Wall clock time and date at job start Tue Mar 31 2020 05:42:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38505 * 125.48291 * 2 1 4 4 C 1.39063 * 107.67070 * 180.02562 * 3 2 1 5 5 N 1.33700 * 132.55587 * 180.02562 * 4 3 2 6 6 C 1.31137 * 121.18768 * 179.97438 * 5 4 3 7 7 C 1.50699 * 119.77294 * 180.02562 * 6 5 4 8 8 C 1.40136 * 120.46096 * 0.02562 * 6 5 4 9 9 C 1.36883 * 119.25992 * 359.97438 * 8 6 5 10 10 C 1.47504 * 120.61435 * 179.97438 * 9 8 6 11 11 O 1.21584 * 120.00429 * 202.64603 * 10 9 8 12 12 N 1.34786 * 119.99817 * 22.64766 * 10 9 8 13 13 C 1.46498 * 119.99816 * 5.22260 * 12 10 9 14 14 C 1.46492 * 119.99750 * 185.22933 * 12 10 9 15 15 C 1.53500 * 114.20602 * 119.99966 * 14 12 10 16 16 N 1.47067 * 87.98586 * 87.71395 * 15 14 12 17 17 C 1.36936 * 136.05965 * 207.08160 * 16 15 14 18 18 H 1.07997 * 119.99526 * 354.90795 * 17 16 15 19 19 C 1.38807 * 119.99995 * 174.90590 * 17 16 15 20 20 N 1.31627 * 119.99642 * 184.05013 * 19 17 16 21 21 Si 1.86796 * 120.00118 * 4.05200 * 19 17 16 22 22 H 1.48507 * 109.46792 * 174.54417 * 21 19 17 23 23 H 1.48498 * 109.47232 * 294.54185 * 21 19 17 24 24 H 1.48492 * 109.47370 * 54.54564 * 21 19 17 25 25 C 1.47067 * 87.88485 * 27.34479 * 16 15 14 26 26 N 1.37285 * 106.80672 * 0.22871 * 4 3 2 27 27 N 1.31530 * 125.48113 * 180.02562 * 2 1 3 28 28 H 1.08997 * 109.47213 * 90.00325 * 1 2 3 29 29 H 1.09009 * 109.47056 * 209.99848 * 1 2 3 30 30 H 1.08999 * 109.47365 * 329.99799 * 1 2 3 31 31 H 1.08001 * 126.16319 * 0.02562 * 3 2 1 32 32 H 1.09000 * 109.46794 * 270.02381 * 7 6 5 33 33 H 1.09000 * 109.47199 * 30.01784 * 7 6 5 34 34 H 1.09000 * 109.47372 * 150.02474 * 7 6 5 35 35 H 1.08003 * 120.37401 * 179.97438 * 8 6 5 36 36 H 1.08991 * 109.47228 * 264.22152 * 13 12 10 37 37 H 1.09001 * 109.47293 * 24.22514 * 13 12 10 38 38 H 1.09002 * 109.46562 * 144.21910 * 13 12 10 39 39 H 1.09001 * 113.28661 * 346.92778 * 14 12 10 40 40 H 1.08997 * 113.46859 * 332.93257 * 15 14 12 41 41 H 1.09004 * 113.46239 * 202.49197 * 15 14 12 42 42 H 0.96992 * 119.99895 * 5.00818 * 20 19 17 43 43 H 1.08996 * 113.47415 * 87.43542 * 25 16 15 44 44 H 1.09003 * 113.46567 * 217.87988 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.1278 0.0000 4 6 3.6349 0.7024 -0.0006 5 7 4.7970 1.3635 -0.0004 6 6 5.9420 0.7241 -0.0006 7 6 7.2331 1.5013 0.0002 8 6 5.9733 -0.6769 -0.0016 9 6 4.7944 -1.3725 -0.0018 10 6 4.7925 -2.8475 -0.0033 11 8 3.8198 -3.4538 -0.4089 12 7 5.8691 -3.5233 0.4450 13 6 6.9943 -2.7973 1.0393 14 6 5.9141 -4.9835 0.3377 15 6 7.0822 -5.5171 -0.5032 16 7 7.8992 -5.5069 0.7196 17 6 9.2312 -5.3885 1.0146 18 1 9.9593 -5.3500 0.2179 19 6 9.6455 -5.3179 2.3375 20 7 10.9165 -5.1240 2.6196 21 14 8.3993 -5.4980 3.7174 22 1 9.1063 -5.5179 5.0232 23 1 7.4543 -4.3530 3.6835 24 1 7.6469 -6.7662 3.5425 25 6 6.6569 -5.6865 1.4859 26 7 3.6108 -0.6702 -0.0062 27 7 2.2704 -1.0711 -0.0005 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3634 -0.8901 0.5138 30 1 -0.3634 0.8899 0.5139 31 1 1.9708 2.1529 0.0004 32 1 7.5443 1.6897 -1.0273 33 1 7.0854 2.4507 0.5149 34 1 8.0034 0.9257 0.5134 35 1 6.9171 -1.2020 -0.0021 36 1 7.7575 -2.6258 0.2804 37 1 6.6452 -1.8401 1.4265 38 1 7.4171 -3.3861 1.8534 39 1 4.9489 -5.4277 0.0945 40 1 7.4274 -4.8147 -1.2618 41 1 6.9092 -6.5170 -0.9013 42 1 11.5518 -4.9581 1.9058 43 1 6.3717 -6.7309 1.6121 44 1 6.6397 -5.1282 2.4220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044314257.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:33 Heat of formation + Delta-G solvation = 187.053519 kcal Electronic energy + Delta-G solvation = -28647.435559 eV Core-core repulsion = 24799.153355 eV Total energy + Delta-G solvation = -3848.282204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.52976 -40.38472 -38.67470 -38.14007 -34.99667 -34.26487 -32.81477 -32.30063 -30.58697 -28.85299 -28.34345 -27.58241 -26.92041 -25.53641 -25.00029 -22.79172 -22.44172 -21.08321 -20.22855 -18.83633 -18.18252 -17.87955 -17.53508 -16.72239 -16.48193 -16.24020 -15.40031 -15.24826 -14.83384 -14.31910 -14.19979 -14.14026 -13.87845 -13.52652 -13.38361 -13.32441 -13.14751 -12.97108 -12.94249 -12.65074 -12.46587 -12.22252 -11.79864 -11.56041 -11.49710 -11.14254 -11.06007 -10.94108 -10.76623 -10.50221 -10.43544 -9.72984 -9.39808 -9.34126 -9.29108 -9.08961 -8.47206 -8.03889 -7.31806 -6.44692 -3.39124 -0.02057 0.66854 1.71590 2.28529 2.74549 2.77120 3.19768 3.25062 3.31861 3.51047 3.52404 3.88133 3.98076 4.42425 4.52368 4.56291 4.66996 4.80126 4.91444 4.96808 5.17158 5.25914 5.27436 5.30511 5.33544 5.38178 5.38687 5.48381 5.58090 5.62417 5.70876 5.74135 5.74981 5.89403 6.02397 6.06944 6.10488 6.21792 6.24802 6.39121 6.39943 6.72881 6.91345 7.33258 7.35310 7.42994 7.96160 8.09010 8.82443 9.33470 10.19069 11.06387 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015951 B = 0.003818 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.955748 B = 7332.880844 C = 8218.422968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.100 3.900 3 C -0.260 4.260 4 C 0.257 3.743 5 N -0.456 5.456 6 C 0.202 3.798 7 C -0.108 4.108 8 C -0.199 4.199 9 C 0.158 3.842 10 C 0.553 3.447 11 O -0.501 6.501 12 N -0.563 5.563 13 C 0.057 3.943 14 C 0.098 3.902 15 C 0.112 3.888 16 N -0.625 5.625 17 C -0.302 4.302 18 H 0.083 0.917 19 C -0.021 4.021 20 N -0.932 5.932 21 Si 1.066 2.934 22 H -0.294 1.294 23 H -0.291 1.291 24 H -0.289 1.289 25 C 0.080 3.920 26 N -0.292 5.292 27 N -0.277 5.277 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.162 0.838 32 H 0.092 0.908 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.195 0.805 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.262 0.738 43 H 0.060 0.940 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.018 13.062 -5.069 19.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.059 4.059 3 C -0.290 4.290 4 C 0.030 3.970 5 N -0.169 5.169 6 C 0.037 3.963 7 C -0.165 4.165 8 C -0.223 4.223 9 C 0.040 3.960 10 C 0.337 3.663 11 O -0.376 6.376 12 N -0.294 5.294 13 C -0.084 4.084 14 C -0.006 4.006 15 C -0.015 4.015 16 N -0.354 5.354 17 C -0.428 4.428 18 H 0.101 0.899 19 C -0.220 4.220 20 N -0.574 5.574 21 Si 0.899 3.101 22 H -0.221 1.221 23 H -0.220 1.220 24 H -0.216 1.216 25 C -0.045 4.045 26 N -0.065 5.065 27 N -0.102 5.102 28 H 0.101 0.899 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.180 0.820 32 H 0.110 0.890 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.211 0.789 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.119 0.881 39 H 0.129 0.871 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.748 12.256 -3.579 18.762 hybrid contribution 0.422 -0.097 -1.704 1.758 sum -13.326 12.159 -5.283 18.797 Atomic orbital electron populations 1.20258 0.85511 1.03818 1.03508 1.22415 0.97561 0.90198 0.95728 1.20815 0.87239 1.00200 1.20789 1.20700 0.94681 0.79841 1.01805 1.67756 0.95990 1.37441 1.15759 1.21919 0.94295 0.90694 0.89357 1.20875 0.90672 1.00614 1.04363 1.23063 0.99164 0.95624 1.04494 1.20334 0.83063 0.93963 0.98663 1.17458 0.83746 0.84716 0.80348 1.90872 1.32429 1.68304 1.45955 1.47148 1.17202 1.06930 1.58165 1.22672 0.88224 0.96944 1.00587 1.22625 0.99689 0.78356 0.99959 1.22769 0.88759 0.98233 0.91746 1.46307 1.01879 1.85536 1.01675 1.20143 0.79313 1.48774 0.94584 0.89884 1.25595 0.99829 0.99481 0.97092 1.70910 1.01342 1.50091 1.35011 0.83821 0.73567 0.76165 0.76500 1.22106 1.22031 1.21614 1.23280 0.86996 0.98295 0.95973 1.47011 1.05643 1.06691 1.47126 1.78262 0.82128 1.20501 1.29342 0.89903 0.90343 0.89874 0.82010 0.88958 0.89392 0.89016 0.78877 0.90639 0.90996 0.88139 0.87075 0.93121 0.92973 0.92728 0.92283 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.43 36.00 0.38 -0.26 16 2 C 0.10 1.35 7.15 -82.63 -0.59 0.76 16 3 C -0.26 -3.45 10.82 -39.18 -0.42 -3.88 16 4 C 0.26 3.93 7.93 -155.57 -1.23 2.69 16 5 N -0.46 -6.27 10.36 -8.48 -0.09 -6.36 16 6 C 0.20 2.32 6.82 -82.18 -0.56 1.76 16 7 C -0.11 -0.79 10.18 36.00 0.37 -0.42 16 8 C -0.20 -2.47 7.26 -39.36 -0.29 -2.76 16 9 C 0.16 2.51 6.47 -81.98 -0.53 1.98 16 10 C 0.55 9.67 7.57 -12.48 -0.09 9.57 16 11 O -0.50 -10.14 15.83 5.29 0.08 -10.06 16 12 N -0.56 -9.44 3.12 -174.80 -0.54 -9.99 16 13 C 0.06 0.89 7.68 59.85 0.46 1.35 16 14 C 0.10 1.71 4.69 -67.67 -0.32 1.39 16 15 C 0.11 2.04 8.31 -8.50 -0.07 1.97 16 16 N -0.62 -13.66 2.43 -184.61 -0.45 -14.11 16 17 C -0.30 -7.78 10.92 -15.06 -0.16 -7.94 16 18 H 0.08 2.29 8.05 -52.49 -0.42 1.87 16 19 C -0.02 -0.56 5.50 -17.43 -0.10 -0.66 16 20 N -0.93 -27.23 13.70 55.49 0.76 -26.47 16 21 Si 1.07 24.82 24.24 -169.99 -4.12 20.70 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -6.18 5.53 56.52 0.31 -5.86 16 24 H -0.29 -6.47 6.70 56.52 0.38 -6.09 16 25 C 0.08 1.57 5.00 -8.37 -0.04 1.53 16 26 N -0.29 -4.94 3.93 -8.88 -0.03 -4.97 16 27 N -0.28 -4.78 11.88 33.51 0.40 -4.39 16 28 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.68 8.14 -51.92 -0.42 0.26 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.16 1.68 8.06 -52.49 -0.42 1.26 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.54 8.09 -51.93 -0.42 0.12 16 35 H 0.19 2.05 4.27 -52.48 -0.22 1.83 16 36 H 0.08 1.10 7.21 -51.93 -0.37 0.73 16 37 H 0.07 0.94 5.03 -51.93 -0.26 0.68 16 38 H 0.10 1.89 4.08 -51.93 -0.21 1.68 16 39 H 0.11 1.85 7.26 -51.93 -0.38 1.47 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.26 7.58 8.73 -40.82 -0.36 7.22 16 43 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 44 H 0.06 1.23 3.31 -51.93 -0.17 1.06 16 LS Contribution 350.73 15.07 5.29 5.29 Total: -1.00 -34.08 350.73 -7.45 -41.52 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.53 Total: 1.74 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: -3.21 Total: 7.09 kcal Atomic # 7 Polarization: -66.32 SS G_CDS: 0.04 Total: -66.28 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.08 Total: -10.06 kcal Atomic # 14 Polarization: 24.82 SS G_CDS: -4.12 Total: 20.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -34.08 -7.45 -41.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044314257.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 228.576 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 194.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 187.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds