Wall clock time and date at job start Tue Mar 31 2020 05:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.45762 * 2 1 4 4 C 1.34769 * 120.00487 * 59.99714 * 3 2 1 5 5 O 1.21689 * 120.00056 * 0.02562 * 4 3 2 6 6 C 1.46806 * 120.00567 * 180.02562 * 4 3 2 7 7 C 1.40418 * 126.53685 * 0.40745 * 6 4 3 8 8 N 1.30976 * 108.76302 * 180.02562 * 7 6 4 9 9 N 1.39713 * 109.48980 * 359.76256 * 8 7 6 10 10 C 1.36353 * 133.19419 * 179.97438 * 9 8 7 11 11 C 1.35302 * 119.80784 * 180.02562 * 10 9 8 12 12 N 1.33244 * 121.27288 * 0.02562 * 11 10 9 13 13 C 1.31416 * 121.07635 * 359.93668 * 12 11 10 14 14 C 1.36819 * 107.96627 * 359.97438 * 9 8 7 15 15 C 1.53040 * 109.46125 * 119.96931 * 2 1 3 16 16 C 1.53160 * 109.32821 * 181.38824 * 15 2 1 17 17 N 1.46928 * 108.77106 * 305.35448 * 16 15 2 18 18 C 1.36929 * 120.63345 * 233.63713 * 17 16 15 19 19 H 1.08000 * 120.00416 * 151.81329 * 18 17 16 20 20 C 1.38820 * 120.00152 * 331.80181 * 18 17 16 21 21 N 1.31621 * 119.99514 * 343.09126 * 20 18 17 22 22 Si 1.86789 * 120.00261 * 163.08031 * 20 18 17 23 23 H 1.48507 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47214 * 120.00569 * 22 20 18 25 25 H 1.48499 * 109.47553 * 240.00792 * 22 20 18 26 26 C 1.46924 * 118.73630 * 53.60570 * 17 16 15 27 27 C 1.53034 * 109.46164 * 240.02587 * 2 1 3 28 28 H 1.09007 * 109.47224 * 60.00516 * 1 2 3 29 29 H 1.09006 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47419 * 300.00185 * 1 2 3 31 31 H 0.97002 * 119.99431 * 239.99652 * 3 2 1 32 32 H 1.08001 * 125.62196 * 359.80699 * 7 6 4 33 33 H 1.08001 * 120.09831 * 359.97438 * 10 9 8 34 34 H 1.07993 * 119.36190 * 179.97438 * 11 10 9 35 35 H 1.07998 * 120.17567 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.49817 * 301.32401 * 15 2 1 37 37 H 1.08998 * 109.49495 * 61.42300 * 15 2 1 38 38 H 1.09002 * 109.58967 * 185.56993 * 16 15 2 39 39 H 1.09000 * 109.71364 * 65.21031 * 16 15 2 40 40 H 0.96997 * 119.99553 * 179.97438 * 21 20 18 41 41 H 1.08999 * 109.58935 * 186.60771 * 26 17 16 42 42 H 1.09009 * 109.70320 * 66.25298 * 26 17 16 43 43 H 1.08999 * 109.49938 * 298.57637 * 27 2 1 44 44 H 1.08997 * 109.49987 * 58.64378 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0179 1.3813 0.0000 4 6 1.6922 2.2112 1.0107 5 8 0.9930 1.8130 1.9236 6 6 2.1807 3.5956 1.0104 7 6 2.9841 4.1984 0.0291 8 7 3.2135 5.4401 0.3769 9 7 2.5732 5.7107 1.5888 10 6 2.4918 6.8229 2.3734 11 6 1.7799 6.7841 3.5233 12 7 1.1514 5.6749 3.9107 13 6 1.2010 4.5792 3.1868 14 6 1.9264 4.5729 1.9876 15 6 2.0398 -0.7208 1.2500 16 6 3.5710 -0.6888 1.2646 17 7 4.0676 -1.2492 0.0004 18 6 4.9752 -2.2745 0.0006 19 1 5.0027 -2.9716 -0.8238 20 6 5.8603 -2.4178 1.0604 21 7 6.0655 -1.4141 1.8868 22 14 6.7599 -4.0351 1.3139 23 1 6.3572 -4.9966 0.2561 24 1 8.2248 -3.8036 1.2402 25 1 6.4130 -4.5910 2.6465 26 6 3.5714 -0.6891 -1.2639 27 6 2.0398 -0.7209 -1.2499 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.5756 1.6986 -0.7275 32 1 3.3550 3.7164 -0.8634 33 1 2.9948 7.7319 2.0783 34 1 1.7205 7.6690 4.1395 35 1 0.6857 3.6883 3.5145 36 1 1.6573 -0.2207 2.1399 37 1 1.6976 -1.7556 1.2383 38 1 3.9411 -1.2847 2.0988 39 1 3.9163 0.3398 1.3688 40 1 6.6836 -1.5144 2.6275 41 1 3.9416 -1.2851 -2.0980 42 1 3.9144 0.3402 -1.3696 43 1 1.6976 -1.7557 -1.2381 44 1 1.6569 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045462569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:10 Heat of formation + Delta-G solvation = 111.366074 kcal Electronic energy + Delta-G solvation = -28746.432720 eV Core-core repulsion = 24894.868462 eV Total energy + Delta-G solvation = -3851.564257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.66535 -39.92994 -38.50704 -37.18105 -34.37223 -33.84996 -32.03220 -31.51145 -30.94823 -29.86404 -29.13942 -27.39677 -25.03269 -24.37768 -23.91892 -22.74351 -22.23940 -21.11792 -20.26629 -18.75308 -18.55542 -17.50741 -17.09346 -16.57716 -16.28456 -15.74515 -15.25437 -14.87418 -14.69786 -14.45840 -13.98593 -13.78914 -13.65731 -13.38910 -13.21087 -13.19385 -13.17237 -12.95802 -12.33535 -11.83747 -11.58394 -11.39575 -11.34558 -11.19398 -10.97386 -10.91651 -10.71534 -10.33921 -10.23549 -10.20890 -10.04849 -9.94359 -9.73978 -9.52665 -9.10822 -8.58432 -8.43479 -8.05141 -6.63375 -5.75961 -3.19081 0.16708 0.60048 1.69005 1.99133 3.04807 3.38436 3.43556 3.46573 3.48243 3.68966 3.90746 3.94646 4.03627 4.51448 4.55459 4.69911 4.83852 5.09737 5.17248 5.23028 5.37281 5.39829 5.50946 5.56861 5.63798 5.90397 5.97423 6.01740 6.07102 6.15961 6.21354 6.23646 6.41205 6.49874 6.56860 6.68649 6.77196 6.85622 6.96073 7.04859 7.13832 7.34360 7.45962 7.75025 7.82825 7.95293 8.47879 8.61924 9.24199 9.87747 10.44287 11.31808 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.003516 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.113460 B = 7961.219928 C = 8629.368178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.187 3.813 3 N -0.704 5.704 4 C 0.599 3.401 5 O -0.545 6.545 6 C -0.262 4.262 7 C 0.115 3.885 8 N -0.304 5.304 9 N -0.250 5.250 10 C 0.062 3.938 11 C 0.025 3.975 12 N -0.448 5.448 13 C 0.173 3.827 14 C 0.091 3.909 15 C -0.151 4.151 16 C 0.178 3.822 17 N -0.591 5.591 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.900 5.900 22 Si 0.900 3.100 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.289 1.289 26 C 0.146 3.854 27 C -0.138 4.138 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.395 0.605 32 H 0.204 0.796 33 H 0.180 0.820 34 H 0.185 0.815 35 H 0.198 0.802 36 H 0.073 0.927 37 H 0.059 0.941 38 H 0.083 0.917 39 H 0.017 0.983 40 H 0.252 0.748 41 H 0.055 0.945 42 H 0.013 0.987 43 H 0.075 0.925 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.379 15.050 -2.419 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.102 3.898 3 N -0.354 5.354 4 C 0.387 3.613 5 O -0.425 6.425 6 C -0.280 4.280 7 C -0.063 4.063 8 N -0.127 5.127 9 N -0.018 5.018 10 C -0.067 4.067 11 C -0.117 4.117 12 N -0.160 5.160 13 C -0.006 4.006 14 C -0.032 4.032 15 C -0.191 4.191 16 C 0.052 3.948 17 N -0.314 5.314 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.195 4.195 21 N -0.544 5.544 22 Si 0.730 3.270 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.019 3.981 27 C -0.177 4.177 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.229 0.771 32 H 0.220 0.780 33 H 0.198 0.802 34 H 0.202 0.798 35 H 0.214 0.786 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.035 0.965 40 H 0.062 0.938 41 H 0.073 0.927 42 H 0.030 0.970 43 H 0.093 0.907 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.507 16.027 -1.286 19.207 hybrid contribution 1.142 -1.237 -0.828 1.876 sum -9.364 14.790 -2.114 17.633 Atomic orbital electron populations 1.22231 0.95364 1.01846 1.02379 1.20263 0.92584 0.79770 0.97211 1.45819 1.52999 1.12064 1.24496 1.16722 0.79638 0.82885 0.82099 1.90691 1.39169 1.76716 1.35880 1.19982 1.13117 0.96433 0.98504 1.24250 0.93083 0.90451 0.98555 1.77679 1.21468 1.18247 0.95333 1.46205 1.31029 1.08714 1.15809 1.22622 1.01720 0.90571 0.91794 1.22426 0.96572 0.98369 0.94287 1.68287 1.17498 0.98970 1.31211 1.23386 0.93028 0.97488 0.86724 1.20386 0.97499 0.87857 0.97466 1.22577 1.00714 0.99078 0.96699 1.20678 0.87309 0.96953 0.89858 1.44069 1.48313 1.39554 0.99430 1.19205 1.09633 1.02816 1.06625 0.91747 1.25039 0.97226 0.97321 0.99955 1.70053 1.37386 1.28934 1.18075 0.86265 0.79176 0.83773 0.77794 1.20271 1.21823 1.21581 1.20855 0.90479 0.96136 0.90629 1.22340 0.99638 1.00568 0.95175 0.93545 0.92291 0.90644 0.77078 0.77964 0.80250 0.79820 0.78563 0.90870 0.92246 0.89909 0.96523 0.93765 0.92688 0.96957 0.90665 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.33 8.40 37.15 0.31 -2.02 16 2 C 0.19 3.05 0.66 -131.78 -0.09 2.96 16 3 N -0.70 -10.66 4.09 -48.83 -0.20 -10.86 16 4 C 0.60 9.61 7.21 -12.80 -0.09 9.52 16 5 O -0.55 -9.82 12.02 5.20 0.06 -9.75 16 6 C -0.26 -3.77 6.16 -104.75 -0.65 -4.41 16 7 C 0.12 1.45 11.44 -17.10 -0.20 1.25 16 8 N -0.30 -4.03 12.60 30.76 0.39 -3.64 16 9 N -0.25 -3.14 3.91 -10.50 -0.04 -3.18 16 10 C 0.06 0.55 11.24 -16.59 -0.19 0.36 16 11 C 0.03 0.21 11.07 -17.99 -0.20 0.01 16 12 N -0.45 -5.11 10.44 -13.26 -0.14 -5.25 16 13 C 0.17 2.19 10.98 -17.01 -0.19 2.00 16 14 C 0.09 1.25 6.77 -84.06 -0.57 0.68 16 15 C -0.15 -3.00 4.66 -26.63 -0.12 -3.12 16 16 C 0.18 4.26 5.04 -3.73 -0.02 4.24 16 17 N -0.59 -14.31 2.99 -172.33 -0.52 -14.83 16 18 C -0.25 -6.84 9.58 -15.06 -0.14 -6.98 16 19 H 0.06 1.71 7.88 -52.49 -0.41 1.30 16 20 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 21 N -0.90 -26.27 11.20 55.49 0.62 -25.65 16 22 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.15 2.81 6.24 -3.71 -0.02 2.79 16 27 C -0.14 -2.17 4.96 -26.61 -0.13 -2.31 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 1.21 6.16 -51.93 -0.32 0.89 16 31 H 0.39 5.23 6.19 -40.82 -0.25 4.98 16 32 H 0.20 1.87 7.46 -52.49 -0.39 1.48 16 33 H 0.18 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.18 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.20 2.44 7.20 -52.49 -0.38 2.06 16 36 H 0.07 1.51 6.20 -51.93 -0.32 1.18 16 37 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 38 H 0.08 2.29 6.06 -51.93 -0.31 1.97 16 39 H 0.02 0.43 7.74 -51.93 -0.40 0.02 16 40 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 41 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 42 H 0.01 0.23 6.94 -51.92 -0.36 -0.13 16 43 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -33.51 352.41 -7.58 -41.09 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.66 Total: 5.12 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: -2.38 Total: 4.96 kcal Atomic # 7 Polarization: -63.52 SS G_CDS: 0.11 Total: -63.41 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.06 Total: -9.75 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -33.51 -7.58 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045462569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.454 kcal (2) G-P(sol) polarization free energy of solvation -33.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 118.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds