Wall clock time and date at job start Tue Mar 31 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46510 * 109.45429 * 2 1 4 4 C 1.34773 * 119.99689 * 60.00513 * 3 2 1 5 5 O 1.21582 * 120.00289 * 359.97438 * 4 3 2 6 6 C 1.47504 * 119.99481 * 179.97438 * 4 3 2 7 7 C 1.36889 * 120.60737 * 179.97438 * 6 4 3 8 8 C 1.40133 * 119.25728 * 179.97438 * 7 6 4 9 9 N 1.31142 * 120.46351 * 359.97438 * 8 7 6 10 10 C 1.33698 * 121.18705 * 0.02562 * 9 8 7 11 11 C 1.39060 * 132.56208 * 179.97438 * 10 9 8 12 12 C 1.38498 * 107.67262 * 180.02562 * 11 10 9 13 13 N 1.31527 * 109.03929 * 359.97438 * 12 11 10 14 14 N 1.37298 * 120.63544 * 359.97438 * 10 9 8 15 15 C 1.53037 * 109.46403 * 119.97302 * 2 1 3 16 16 C 1.53165 * 109.32518 * 181.39184 * 15 2 1 17 17 N 1.46927 * 108.76976 * 305.35089 * 16 15 2 18 18 C 1.36932 * 120.63498 * 233.64031 * 17 16 15 19 19 H 1.07998 * 120.00293 * 151.80718 * 18 17 16 20 20 C 1.38811 * 119.99621 * 331.80215 * 18 17 16 21 21 N 1.31613 * 120.00334 * 343.09182 * 20 18 17 22 22 Si 1.86803 * 119.99912 * 163.08693 * 20 18 17 23 23 H 1.48498 * 109.47415 * 90.00049 * 22 20 18 24 24 H 1.48500 * 109.47387 * 210.00197 * 22 20 18 25 25 H 1.48508 * 109.47091 * 330.00415 * 22 20 18 26 26 C 1.46926 * 118.73312 * 53.61021 * 17 16 15 27 27 C 1.53042 * 109.46263 * 240.03403 * 2 1 3 28 28 H 1.08994 * 109.47369 * 60.00135 * 1 2 3 29 29 H 1.09007 * 109.46246 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47323 * 299.99201 * 1 2 3 31 31 H 0.96997 * 120.00013 * 240.00270 * 3 2 1 32 32 H 1.08004 * 120.37132 * 0.02562 * 7 6 4 33 33 H 1.07998 * 119.77030 * 180.02562 * 8 7 6 34 34 H 1.08006 * 126.16297 * 0.02562 * 11 10 9 35 35 H 1.08005 * 125.47886 * 179.73724 * 12 11 10 36 36 H 1.09003 * 109.49796 * 301.32483 * 15 2 1 37 37 H 1.08996 * 109.49609 * 61.42561 * 15 2 1 38 38 H 1.09003 * 109.58726 * 185.57293 * 16 15 2 39 39 H 1.08996 * 109.71218 * 65.21331 * 16 15 2 40 40 H 0.96999 * 120.00285 * 180.02562 * 21 20 18 41 41 H 1.09004 * 109.58744 * 186.60748 * 26 17 16 42 42 H 1.09004 * 109.70334 * 66.25158 * 26 17 16 43 43 H 1.09004 * 109.49447 * 298.57481 * 27 2 1 44 44 H 1.08995 * 109.49790 * 58.63493 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6922 2.2111 1.0109 5 8 0.9930 1.8134 1.9226 6 6 2.1839 3.6018 1.0111 7 6 1.8603 4.4553 2.0312 8 6 2.3434 5.7704 2.0031 9 7 3.0976 6.1807 1.0119 10 6 3.4249 5.3625 0.0063 11 6 4.1915 5.5410 -1.1400 12 6 4.1933 4.3432 -1.8354 13 7 3.4753 3.4619 -1.1737 14 7 2.9774 4.0647 -0.0136 15 6 2.0400 -0.7209 1.2499 16 6 3.5712 -0.6887 1.2644 17 7 4.0678 -1.2490 0.0002 18 6 4.9755 -2.2743 0.0003 19 1 5.0028 -2.9714 -0.8241 20 6 5.8605 -2.4176 1.0600 21 7 6.0657 -1.4140 1.8864 22 14 6.7604 -4.0349 1.3133 23 1 8.0447 -4.0087 0.5683 24 1 7.0313 -4.2293 2.7603 25 1 5.9204 -5.1524 0.8124 26 6 3.5714 -0.6888 -1.2641 27 6 2.0399 -0.7207 -1.2501 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3632 -1.0278 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 2.5755 1.6989 -0.7275 32 1 1.2403 4.1187 2.8490 33 1 2.0935 6.4507 2.8039 34 1 4.6950 6.4499 -1.4349 35 1 4.6993 4.1631 -2.7724 36 1 1.6575 -0.2208 2.1398 37 1 1.6978 -1.7557 1.2381 38 1 3.9414 -1.2847 2.0986 39 1 3.9163 0.3399 1.3687 40 1 6.6844 -1.5140 2.6267 41 1 3.9416 -1.2848 -2.0983 42 1 3.9144 0.3405 -1.3697 43 1 1.6977 -1.7556 -1.2383 44 1 1.6569 -0.2210 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045458270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:52 Heat of formation + Delta-G solvation = 118.858226 kcal Electronic energy + Delta-G solvation = -29364.887266 eV Core-core repulsion = 25513.647892 eV Total energy + Delta-G solvation = -3851.239373 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.48652 -40.17634 -38.30951 -37.37066 -34.50091 -34.26932 -31.93116 -31.17703 -30.78829 -29.92022 -29.27196 -27.46518 -25.80109 -24.10649 -23.57435 -22.64686 -22.29538 -21.04217 -20.56411 -19.01045 -18.27939 -17.59132 -17.13099 -16.72561 -16.32136 -15.54777 -15.04888 -14.88650 -14.69584 -14.41563 -14.00005 -13.83790 -13.63381 -13.41668 -13.28611 -13.14316 -13.10976 -12.81925 -12.43172 -11.99895 -11.66989 -11.48027 -11.38010 -11.30317 -11.08975 -10.94788 -10.71490 -10.49432 -10.28366 -10.25856 -9.98783 -9.86591 -9.69656 -9.60500 -9.30337 -8.72481 -8.45557 -8.11633 -6.65100 -5.77486 -3.20396 -0.02092 0.66938 1.78159 2.33672 2.86001 3.04016 3.37393 3.37695 3.44550 3.46788 3.64060 3.91277 4.36946 4.50268 4.67220 4.85199 5.04342 5.21266 5.23996 5.31664 5.35638 5.40879 5.48522 5.57385 5.60054 5.77661 5.91854 5.96416 6.09081 6.15580 6.21002 6.29777 6.37946 6.40277 6.44625 6.66926 6.69359 6.74799 6.92891 6.97295 7.20560 7.35461 7.38482 7.67440 7.75672 7.80405 8.26730 8.45827 9.22126 9.85771 10.42998 11.30748 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.013547 B = 0.004197 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.309719 B = 6669.309054 C = 7238.275785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.179 3.821 3 N -0.683 5.683 4 C 0.557 3.443 5 O -0.518 6.518 6 C 0.152 3.848 7 C -0.161 4.161 8 C 0.177 3.823 9 N -0.452 5.452 10 C 0.254 3.746 11 C -0.256 4.256 12 C 0.097 3.903 13 N -0.311 5.311 14 N -0.302 5.302 15 C -0.152 4.152 16 C 0.178 3.822 17 N -0.589 5.589 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.902 5.902 22 Si 0.901 3.099 23 H -0.287 1.287 24 H -0.290 1.290 25 H -0.279 1.279 26 C 0.143 3.857 27 C -0.137 4.137 28 H 0.047 0.953 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.416 0.584 32 H 0.180 0.820 33 H 0.188 0.812 34 H 0.165 0.835 35 H 0.202 0.798 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.085 0.915 39 H 0.012 0.988 40 H 0.253 0.747 41 H 0.056 0.944 42 H 0.018 0.982 43 H 0.077 0.923 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.795 13.857 -3.888 17.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 N -0.338 5.338 4 C 0.340 3.660 5 O -0.395 6.395 6 C 0.034 3.966 7 C -0.186 4.186 8 C -0.008 4.008 9 N -0.163 5.163 10 C 0.026 3.974 11 C -0.287 4.287 12 C -0.080 4.080 13 N -0.137 5.137 14 N -0.076 5.076 15 C -0.192 4.192 16 C 0.052 3.948 17 N -0.312 5.312 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.546 5.546 22 Si 0.731 3.269 23 H -0.214 1.214 24 H -0.216 1.216 25 H -0.205 1.205 26 C 0.017 3.983 27 C -0.176 4.176 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.258 0.742 32 H 0.198 0.802 33 H 0.205 0.795 34 H 0.182 0.818 35 H 0.219 0.781 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.103 0.897 39 H 0.030 0.970 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.036 0.964 43 H 0.096 0.904 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.108 13.079 -3.466 16.889 hybrid contribution 0.926 -0.551 -0.076 1.080 sum -9.182 12.529 -3.542 15.932 Atomic orbital electron populations 1.22236 0.95075 1.02259 1.02345 1.20441 0.92836 0.79508 0.97805 1.46471 1.51055 1.11971 1.24289 1.17456 0.81636 0.83192 0.83736 1.90776 1.38028 1.75057 1.35592 1.21054 0.92193 0.96325 0.87058 1.22154 1.03438 0.93919 0.99127 1.23437 0.89061 0.93567 0.94719 1.67954 1.13758 1.33610 1.00995 1.20766 0.98795 0.81240 0.96579 1.21010 1.10661 1.01459 0.95564 1.23837 0.94741 0.90190 0.99224 1.77412 1.21065 1.20424 0.94785 1.47409 1.32856 1.11002 1.16320 1.22604 1.00960 0.99336 0.96280 1.20661 0.87128 0.96799 0.90178 1.44034 1.48343 1.39530 0.99304 1.19165 1.09697 1.02770 1.06652 0.91711 1.25045 0.97197 0.97376 0.99943 1.70041 1.37353 1.29066 1.18154 0.86322 0.79656 0.83820 0.77108 1.21434 1.21596 1.20460 1.20886 0.90302 0.96566 0.90591 1.22329 0.99922 1.00443 0.94921 0.93387 0.91770 0.90774 0.74165 0.80249 0.79530 0.81785 0.78141 0.91044 0.91724 0.89653 0.97013 0.93706 0.92544 0.96402 0.90403 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.45 8.40 37.16 0.31 -2.14 16 2 C 0.18 3.16 0.66 -131.77 -0.09 3.07 16 3 N -0.68 -12.02 4.10 -48.60 -0.20 -12.22 16 4 C 0.56 9.59 7.21 -12.49 -0.09 9.50 16 5 O -0.52 -9.39 12.57 5.29 0.07 -9.32 16 6 C 0.15 2.29 6.82 -81.98 -0.56 1.73 16 7 C -0.16 -1.82 9.61 -39.36 -0.38 -2.20 16 8 C 0.18 1.70 11.26 -17.14 -0.19 1.50 16 9 N -0.45 -5.67 10.44 -12.24 -0.13 -5.80 16 10 C 0.25 3.60 7.93 -155.56 -1.23 2.36 16 11 C -0.26 -3.11 10.91 -39.18 -0.43 -3.54 16 12 C 0.10 1.17 11.93 -17.59 -0.21 0.96 16 13 N -0.31 -4.79 9.92 30.46 0.30 -4.49 16 14 N -0.30 -4.66 3.94 -8.87 -0.03 -4.69 16 15 C -0.15 -3.12 4.66 -26.63 -0.12 -3.24 16 16 C 0.18 4.43 5.04 -3.72 -0.02 4.41 16 17 N -0.59 -14.87 2.99 -172.34 -0.52 -15.39 16 18 C -0.25 -6.99 9.58 -15.06 -0.14 -7.14 16 19 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 20 C 0.00 0.08 4.92 -17.43 -0.09 0.00 16 21 N -0.90 -26.74 11.20 55.49 0.62 -26.12 16 22 Si 0.90 21.91 29.59 -169.99 -5.03 16.88 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.14 3.00 6.24 -3.71 -0.02 2.98 16 27 C -0.14 -2.36 4.96 -26.61 -0.13 -2.49 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.90 8.14 -51.92 -0.42 0.47 16 30 H 0.07 1.20 6.16 -51.93 -0.32 0.88 16 31 H 0.42 7.34 4.30 -40.82 -0.18 7.17 16 32 H 0.18 1.64 7.65 -52.48 -0.40 1.24 16 33 H 0.19 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.16 1.55 8.06 -52.48 -0.42 1.13 16 35 H 0.20 1.60 8.06 -52.48 -0.42 1.17 16 36 H 0.07 1.48 6.20 -51.93 -0.32 1.16 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 38 H 0.09 2.39 6.06 -51.93 -0.31 2.08 16 39 H 0.01 0.32 7.74 -51.93 -0.40 -0.08 16 40 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 42 H 0.02 0.39 6.94 -51.93 -0.36 0.03 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 44 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 350.27 15.07 5.28 5.28 Total: -1.00 -33.78 350.27 -8.67 -42.45 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: -5.64 Total: 7.67 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -3.39 Total: 5.76 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: 0.05 Total: -68.71 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -33.78 -8.67 -42.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045458270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.308 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds