Wall clock time and date at job start Tue Mar 31 2020 05:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34777 * 119.99832 * 2 1 4 4 O 1.21278 * 119.99854 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.00161 * 359.97438 * 3 2 1 6 6 C 1.53000 * 109.46912 * 180.02562 * 5 3 2 7 7 H 1.08996 * 110.46153 * 54.29755 * 6 5 3 8 8 C 1.51135 * 110.50882 * 176.90475 * 6 5 3 9 9 C 1.37680 * 132.84658 * 298.62314 * 8 6 5 10 10 C 1.38393 * 119.91431 * 180.02562 * 9 8 6 11 11 C 1.38296 * 119.82541 * 359.92724 * 10 9 8 12 12 C 1.37934 * 120.37724 * 0.05371 * 11 10 9 13 13 C 1.38900 * 106.34633 * 118.64549 * 8 6 5 14 14 N 1.39535 * 110.22707 * 359.97438 * 13 8 6 15 15 C 1.34675 * 112.28447 * 0.08604 * 14 13 8 16 16 O 1.21286 * 126.60359 * 179.97438 * 15 14 13 17 17 C 1.46496 * 119.99896 * 179.97438 * 2 1 3 18 18 C 1.53942 * 113.74211 * 38.74475 * 17 2 1 19 19 N 1.47816 * 86.03604 * 222.08253 * 18 17 2 20 20 C 1.36936 * 134.45310 * 204.64011 * 19 18 17 21 21 H 1.07999 * 119.99919 * 179.86544 * 20 19 18 22 22 C 1.38806 * 120.00361 * 359.86911 * 20 19 18 23 23 N 1.31623 * 120.00403 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 120.00220 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47119 * 59.99989 * 24 22 20 26 26 H 1.48497 * 109.47248 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47134 * 300.00299 * 24 22 20 28 28 C 1.47574 * 91.04993 * 24.54781 * 19 18 17 29 29 H 1.08999 * 109.47333 * 89.99805 * 1 2 3 30 30 H 1.08997 * 109.47024 * 210.00620 * 1 2 3 31 31 H 1.09000 * 109.46875 * 330.00379 * 1 2 3 32 32 H 1.09002 * 109.47152 * 60.00245 * 5 3 2 33 33 H 1.09001 * 109.46980 * 300.00345 * 5 3 2 34 34 H 1.07997 * 120.04304 * 0.02628 * 9 8 6 35 35 H 1.08002 * 120.08744 * 179.97438 * 10 9 8 36 36 H 1.08005 * 119.81219 * 180.02562 * 11 10 9 37 37 H 1.08003 * 119.93496 * 179.97438 * 12 11 10 38 38 H 0.96998 * 123.87516 * 179.97438 * 14 13 8 39 39 H 1.09001 * 112.94348 * 170.33140 * 17 2 1 40 40 H 1.09007 * 113.76971 * 336.34199 * 18 17 2 41 41 H 1.08994 * 113.77316 * 107.74307 * 18 17 2 42 42 H 0.96994 * 120.00852 * 179.97438 * 23 22 20 43 43 H 1.09001 * 113.77175 * 221.15496 * 28 19 18 44 44 H 1.09003 * 113.87576 * 89.76914 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3517 1.1672 -0.0005 5 6 1.3854 2.4723 -0.0006 6 6 2.3797 3.6352 -0.0011 7 1 3.0802 3.5372 -0.8303 8 6 1.6494 4.9562 -0.0781 9 6 0.8105 5.5088 -1.0197 10 6 0.2778 6.7695 -0.8144 11 6 0.5896 7.4688 0.3373 12 6 1.4295 6.9173 1.2823 13 6 1.9714 5.6491 1.0819 14 7 2.8310 4.8884 1.8753 15 6 3.1221 3.6981 1.3168 16 8 3.8408 2.8381 1.7805 17 6 2.1975 -1.2687 0.0006 18 6 1.5556 -2.3554 -0.8809 19 7 1.8611 -3.2878 0.2247 20 6 2.0638 -4.6393 0.3110 21 1 2.2808 -5.0928 1.2668 22 6 1.9905 -5.4264 -0.8299 23 7 1.7256 -4.8739 -1.9948 24 14 2.2678 -7.2700 -0.7122 25 1 1.2582 -7.8652 0.1997 26 1 2.1353 -7.8776 -2.0607 27 1 3.6297 -7.5329 -0.1819 28 6 1.8621 -2.1776 1.1969 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3633 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 0.7584 2.5303 0.8892 33 1 0.7590 2.5298 -0.8908 34 1 0.5684 4.9591 -1.9172 35 1 -0.3802 7.2058 -1.5513 36 1 0.1734 8.4525 0.4974 37 1 1.6685 7.4699 2.1790 38 1 3.1804 5.1837 2.7306 39 1 3.2669 -1.1420 -0.1681 40 1 0.4887 -2.2098 -1.0507 41 1 2.1091 -2.5618 -1.7968 42 1 1.6747 -5.4239 -2.7922 43 1 2.6599 -2.2422 1.9368 44 1 0.8863 -1.9783 1.6401 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001044364288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:38 Heat of formation + Delta-G solvation = 36.715762 kcal Electronic energy + Delta-G solvation = -27662.422503 eV Core-core repulsion = 23775.328414 eV Total energy + Delta-G solvation = -3887.094089 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.84020 -39.66197 -38.53463 -37.51241 -35.81411 -34.36583 -33.67997 -31.95011 -30.51347 -29.37037 -27.77504 -26.67270 -26.11731 -24.76701 -23.12675 -22.85365 -21.73020 -21.08414 -19.55400 -18.36551 -18.13239 -17.27634 -16.86584 -16.59082 -16.29503 -16.02914 -15.47835 -15.29954 -14.79532 -14.69451 -14.31630 -14.03318 -13.79742 -13.62657 -13.28482 -13.16191 -12.91189 -12.47795 -12.39597 -12.35728 -12.09724 -11.79084 -11.71263 -11.46700 -11.24838 -11.21189 -11.06782 -10.85556 -10.67648 -10.19899 -10.10457 -10.01466 -9.52451 -9.42364 -9.17982 -8.78100 -8.31885 -8.04473 -6.88604 -5.76546 -3.09124 0.85565 0.95381 2.36540 2.76271 2.97532 3.29567 3.41756 3.44827 3.46026 3.47506 3.88490 4.11040 4.46280 4.49317 4.61453 4.70092 4.83554 4.94431 4.96298 5.07111 5.22546 5.25393 5.34828 5.40375 5.49893 5.53960 5.55957 5.64752 5.76855 5.82586 5.90388 6.02628 6.12988 6.15101 6.22769 6.32723 6.49205 6.57237 6.63791 6.71978 6.85629 7.22231 7.38997 7.54321 7.84372 7.89531 7.97638 8.56500 9.04667 9.70626 10.58420 11.40742 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.030753 B = 0.002393 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 910.254155 B =11697.830942 C =12193.118109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.602 5.602 3 C 0.502 3.498 4 O -0.518 6.518 5 C -0.116 4.116 6 C -0.066 4.066 7 H 0.131 0.869 8 C -0.139 4.139 9 C -0.061 4.061 10 C -0.145 4.145 11 C -0.085 4.085 12 C -0.145 4.145 13 C 0.152 3.848 14 N -0.670 5.670 15 C 0.527 3.473 16 O -0.457 6.457 17 C 0.093 3.907 18 C 0.158 3.842 19 N -0.607 5.607 20 C -0.222 4.222 21 H 0.081 0.919 22 C -0.008 4.008 23 N -0.922 5.922 24 Si 0.914 3.086 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.284 1.284 28 C 0.108 3.892 29 H 0.057 0.943 30 H 0.077 0.923 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.130 0.870 35 H 0.129 0.871 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.410 0.590 39 H 0.115 0.885 40 H 0.031 0.969 41 H 0.076 0.924 42 H 0.255 0.745 43 H 0.046 0.954 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.564 27.938 3.248 28.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.335 5.335 3 C 0.288 3.712 4 O -0.394 6.394 5 C -0.157 4.157 6 C -0.087 4.087 7 H 0.149 0.851 8 C -0.142 4.142 9 C -0.080 4.080 10 C -0.164 4.164 11 C -0.103 4.103 12 C -0.166 4.166 13 C 0.054 3.946 14 N -0.315 5.315 15 C 0.313 3.687 16 O -0.326 6.326 17 C -0.010 4.010 18 C 0.031 3.969 19 N -0.333 5.333 20 C -0.349 4.349 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.744 3.256 25 H -0.212 1.212 26 H -0.215 1.215 27 H -0.210 1.210 28 C -0.019 4.019 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.125 0.875 34 H 0.148 0.852 35 H 0.147 0.853 36 H 0.147 0.853 37 H 0.143 0.857 38 H 0.248 0.752 39 H 0.133 0.867 40 H 0.049 0.951 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -5.430 26.934 3.315 27.675 hybrid contribution -0.027 -0.795 0.533 0.958 sum -5.456 26.139 3.848 26.978 Atomic orbital electron populations 1.21771 0.80171 1.02808 1.01857 1.47983 1.06686 1.06190 1.72687 1.20388 0.88296 0.85140 0.77362 1.90773 1.13326 1.86979 1.48282 1.21498 0.97922 0.91066 1.05177 1.20445 0.97450 0.92141 0.98681 0.85132 1.19829 1.02217 0.96239 0.95964 1.20333 0.94758 0.95037 0.97843 1.21063 1.02008 0.94924 0.98390 1.20878 0.96458 0.99641 0.93335 1.20365 1.01328 0.93424 1.01508 1.18189 0.92446 0.92778 0.91181 1.43985 1.46733 1.17886 1.22899 1.20579 0.81034 0.80505 0.86579 1.90924 1.34852 1.39625 1.67158 1.23979 0.98065 0.79797 0.99185 1.22659 0.96787 0.83566 0.93848 1.45699 1.81967 1.02173 1.03489 1.18950 1.41415 0.80273 0.94306 0.90143 1.24797 1.02004 0.98253 0.95357 1.69803 1.54659 1.34388 0.98011 0.86165 0.78113 0.84646 0.76626 1.21176 1.21528 1.20997 1.22964 0.97942 0.87366 0.93659 0.92431 0.90411 0.91901 0.88796 0.87522 0.85195 0.85338 0.85345 0.85746 0.75177 0.86673 0.95108 0.90585 0.93532 0.93564 0.94816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.98 8.84 59.85 0.53 1.51 16 2 N -0.60 -10.01 3.09 -175.75 -0.54 -10.55 16 3 C 0.50 8.17 7.36 -10.98 -0.08 8.09 16 4 O -0.52 -10.58 13.26 -16.51 -0.22 -10.80 16 5 C -0.12 -1.29 3.78 -27.88 -0.11 -1.39 16 6 C -0.07 -0.74 2.60 -92.37 -0.24 -0.98 16 7 H 0.13 1.56 7.96 -51.93 -0.41 1.14 16 8 C -0.14 -1.24 5.67 -104.37 -0.59 -1.83 16 9 C -0.06 -0.42 10.04 -39.73 -0.40 -0.82 16 10 C -0.14 -0.83 10.07 -39.50 -0.40 -1.23 16 11 C -0.08 -0.47 10.01 -39.67 -0.40 -0.87 16 12 C -0.14 -0.95 10.07 -39.27 -0.40 -1.35 16 13 C 0.15 1.32 7.11 -83.69 -0.60 0.72 16 14 N -0.67 -6.54 5.89 -9.63 -0.06 -6.60 16 15 C 0.53 7.11 7.84 -10.69 -0.08 7.03 16 16 O -0.46 -8.33 15.74 -16.52 -0.26 -8.59 16 17 C 0.09 1.94 4.40 -70.15 -0.31 1.63 16 18 C 0.16 3.76 6.97 -2.84 -0.02 3.75 16 19 N -0.61 -16.05 3.70 -177.89 -0.66 -16.71 16 20 C -0.22 -6.37 10.70 -15.06 -0.16 -6.53 16 21 H 0.08 2.23 7.83 -52.49 -0.41 1.81 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.60 11.39 55.49 0.63 -26.96 16 24 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 27 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 28 C 0.11 2.36 8.45 -2.97 -0.03 2.33 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 1.09 6.35 -51.93 -0.33 0.76 16 31 H 0.06 0.59 6.44 -51.93 -0.33 0.26 16 32 H 0.09 0.93 7.40 -51.93 -0.38 0.55 16 33 H 0.11 0.89 8.11 -51.93 -0.42 0.47 16 34 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 36 H 0.13 0.42 8.06 -52.48 -0.42 -0.01 16 37 H 0.12 0.58 8.06 -52.48 -0.42 0.15 16 38 H 0.41 3.12 8.96 -40.82 -0.37 2.76 16 39 H 0.12 2.65 7.22 -51.93 -0.37 2.28 16 40 H 0.03 0.72 6.83 -51.92 -0.35 0.36 16 41 H 0.08 2.04 7.17 -51.93 -0.37 1.67 16 42 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.03 0.69 6.84 -51.93 -0.36 0.34 16 LS Contribution 361.30 15.07 5.44 5.44 Total: -1.00 -36.69 361.30 -9.84 -46.53 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.79 Total: 1.06 kcal Atomic # 6 Polarization: 13.11 SS G_CDS: -3.37 Total: 9.74 kcal Atomic # 7 Polarization: -60.20 SS G_CDS: -0.63 Total: -60.82 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.48 Total: -19.39 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.69 -9.84 -46.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044364288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.245 kcal (2) G-P(sol) polarization free energy of solvation -36.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds