777 * 120.00029 * 2 1 4 4 O 1.21280 * 120.00333 * 180.02562 * 3 2 1 5 5 C 1.50699 * 120.00036 * 0.02562 * 3 2 1 6 6 N 1.46498 * 109.47290 * 179.97438 * 5 3 2 7 7 C 1.46736 * 125.62289 * 90.00090 * 6 5 3 8 8 C 1.50821 * 106.25373 * 179.97438 * 7 6 5 9 9 C 1.37579 * 133.24535 * 179.97438 * 8 7 6 10 10 C 1.38463 * 119.96325 * 180.02562 * 9 8 7 11 11 C 1.38386 * 120.18585 * 359.97438 * 10 9 8 12 12 C 1.37939 * 120.32213 * 0.02801 * 11 10 9 13 13 C 1.39622 * 119.82679 * 359.94655 * 12 11 10 14 14 C 1.34415 * 125.62665 * 269.97461 * 6 5 3 15 15 O 1.21553 * 124.85660 * 0.02562 * 14 6 5 16 16 C 1.46501 * 120.00095 * 180.02562 * 2 1 3 17 17 C 1.53948 * 113.74021 * 38.73753 * 16 2 1 18 18 N 1.47812 * 86.03602 * 222.08324 * 17 16 2 19 19 C 1.36938 * 134.45479 * 204.63844 * 18 17 16 20 20 H 1.07996 * 119.99702 * 179.86941 * 19 18 17 21 21 C 1.38805 * 120.00032 * 359.87601 * 19 18 17 22 22 N 1.31620 * 120.00109 * 359.97438 * 21 19 18 23 23 Si 1.86807 * 120.00027 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46683 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47119 * 119.99836 * 23 21 19 26 26 H 1.48493 * 109.47112 * 239.99836 * 23 21 19 27 27 C 1.47579 * 91.04678 * 24.55258 * 18 17 16 28 28 H 1.09000 * 109.47500 * 89.99511 * 1 2 3 29 29 H 1.08997 * 109.46977 * 210.00026 * 1 2 3 30 30 H 1.09001 * 109.47008 * 329.99624 * 1 2 3 31 31 H 1.09004 * 109.47226 * 59.99777 * 5 3 2 32 32 H 1.09007 * 109.47273 * 300.00093 * 5 3 2 33 33 H 1.08998 * 110.09656 * 299.17785 * 7 6 5 34 34 H 1.08998 * 110.09849 * 60.78284 * 7 6 5 35 35 H 1.08006 * 120.01741 * 0.04797 * 9 8 7 36 36 H 1.07996 * 119.91446 * 179.97438 * 10 9 8 37 37 H 1.08001 * 119.84391 * 179.97438 * 11 10 9 38 38 H 1.08004 * 120.09146 * 179.97438 * 12 11 10 39 39 H 1.08996 * 112.94109 * 170.32925 * 16 2 1 40 40 H 1.09001 * 113.76927 * 336.35246 * 17 16 2 41 41 H 1.09007 * 113.76980 * 107.74354 * 17 16 2 42 42 H 0.97010 * 119.99961 * 180.02562 * 22 21 19 43 43 H 1.09006 * 113.76056 * 221.15026 * 27 18 17 44 44 H 1.08999 * 113.77140 * 89.75641 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1673 -0.0005 5 6 1.3854 2.4723 0.0006 6 7 2.3374 3.5858 0.0011 7 6 2.8927 4.2360 -1.1914 8 6 3.8168 5.3177 -0.6907 9 6 4.6108 6.2464 -1.3231 10 6 5.3682 7.1323 -0.5757 11 6 5.3288 7.0870 0.8069 12 6 4.5362 6.1599 1.4510 13 6 3.7692 5.2635 0.7042 14 6 2.8458 4.1808 1.0939 15 8 2.5819 3.8716 2.2395 16 6 2.1975 -1.2687 -0.0006 17 6 1.5555 -2.3547 -0.8829 18 7 1.8611 -3.2880 0.2218 19 6 2.0638 -4.6396 0.3070 20 1 2.2809 -5.0939 1.2625 21 6 1.9905 -5.4257 -0.8346 22 7 1.7256 -4.8722 -1.9990 23 14 2.2677 -7.2695 -0.7185 24 1 2.5472 -7.6400 0.6921 25 1 1.0527 -7.9832 -1.1869 26 1 3.4242 -7.6506 -1.5683 27 6 1.8620 -2.1786 1.1950 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 0.7590 2.5299 0.8908 32 1 0.7583 2.5303 -0.8892 33 1 3.4502 3.5130 -1.7868 34 1 2.0915 4.6739 -1.7867 35 1 4.6429 6.2846 -2.4020 36 1 5.9914 7.8607 -1.0729 37 1 5.9221 7.7804 1.3844 38 1 4.5086 6.1276 2.5302 39 1 3.2669 -1.1418 -0.1691 40 1 0.4887 -2.2089 -1.0526 41 1 2.1090 -2.5603 -1.7992 42 1 1.6739 -5.4216 -2.7968 43 1 2.6600 -2.2439 1.9348 44 1 0.8855 -1.9810 1.6371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044202621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:58 Heat of formation + Delta-G solvation = 24.001989 kcal Electronic energy + Delta-G solvation = -27397.788488 eV Core-core repulsion = 23510.143088 eV Total energy + Delta-G solvation = -3887.645400 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.27308 -41.14053 -39.44636 -38.94161 -37.10973 -35.98462 -34.11376 -33.01621 -32.05300 -30.01239 -28.74652 -27.87015 -27.69849 -26.67040 -25.27195 -23.92363 -22.65690 -21.80930 -20.84483 -19.95785 -18.93224 -18.49375 -18.05774 -17.90545 -17.42738 -16.97428 -16.74317 -16.51472 -16.36114 -15.75248 -15.53841 -15.23631 -14.88392 -14.71561 -14.55369 -14.41143 -14.04689 -13.90144 -13.69163 -13.43941 -13.33432 -13.22784 -13.14697 -13.01939 -12.84591 -12.74940 -12.60598 -12.09917 -12.02706 -11.95964 -11.59259 -11.26197 -11.07795 -10.92205 -10.17405 -9.90486 -9.66177 -9.59930 -8.99940 -7.96472 -5.30817 -0.22539 0.34923 1.41552 1.45090 1.46058 1.51077 1.55892 1.78895 2.09327 2.46143 2.82199 3.09673 3.22014 3.35187 3.39712 3.51801 3.78295 3.92478 4.05902 4.16783 4.18465 4.23250 4.33948 4.35360 4.39810 4.44955 4.51603 4.53375 4.64418 4.72885 4.78559 4.80094 4.95793 4.99928 5.09481 5.15247 5.19372 5.38063 5.42766 5.44677 5.49436 5.65405 5.81489 5.85793 5.92666 6.39897 6.86100 6.93509 7.10338 7.53120 8.46547 9.20788 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.026995 B = 0.002278 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.968505 B =12286.127029 C =12451.500008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.597 5.597 3 C 0.486 3.514 4 O -0.586 6.586 5 C 0.124 3.876 6 N -0.599 5.599 7 C 0.138 3.862 8 C -0.081 4.081 9 C -0.102 4.102 10 C -0.079 4.079 11 C -0.129 4.129 12 C -0.066 4.066 13 C -0.194 4.194 14 C 0.548 3.452 15 O -0.578 6.578 16 C 0.115 3.885 17 C 0.167 3.833 18 N -0.638 5.638 19 C -0.237 4.237 20 H 0.083 0.917 21 C -0.064 4.064 22 N -0.951 5.951 23 Si 0.983 3.017 24 H -0.267 1.267 25 H -0.287 1.287 26 H -0.291 1.291 27 C 0.112 3.888 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.127 0.873 32 H 0.165 0.835 33 H 0.097 0.903 34 H 0.140 0.860 35 H 0.164 0.836 36 H 0.169 0.831 37 H 0.159 0.841 38 H 0.123 0.877 39 H 0.086 0.914 40 H 0.044 0.956 41 H 0.040 0.960 42 H 0.251 0.749 43 H 0.042 0.958 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.635 28.747 -1.969 28.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 N -0.329 5.329 3 C 0.274 3.726 4 O -0.466 6.466 5 C -0.001 4.001 6 N -0.329 5.329 7 C 0.017 3.983 8 C -0.082 4.082 9 C -0.120 4.120 10 C -0.097 4.097 11 C -0.146 4.146 12 C -0.085 4.085 13 C -0.197 4.197 14 C 0.339 3.661 15 O -0.459 6.459 16 C 0.010 3.990 17 C 0.041 3.959 18 N -0.365 5.365 19 C -0.365 4.365 20 H 0.101 0.899 21 C -0.257 4.257 22 N -0.600 5.600 23 Si 0.810 3.190 24 H -0.191 1.191 25 H -0.214 1.214 26 H -0.218 1.218 27 C -0.014 4.014 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.144 0.856 32 H 0.183 0.817 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.182 0.818 36 H 0.187 0.813 37 H 0.176 0.824 38 H 0.141 0.859 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.231 28.163 -1.491 28.204 hybrid contribution 0.187 -1.779 0.321 1.818 sum -0.044 26.384 -1.171 26.410 Atomic orbital electron populations 1.22157 0.76768 1.04674 1.03881 1.48033 1.08623 1.04577 1.71697 1.21940 0.88280 0.86913 0.75435 1.90681 1.16286 1.87886 1.51706 1.21504 0.89872 0.80046 1.08664 1.47580 1.44976 1.32597 1.07764 1.20786 0.97455 0.93034 0.87015 1.20697 0.97524 0.96717 0.93310 1.20747 0.95365 0.93852 1.02067 1.21829 0.96674 0.97591 0.93589 1.21477 0.98836 0.98529 0.95777 1.21062 0.93944 0.93168 1.00343 1.20431 1.02763 0.99852 0.96632 1.18872 0.80279 0.82568 0.84356 1.90721 1.64010 1.69305 1.21875 1.23248 0.96710 0.81422 0.97662 1.22507 0.97014 0.84115 0.92309 1.46037 1.82409 1.02437 1.05629 1.19402 1.40844 0.81694 0.94597 0.89897 1.25658 1.02273 1.02751 0.95048 1.69997 1.55966 1.35539 0.98471 0.84956 0.76969 0.79266 0.77780 1.19130 1.21386 1.21833 1.23073 0.99074 0.85898 0.93347 0.90164 0.91307 0.87542 0.85562 0.81720 0.88506 0.84296 0.81823 0.81312 0.82388 0.85894 0.89575 0.93791 0.94175 0.93990 0.93927 0.92083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.41 8.83 127.77 1.13 2.53 16 2 N -0.60 -18.58 3.09 -828.34 -2.56 -21.14 16 3 C 0.49 15.33 7.74 87.66 0.68 16.00 16 4 O -0.59 -24.47 15.91 -3.03 -0.05 -24.52 16 5 C 0.12 2.54 5.09 85.63 0.44 2.98 16 6 N -0.60 -14.41 2.45 -834.01 -2.05 -16.46 16 7 C 0.14 2.28 7.38 85.63 0.63 2.91 16 8 C -0.08 -1.45 6.38 -19.63 -0.13 -1.58 16 9 C -0.10 -1.16 10.03 22.17 0.22 -0.93 16 10 C -0.08 -0.75 10.05 22.36 0.22 -0.53 16 11 C -0.13 -1.65 10.02 22.23 0.22 -1.43 16 12 C -0.07 -1.36 10.10 22.53 0.23 -1.14 16 13 C -0.19 -4.79 6.26 -20.14 -0.13 -4.92 16 14 C 0.55 16.98 7.97 86.76 0.69 17.67 16 15 O -0.58 -22.58 17.71 -3.88 -0.07 -22.65 16 16 C 0.12 4.74 4.40 46.75 0.21 4.95 16 17 C 0.17 7.92 6.97 86.44 0.60 8.53 16 18 N -0.64 -33.77 3.70 -716.70 -2.65 -36.42 16 19 C -0.24 -13.64 10.70 84.03 0.90 -12.74 16 20 H 0.08 4.60 7.83 -2.91 -0.02 4.58 16 21 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 22 N -0.95 -57.36 11.39 21.65 0.25 -57.12 16 23 Si 0.98 46.16 29.55 68.60 2.03 48.18 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 26 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 27 C 0.11 4.84 8.45 86.48 0.73 5.57 16 28 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.07 1.67 6.35 -2.39 -0.02 1.66 16 30 H 0.11 1.40 6.44 -2.39 -0.02 1.38 16 31 H 0.13 2.39 7.26 -2.38 -0.02 2.37 16 32 H 0.17 1.68 8.11 -2.38 -0.02 1.66 16 33 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.14 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.16 0.77 8.06 -2.91 -0.02 0.75 16 36 H 0.17 0.38 8.06 -2.91 -0.02 0.36 16 37 H 0.16 1.11 8.06 -2.91 -0.02 1.08 16 38 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 39 H 0.09 4.06 7.22 -2.39 -0.02 4.04 16 40 H 0.04 1.98 6.83 -2.39 -0.02 1.96 16 41 H 0.04 2.19 7.17 -2.38 -0.02 2.17 16 42 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 43 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.06 2.36 6.84 -2.39 -0.02 2.35 16 Total: -1.00 -88.49 368.17 3.03 -85.46 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 1.02 Total: 10.02 kcal Atomic # 6 Polarization: 27.53 SS G_CDS: 7.12 Total: 34.65 kcal Atomic # 7 Polarization: -124.12 SS G_CDS: -7.02 Total: -131.14 kcal Atomic # 8 Polarization: -47.06 SS G_CDS: -0.12 Total: -47.17 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -88.49 3.03 -85.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044202621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.459 kcal (2) G-P(sol) polarization free energy of solvation -88.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds