Wall clock time and date at job start Tue Mar 31 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30165 * 125.70647 * 2 1 4 4 N 1.39973 * 109.85963 * 180.02562 * 3 2 1 5 5 C 1.46490 * 125.89248 * 180.02562 * 4 3 2 6 6 C 1.37107 * 108.21540 * 0.02562 * 4 3 2 7 7 N 1.32268 * 133.49200 * 180.32318 * 6 4 3 8 8 C 1.32381 * 121.42177 * 180.15569 * 7 6 4 9 9 C 1.48108 * 119.35884 * 179.75661 * 8 7 6 10 10 O 1.21530 * 119.99904 * 186.62602 * 9 8 7 11 11 N 1.34773 * 119.99838 * 6.62601 * 9 8 7 12 12 C 1.46496 * 120.00075 * 357.28424 * 11 9 8 13 13 C 1.46506 * 119.99820 * 177.28928 * 11 9 8 14 14 C 1.53950 * 113.74043 * 141.25613 * 13 11 9 15 15 N 1.47813 * 86.03693 * 90.88127 * 14 13 11 16 16 C 1.36933 * 134.45745 * 204.64861 * 15 14 13 17 17 H 1.08003 * 119.99957 * 179.87157 * 16 15 14 18 18 C 1.38814 * 120.00085 * 359.85930 * 16 15 14 19 19 N 1.31622 * 119.99679 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47220 * 90.00463 * 20 18 16 22 22 H 1.48506 * 109.47002 * 209.99916 * 20 18 16 23 23 H 1.48498 * 109.47390 * 329.99672 * 20 18 16 24 24 C 1.47581 * 91.04935 * 24.54840 * 15 14 13 25 25 C 1.39871 * 121.28423 * 359.47376 * 8 7 6 26 26 C 1.36849 * 119.59450 * 0.25876 * 25 8 7 27 27 C 1.40178 * 118.30701 * 359.97438 * 26 25 8 28 28 H 1.09005 * 109.47039 * 269.95695 * 1 2 3 29 29 H 1.09003 * 109.46891 * 29.95374 * 1 2 3 30 30 H 1.08994 * 109.47156 * 149.95277 * 1 2 3 31 31 H 1.09000 * 109.47783 * 269.97678 * 5 4 3 32 32 H 1.09005 * 109.47378 * 29.97801 * 5 4 3 33 33 H 1.09006 * 109.46982 * 149.97648 * 5 4 3 34 34 H 1.08998 * 109.47433 * 276.08517 * 12 11 9 35 35 H 1.08994 * 109.47078 * 36.08301 * 12 11 9 36 36 H 1.09000 * 109.47299 * 156.08183 * 12 11 9 37 37 H 1.09001 * 112.94522 * 9.66663 * 13 11 9 38 38 H 1.08997 * 113.76739 * 205.14718 * 14 13 11 39 39 H 1.08997 * 113.76816 * 336.54299 * 14 13 11 40 40 H 0.96996 * 119.99235 * 179.97438 * 19 18 16 41 41 H 1.09006 * 113.76836 * 221.15534 * 24 15 14 42 42 H 1.09000 * 113.77008 * 89.75379 * 24 15 14 43 43 H 1.08002 * 120.20353 * 180.23235 * 25 8 7 44 44 H 1.08000 * 120.84664 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2667 1.0570 0.0000 4 7 3.6133 0.6747 -0.0006 5 6 4.7635 1.5819 -0.0002 6 6 3.6699 -0.6952 -0.0015 7 7 4.6663 -1.5651 0.0030 8 6 4.4432 -2.8699 -0.0025 9 6 5.5933 -3.8032 -0.0025 10 8 5.4067 -4.9974 -0.1289 11 7 6.8466 -3.3281 0.1377 12 6 7.0766 -1.8842 0.2303 13 6 7.9792 -4.2555 0.1974 14 6 9.2298 -3.7554 -0.5483 15 7 9.6304 -3.1512 0.7398 16 6 10.4338 -2.1018 1.0982 17 1 10.5657 -1.8543 2.1412 18 6 11.0789 -1.3563 0.1210 19 7 10.9180 -1.6578 -1.1501 20 14 12.1754 0.0748 0.6099 21 1 13.5651 -0.4107 0.8053 22 1 12.1562 1.1020 -0.4624 23 1 11.6767 0.6708 1.8753 24 6 8.8153 -4.1308 1.4840 25 6 3.1426 -3.3845 -0.0023 26 6 2.0764 -2.5266 -0.0019 27 6 2.3322 -1.1483 -0.0009 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3633 -0.8895 -0.5145 31 1 5.0489 1.8073 -1.0278 32 1 4.4977 2.5055 0.5140 33 1 5.5999 1.1078 0.5135 34 1 7.1212 -1.4583 -0.7720 35 1 6.2610 -1.4214 0.7858 36 1 8.0187 -1.6987 0.7462 37 1 7.7023 -5.2807 -0.0485 38 1 9.8907 -4.5549 -0.8830 39 1 9.0135 -3.0259 -1.3287 40 1 11.3685 -1.1366 -1.8329 41 1 8.2686 -3.7004 2.3231 42 1 9.3542 -5.0409 1.7476 43 1 2.9807 -4.4523 -0.0031 44 1 1.0637 -2.9018 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044338712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:17 Heat of formation + Delta-G solvation = 161.180780 kcal Electronic energy + Delta-G solvation = -28395.624772 eV Core-core repulsion = 24546.220642 eV Total energy + Delta-G solvation = -3849.404130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.96598 -39.96420 -38.28185 -37.21268 -34.82895 -33.97014 -32.20611 -31.73655 -30.43805 -29.76731 -27.88295 -26.16919 -25.73308 -25.05742 -24.79010 -23.13289 -22.52912 -20.73050 -19.88065 -18.43412 -17.64044 -17.49348 -16.97205 -16.57662 -16.17778 -15.62390 -15.11517 -14.88718 -14.73499 -14.07812 -13.84633 -13.80381 -13.64134 -13.58948 -13.32503 -13.10556 -12.96856 -12.67057 -12.47709 -12.38556 -12.26631 -11.91892 -11.44417 -11.30115 -11.23901 -11.07468 -10.88698 -10.63818 -10.60590 -10.14415 -10.00727 -9.77754 -9.54675 -9.15850 -9.02835 -8.69810 -8.42801 -7.93803 -6.88496 -5.80596 -3.13758 0.28058 1.12832 1.95779 2.14502 2.93225 3.29322 3.35535 3.40870 3.42460 3.81381 3.90597 4.06372 4.39026 4.41334 4.58231 4.79927 4.98678 5.03794 5.09578 5.15418 5.18664 5.24047 5.36252 5.45146 5.47961 5.53457 5.57601 5.61101 5.93567 6.01514 6.10019 6.19278 6.24098 6.34317 6.46492 6.52449 6.59451 6.63758 6.91702 7.09108 7.18351 7.26303 7.31449 7.53157 7.66566 7.90786 7.97041 8.47650 8.99982 9.66226 10.54726 11.35456 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.003772 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.711971 B = 7421.069866 C = 9090.598398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.099 3.901 3 N -0.239 5.239 4 N -0.387 5.387 5 C 0.110 3.890 6 C 0.303 3.697 7 N -0.455 5.455 8 C 0.164 3.836 9 C 0.558 3.442 10 O -0.546 6.546 11 N -0.548 5.548 12 C 0.067 3.933 13 C 0.082 3.918 14 C 0.155 3.845 15 N -0.608 5.608 16 C -0.225 4.225 17 H 0.079 0.921 18 C -0.004 4.004 19 N -0.916 5.916 20 Si 0.908 3.092 21 H -0.290 1.290 22 H -0.290 1.290 23 H -0.281 1.281 24 C 0.108 3.892 25 C -0.161 4.161 26 C -0.002 4.002 27 C -0.210 4.210 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.088 0.912 36 H 0.108 0.892 37 H 0.096 0.904 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.254 0.746 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.154 0.846 44 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.406 2.111 1.943 20.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.077 4.077 3 N -0.055 5.055 4 N -0.177 5.177 5 C -0.031 4.031 6 C 0.063 3.937 7 N -0.173 5.173 8 C 0.013 3.987 9 C 0.344 3.656 10 O -0.424 6.424 11 N -0.276 5.276 12 C -0.075 4.075 13 C -0.022 4.022 14 C 0.029 3.971 15 N -0.335 5.335 16 C -0.352 4.352 17 H 0.097 0.903 18 C -0.201 4.201 19 N -0.563 5.563 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.019 4.019 25 C -0.184 4.184 26 C -0.031 4.031 27 C -0.221 4.221 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.066 0.934 35 H 0.105 0.895 36 H 0.126 0.874 37 H 0.114 0.886 38 H 0.057 0.943 39 H 0.098 0.902 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.063 0.937 43 H 0.172 0.828 44 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.201 3.592 1.822 19.619 hybrid contribution 0.312 -0.167 0.143 0.382 sum -18.890 3.425 1.965 19.298 Atomic orbital electron populations 1.20276 0.85586 1.03938 1.03552 1.22291 0.97085 0.88849 0.99451 1.76726 0.86420 1.23064 1.19292 1.48239 1.04500 1.01575 1.63347 1.21921 0.84310 0.93127 1.03735 1.19274 0.90337 0.86399 0.97696 1.67490 1.31960 1.01812 1.16033 1.21293 0.94077 0.88455 0.94893 1.17861 0.82479 0.86810 0.78473 1.90746 1.84809 1.14885 1.51941 1.47396 1.04443 1.08984 1.66792 1.22622 1.04840 0.77449 1.02582 1.23048 0.86773 0.92729 0.99664 1.22659 0.87898 0.95105 0.91419 1.46202 1.55095 1.30304 1.01916 1.18977 1.20668 1.03145 0.92459 0.90325 1.24752 1.00378 0.99664 0.95267 1.69819 1.46394 1.41449 0.98650 0.86188 0.80726 0.81956 0.77280 1.21690 1.21673 1.20642 1.22996 0.91291 0.93078 0.94554 1.21521 0.91212 1.02178 1.03456 1.20749 0.99866 0.89905 0.92588 1.19588 0.93864 0.95282 1.13334 0.89869 0.90232 0.89953 0.90711 0.89350 0.88555 0.93354 0.89453 0.87420 0.88580 0.94327 0.90210 0.93623 0.93558 0.93721 0.82843 0.83754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.45 36.01 0.38 -0.09 16 2 C 0.10 1.09 7.23 -82.09 -0.59 0.49 16 3 N -0.24 -3.08 12.43 33.88 0.42 -2.66 16 4 N -0.39 -5.26 4.07 -67.16 -0.27 -5.53 16 5 C 0.11 1.20 11.48 59.84 0.69 1.88 16 6 C 0.30 4.46 8.00 -156.14 -1.25 3.21 16 7 N -0.45 -7.25 5.99 -8.88 -0.05 -7.30 16 8 C 0.16 2.59 6.64 -82.97 -0.55 2.04 16 9 C 0.56 10.22 7.65 -12.21 -0.09 10.12 16 10 O -0.55 -10.74 15.78 5.34 0.08 -10.65 16 11 N -0.55 -10.59 3.09 -176.76 -0.55 -11.14 16 12 C 0.07 1.30 8.40 59.84 0.50 1.81 16 13 C 0.08 1.65 4.53 -70.13 -0.32 1.33 16 14 C 0.16 3.60 6.77 -2.84 -0.02 3.58 16 15 N -0.61 -14.83 2.26 -177.86 -0.40 -15.23 16 16 C -0.23 -5.98 9.68 -15.06 -0.15 -6.12 16 17 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 18 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 19 N -0.92 -26.00 11.39 55.49 0.63 -25.36 16 20 Si 0.91 21.35 29.55 -169.99 -5.02 16.33 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 C 0.11 2.21 8.39 -2.97 -0.02 2.18 16 25 C -0.16 -2.03 9.54 -39.47 -0.38 -2.41 16 26 C 0.00 -0.02 10.17 -39.36 -0.40 -0.42 16 27 C -0.21 -2.61 6.12 -106.82 -0.65 -3.26 16 28 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 34 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.09 1.56 5.17 -53.57 -0.28 1.29 16 36 H 0.11 2.41 5.08 -51.93 -0.26 2.15 16 37 H 0.10 1.85 7.21 -51.93 -0.37 1.47 16 38 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 2.05 6.90 -51.93 -0.36 1.69 16 40 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.15 1.75 7.62 -52.49 -0.40 1.35 16 44 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 364.05 15.07 5.49 5.49 Total: -1.00 -32.32 364.05 -8.50 -40.83 By element: Atomic # 1 Polarization: 6.96 SS G_CDS: -5.87 Total: 1.09 kcal Atomic # 6 Polarization: 17.10 SS G_CDS: -2.96 Total: 14.14 kcal Atomic # 7 Polarization: -67.00 SS G_CDS: -0.22 Total: -67.22 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.32 -8.50 -40.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044338712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.006 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 169.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 161.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds