Wall clock time and date at job start Tue Mar 31 2020 05:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30165 * 125.70647 * 2 1 4 4 N 1.39973 * 109.85963 * 180.02562 * 3 2 1 5 5 C 1.46490 * 125.89248 * 180.02562 * 4 3 2 6 6 C 1.37107 * 108.21540 * 0.02562 * 4 3 2 7 7 N 1.32268 * 133.49200 * 180.32318 * 6 4 3 8 8 C 1.32381 * 121.42177 * 180.15569 * 7 6 4 9 9 C 1.48108 * 119.35884 * 179.75661 * 8 7 6 10 10 O 1.21530 * 119.99904 * 186.62602 * 9 8 7 11 11 N 1.34773 * 119.99838 * 6.62601 * 9 8 7 12 12 C 1.46496 * 120.00075 * 357.28424 * 11 9 8 13 13 C 1.46506 * 119.99820 * 177.28928 * 11 9 8 14 14 C 1.53950 * 113.74043 * 141.25613 * 13 11 9 15 15 N 1.47813 * 86.03693 * 90.88127 * 14 13 11 16 16 C 1.36933 * 134.45745 * 204.64861 * 15 14 13 17 17 H 1.08003 * 119.99957 * 179.87157 * 16 15 14 18 18 C 1.38814 * 120.00085 * 359.85930 * 16 15 14 19 19 N 1.31622 * 119.99679 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99911 * 180.02562 * 18 16 15 21 21 H 1.48494 * 109.47220 * 90.00463 * 20 18 16 22 22 H 1.48506 * 109.47002 * 209.99916 * 20 18 16 23 23 H 1.48498 * 109.47390 * 329.99672 * 20 18 16 24 24 C 1.47581 * 91.04935 * 24.54840 * 15 14 13 25 25 C 1.39871 * 121.28423 * 359.47376 * 8 7 6 26 26 C 1.36849 * 119.59450 * 0.25876 * 25 8 7 27 27 C 1.40178 * 118.30701 * 359.97438 * 26 25 8 28 28 H 1.09005 * 109.47039 * 269.95695 * 1 2 3 29 29 H 1.09003 * 109.46891 * 29.95374 * 1 2 3 30 30 H 1.08994 * 109.47156 * 149.95277 * 1 2 3 31 31 H 1.09000 * 109.47783 * 269.97678 * 5 4 3 32 32 H 1.09005 * 109.47378 * 29.97801 * 5 4 3 33 33 H 1.09006 * 109.46982 * 149.97648 * 5 4 3 34 34 H 1.08998 * 109.47433 * 276.08517 * 12 11 9 35 35 H 1.08994 * 109.47078 * 36.08301 * 12 11 9 36 36 H 1.09000 * 109.47299 * 156.08183 * 12 11 9 37 37 H 1.09001 * 112.94522 * 9.66663 * 13 11 9 38 38 H 1.08997 * 113.76739 * 205.14718 * 14 13 11 39 39 H 1.08997 * 113.76816 * 336.54299 * 14 13 11 40 40 H 0.96996 * 119.99235 * 179.97438 * 19 18 16 41 41 H 1.09006 * 113.76836 * 221.15534 * 24 15 14 42 42 H 1.09000 * 113.77008 * 89.75379 * 24 15 14 43 43 H 1.08002 * 120.20353 * 180.23235 * 25 8 7 44 44 H 1.08000 * 120.84664 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2667 1.0570 0.0000 4 7 3.6133 0.6747 -0.0006 5 6 4.7635 1.5819 -0.0002 6 6 3.6699 -0.6952 -0.0015 7 7 4.6663 -1.5651 0.0030 8 6 4.4432 -2.8699 -0.0025 9 6 5.5933 -3.8032 -0.0025 10 8 5.4067 -4.9974 -0.1289 11 7 6.8466 -3.3281 0.1377 12 6 7.0766 -1.8842 0.2303 13 6 7.9792 -4.2555 0.1974 14 6 9.2298 -3.7554 -0.5483 15 7 9.6304 -3.1512 0.7398 16 6 10.4338 -2.1018 1.0982 17 1 10.5657 -1.8543 2.1412 18 6 11.0789 -1.3563 0.1210 19 7 10.9180 -1.6578 -1.1501 20 14 12.1754 0.0748 0.6099 21 1 13.5651 -0.4107 0.8053 22 1 12.1562 1.1020 -0.4624 23 1 11.6767 0.6708 1.8753 24 6 8.8153 -4.1308 1.4840 25 6 3.1426 -3.3845 -0.0023 26 6 2.0764 -2.5266 -0.0019 27 6 2.3322 -1.1483 -0.0009 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3633 -0.8895 -0.5145 31 1 5.0489 1.8073 -1.0278 32 1 4.4977 2.5055 0.5140 33 1 5.5999 1.1078 0.5135 34 1 7.1212 -1.4583 -0.7720 35 1 6.2610 -1.4214 0.7858 36 1 8.0187 -1.6987 0.7462 37 1 7.7023 -5.2807 -0.0485 38 1 9.8907 -4.5549 -0.8830 39 1 9.0135 -3.0259 -1.3287 40 1 11.3685 -1.1366 -1.8329 41 1 8.2686 -3.7004 2.3231 42 1 9.3542 -5.0409 1.7476 43 1 2.9807 -4.4523 -0.0031 44 1 1.0637 -2.9018 -0.0013 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044338712.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:16 Heat of formation + Delta-G solvation = 142.422993 kcal Electronic energy + Delta-G solvation = -28396.438170 eV Core-core repulsion = 24546.220642 eV Total energy + Delta-G solvation = -3850.217528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.94231 -41.40963 -39.69508 -38.58678 -35.92020 -35.35371 -34.05284 -32.84076 -31.51621 -30.44146 -29.76092 -27.69781 -26.67503 -26.57466 -26.36136 -24.63522 -23.69896 -22.12717 -20.85113 -20.02883 -18.96329 -18.63307 -18.47116 -17.88493 -17.21952 -17.17923 -16.83517 -16.41400 -15.94267 -15.61899 -15.28060 -14.83288 -14.66046 -14.56956 -14.50692 -14.23924 -14.16328 -13.91111 -13.77864 -13.63238 -13.22035 -13.15042 -13.04971 -12.88963 -12.75392 -12.62945 -12.42608 -12.01357 -11.99347 -11.64287 -11.54850 -11.49567 -11.39963 -10.90889 -10.19159 -10.06105 -9.58567 -9.31439 -8.85894 -7.87278 -5.21042 -0.76605 0.18191 1.04181 1.17169 1.46736 1.47839 1.56102 1.71821 1.88754 2.47690 2.69277 2.83915 3.17989 3.27221 3.41048 3.47710 3.54717 3.83242 3.87048 4.08686 4.25029 4.27378 4.32742 4.40207 4.50267 4.60403 4.63082 4.68800 4.77336 4.85945 4.86618 4.88361 4.93791 4.95322 5.06429 5.16903 5.26793 5.29794 5.39305 5.48350 5.55370 5.60524 5.75084 5.91326 6.30760 6.41486 6.62306 6.92523 7.01569 7.62288 8.55964 9.28501 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014041 B = 0.003772 C = 0.003079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.711971 B = 7421.069866 C = 9090.598398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.110 3.890 3 N -0.261 5.261 4 N -0.400 5.400 5 C 0.107 3.893 6 C 0.277 3.723 7 N -0.482 5.482 8 C 0.140 3.860 9 C 0.560 3.440 10 O -0.560 6.560 11 N -0.559 5.559 12 C 0.093 3.907 13 C 0.100 3.900 14 C 0.156 3.844 15 N -0.627 5.627 16 C -0.228 4.228 17 H 0.082 0.918 18 C -0.057 4.057 19 N -0.947 5.947 20 Si 0.971 3.029 21 H -0.291 1.291 22 H -0.296 1.296 23 H -0.268 1.268 24 C 0.114 3.886 25 C -0.162 4.162 26 C 0.024 3.976 27 C -0.214 4.214 28 H 0.101 0.899 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.027 0.973 35 H 0.104 0.896 36 H 0.077 0.923 37 H 0.109 0.891 38 H 0.034 0.966 39 H 0.048 0.952 40 H 0.247 0.753 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.168 0.832 44 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.619 1.958 3.005 23.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 N -0.077 5.077 4 N -0.191 5.191 5 C -0.033 4.033 6 C 0.037 3.963 7 N -0.200 5.200 8 C -0.010 4.010 9 C 0.348 3.652 10 O -0.439 6.439 11 N -0.287 5.287 12 C -0.050 4.050 13 C -0.005 4.005 14 C 0.030 3.970 15 N -0.354 5.354 16 C -0.356 4.356 17 H 0.100 0.900 18 C -0.250 4.250 19 N -0.596 5.596 20 Si 0.800 3.200 21 H -0.219 1.219 22 H -0.223 1.223 23 H -0.192 1.192 24 C -0.012 4.012 25 C -0.185 4.185 26 C -0.004 4.004 27 C -0.224 4.224 28 H 0.120 0.880 29 H 0.104 0.896 30 H 0.127 0.873 31 H 0.094 0.906 32 H 0.125 0.875 33 H 0.104 0.896 34 H 0.046 0.954 35 H 0.122 0.878 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.051 0.949 39 H 0.066 0.934 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.185 0.815 44 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -22.430 3.425 2.913 22.877 hybrid contribution 1.149 -0.127 -0.186 1.171 sum -21.282 3.298 2.727 21.708 Atomic orbital electron populations 1.20539 0.81957 1.05622 1.05189 1.23066 0.99016 0.87550 0.97000 1.76733 0.86217 1.24132 1.20619 1.48485 1.05237 1.01483 1.63865 1.21992 0.83828 0.93536 1.03985 1.19551 0.91316 0.86888 0.98566 1.67136 1.33430 1.02200 1.17271 1.21040 0.94257 0.88239 0.97433 1.18242 0.82590 0.87161 0.77214 1.90718 1.85122 1.15650 1.52397 1.47435 1.04916 1.08605 1.67780 1.22299 1.03759 0.77841 1.01077 1.22789 0.86067 0.93263 0.98341 1.22522 0.89679 0.94137 0.90683 1.46388 1.55045 1.30863 1.03145 1.19277 1.19992 1.03699 0.92615 0.89998 1.25473 1.02103 1.02209 0.95263 1.70003 1.47561 1.42560 0.99449 0.85195 0.78676 0.79003 0.77144 1.21875 1.22264 1.19237 1.23102 0.90648 0.92759 0.94657 1.21697 0.90256 1.03232 1.03295 1.21261 1.01558 0.88436 0.89136 1.19970 0.93042 0.96694 1.12699 0.88033 0.89563 0.87307 0.90579 0.87456 0.89573 0.95417 0.87838 0.90489 0.87283 0.94854 0.93388 0.94430 0.92926 0.91726 0.81471 0.78517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.60 10.45 71.24 0.74 0.14 16 2 C 0.11 2.08 7.23 43.59 0.32 2.40 16 3 N -0.26 -6.33 12.43 -46.73 -0.58 -6.91 16 4 N -0.40 -10.77 4.07 -366.40 -1.49 -12.26 16 5 C 0.11 2.39 11.48 127.77 1.47 3.86 16 6 C 0.28 7.99 8.00 134.26 1.07 9.07 16 7 N -0.48 -15.46 5.99 -182.02 -1.09 -16.55 16 8 C 0.14 4.33 6.64 42.08 0.28 4.61 16 9 C 0.56 20.49 7.65 86.86 0.66 21.16 16 10 O -0.56 -21.64 15.78 -3.81 -0.06 -21.70 16 11 N -0.56 -22.05 3.09 -831.42 -2.57 -24.62 16 12 C 0.09 3.77 8.40 127.77 1.07 4.84 16 13 C 0.10 4.06 4.53 46.75 0.21 4.27 16 14 C 0.16 7.50 6.77 86.44 0.59 8.08 16 15 N -0.63 -31.24 2.26 -716.63 -1.62 -32.86 16 16 C -0.23 -12.31 9.68 84.03 0.81 -11.50 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 19 N -0.95 -55.78 11.39 21.65 0.25 -55.53 16 20 Si 0.97 44.81 29.55 68.60 2.03 46.84 16 21 H -0.29 -13.45 7.11 99.48 0.71 -12.74 16 22 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.27 -11.63 7.11 99.48 0.71 -10.93 16 24 C 0.11 4.65 8.39 86.48 0.73 5.37 16 25 C -0.16 -3.67 9.54 22.34 0.21 -3.46 16 26 C 0.02 0.40 10.17 22.42 0.23 0.63 16 27 C -0.21 -4.72 6.12 -21.29 -0.13 -4.85 16 28 H 0.10 0.53 8.14 -2.38 -0.02 0.51 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.11 1.90 8.14 -2.38 -0.02 1.88 16 33 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.10 3.87 5.17 -5.62 -0.03 3.84 16 36 H 0.08 3.61 5.08 -2.39 -0.01 3.59 16 37 H 0.11 4.15 7.21 -2.39 -0.02 4.14 16 38 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.05 2.61 6.90 -2.39 -0.02 2.59 16 40 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 41 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 42 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.17 3.31 7.62 -2.91 -0.02 3.29 16 44 H 0.20 1.18 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -72.46 364.05 4.60 -67.85 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.01 Total: 13.79 kcal Atomic # 6 Polarization: 33.22 SS G_CDS: 8.73 Total: 41.95 kcal Atomic # 7 Polarization: -141.63 SS G_CDS: -7.11 Total: -148.74 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.06 Total: -21.70 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -72.46 4.60 -67.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044338712.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 210.275 kcal (2) G-P(sol) polarization free energy of solvation -72.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 137.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds