Wall clock time and date at job start Tue Mar 31 2020 05:45:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.45762 * 2 1 4 4 C 1.34769 * 120.00487 * 59.99714 * 3 2 1 5 5 O 1.21689 * 120.00056 * 0.02562 * 4 3 2 6 6 C 1.46806 * 120.00567 * 180.02562 * 4 3 2 7 7 C 1.40418 * 126.53685 * 0.40745 * 6 4 3 8 8 N 1.30976 * 108.76302 * 180.02562 * 7 6 4 9 9 N 1.39713 * 109.48980 * 359.76256 * 8 7 6 10 10 C 1.36353 * 133.19419 * 179.97438 * 9 8 7 11 11 C 1.35302 * 119.80784 * 180.02562 * 10 9 8 12 12 N 1.33244 * 121.27288 * 0.02562 * 11 10 9 13 13 C 1.31416 * 121.07635 * 359.93668 * 12 11 10 14 14 C 1.36819 * 107.96627 * 359.97438 * 9 8 7 15 15 C 1.53040 * 109.46125 * 119.96931 * 2 1 3 16 16 C 1.53160 * 109.32821 * 181.38824 * 15 2 1 17 17 N 1.46928 * 108.77106 * 305.35448 * 16 15 2 18 18 C 1.36929 * 120.63345 * 233.63713 * 17 16 15 19 19 H 1.08000 * 120.00416 * 151.81329 * 18 17 16 20 20 C 1.38820 * 120.00152 * 331.80181 * 18 17 16 21 21 N 1.31621 * 119.99514 * 343.09126 * 20 18 17 22 22 Si 1.86789 * 120.00261 * 163.08031 * 20 18 17 23 23 H 1.48507 * 109.47234 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47214 * 120.00569 * 22 20 18 25 25 H 1.48499 * 109.47553 * 240.00792 * 22 20 18 26 26 C 1.46924 * 118.73630 * 53.60570 * 17 16 15 27 27 C 1.53034 * 109.46164 * 240.02587 * 2 1 3 28 28 H 1.09007 * 109.47224 * 60.00516 * 1 2 3 29 29 H 1.09006 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47419 * 300.00185 * 1 2 3 31 31 H 0.97002 * 119.99431 * 239.99652 * 3 2 1 32 32 H 1.08001 * 125.62196 * 359.80699 * 7 6 4 33 33 H 1.08001 * 120.09831 * 359.97438 * 10 9 8 34 34 H 1.07993 * 119.36190 * 179.97438 * 11 10 9 35 35 H 1.07998 * 120.17567 * 180.02562 * 13 12 11 36 36 H 1.09004 * 109.49817 * 301.32401 * 15 2 1 37 37 H 1.08998 * 109.49495 * 61.42300 * 15 2 1 38 38 H 1.09002 * 109.58967 * 185.56993 * 16 15 2 39 39 H 1.09000 * 109.71364 * 65.21031 * 16 15 2 40 40 H 0.96997 * 119.99553 * 179.97438 * 21 20 18 41 41 H 1.08999 * 109.58935 * 186.60771 * 26 17 16 42 42 H 1.09009 * 109.70320 * 66.25298 * 26 17 16 43 43 H 1.08999 * 109.49938 * 298.57637 * 27 2 1 44 44 H 1.08997 * 109.49987 * 58.64378 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0179 1.3813 0.0000 4 6 1.6922 2.2112 1.0107 5 8 0.9930 1.8130 1.9236 6 6 2.1807 3.5956 1.0104 7 6 2.9841 4.1984 0.0291 8 7 3.2135 5.4401 0.3769 9 7 2.5732 5.7107 1.5888 10 6 2.4918 6.8229 2.3734 11 6 1.7799 6.7841 3.5233 12 7 1.1514 5.6749 3.9107 13 6 1.2010 4.5792 3.1868 14 6 1.9264 4.5729 1.9876 15 6 2.0398 -0.7208 1.2500 16 6 3.5710 -0.6888 1.2646 17 7 4.0676 -1.2492 0.0004 18 6 4.9752 -2.2745 0.0006 19 1 5.0027 -2.9716 -0.8238 20 6 5.8603 -2.4178 1.0604 21 7 6.0655 -1.4141 1.8868 22 14 6.7599 -4.0351 1.3139 23 1 6.3572 -4.9966 0.2561 24 1 8.2248 -3.8036 1.2402 25 1 6.4130 -4.5910 2.6465 26 6 3.5714 -0.6891 -1.2639 27 6 2.0398 -0.7209 -1.2499 28 1 -0.3634 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 2.5756 1.6986 -0.7275 32 1 3.3550 3.7164 -0.8634 33 1 2.9948 7.7319 2.0783 34 1 1.7205 7.6690 4.1395 35 1 0.6857 3.6883 3.5145 36 1 1.6573 -0.2207 2.1399 37 1 1.6976 -1.7556 1.2383 38 1 3.9411 -1.2847 2.0988 39 1 3.9163 0.3398 1.3688 40 1 6.6836 -1.5144 2.6275 41 1 3.9416 -1.2851 -2.0980 42 1 3.9144 0.3402 -1.3696 43 1 1.6976 -1.7557 -1.2381 44 1 1.6569 -0.2212 -2.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045462569.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:09 Heat of formation + Delta-G solvation = 88.642986 kcal Electronic energy + Delta-G solvation = -28747.418067 eV Core-core repulsion = 24894.868462 eV Total energy + Delta-G solvation = -3852.549605 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.58743 -41.23398 -39.44015 -38.61731 -36.05425 -34.78090 -33.60633 -32.49006 -32.43963 -31.54023 -30.12324 -29.01809 -25.95579 -25.88604 -25.20522 -23.87962 -23.69960 -22.63632 -21.53015 -20.13626 -19.60128 -18.78526 -18.30874 -17.89007 -17.23517 -16.81893 -16.66962 -16.13233 -16.07713 -15.74766 -15.56262 -15.19512 -15.01005 -14.80587 -14.61598 -14.38369 -14.05330 -14.03039 -13.92255 -13.23764 -13.16769 -12.90584 -12.81646 -12.56187 -12.49833 -12.38391 -12.15411 -11.97988 -11.91170 -11.70664 -11.28812 -11.24545 -11.09761 -10.97732 -10.51369 -10.48346 -9.89714 -8.97400 -8.62154 -7.84234 -5.29299 -0.71920 -0.29377 0.83340 0.98567 1.45352 1.48064 1.57755 2.14924 2.31146 2.52669 2.57587 2.95568 3.13251 3.24647 3.30986 3.67498 3.74646 3.81813 3.94161 4.05161 4.14443 4.21522 4.28455 4.38392 4.50888 4.55804 4.74901 4.78082 4.89393 4.95272 5.02228 5.03416 5.10097 5.12382 5.21001 5.29845 5.36610 5.41575 5.46037 5.56348 5.67124 5.74757 5.85526 6.10976 6.41695 6.49588 6.76931 7.17965 7.42633 7.91348 8.42290 9.21309 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.015238 B = 0.003516 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.113460 B = 7961.219928 C = 8629.368178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.190 3.810 3 N -0.700 5.700 4 C 0.597 3.403 5 O -0.574 6.574 6 C -0.296 4.296 7 C 0.123 3.877 8 N -0.322 5.322 9 N -0.252 5.252 10 C 0.067 3.933 11 C 0.030 3.970 12 N -0.451 5.451 13 C 0.147 3.853 14 C 0.081 3.919 15 C -0.139 4.139 16 C 0.194 3.806 17 N -0.608 5.608 18 C -0.256 4.256 19 H 0.070 0.930 20 C -0.053 4.053 21 N -0.936 5.936 22 Si 0.962 3.038 23 H -0.263 1.263 24 H -0.294 1.294 25 H -0.296 1.296 26 C 0.139 3.861 27 C -0.124 4.124 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.405 0.595 32 H 0.230 0.770 33 H 0.222 0.778 34 H 0.231 0.769 35 H 0.187 0.813 36 H 0.060 0.940 37 H 0.054 0.946 38 H 0.037 0.963 39 H -0.008 1.008 40 H 0.246 0.754 41 H 0.059 0.941 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.070 16.659 -4.072 20.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.104 3.896 3 N -0.351 5.351 4 C 0.386 3.614 5 O -0.455 6.455 6 C -0.314 4.314 7 C -0.055 4.055 8 N -0.145 5.145 9 N -0.019 5.019 10 C -0.062 4.062 11 C -0.112 4.112 12 N -0.163 5.163 13 C -0.030 4.030 14 C -0.042 4.042 15 C -0.179 4.179 16 C 0.068 3.932 17 N -0.331 5.331 18 C -0.387 4.387 19 H 0.088 0.912 20 C -0.248 4.248 21 N -0.582 5.582 22 Si 0.791 3.209 23 H -0.187 1.187 24 H -0.221 1.221 25 H -0.223 1.223 26 C 0.014 3.986 27 C -0.163 4.163 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.241 0.759 32 H 0.246 0.754 33 H 0.239 0.761 34 H 0.247 0.753 35 H 0.204 0.796 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.056 0.944 39 H 0.010 0.990 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.042 0.958 43 H 0.092 0.908 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -11.216 17.619 -3.001 21.101 hybrid contribution 1.355 -1.534 -0.236 2.061 sum -9.861 16.084 -3.237 19.142 Atomic orbital electron populations 1.22112 0.93468 1.02542 1.02683 1.20174 0.93910 0.80042 0.95432 1.45715 1.53136 1.11430 1.24771 1.16985 0.79140 0.83619 0.81687 1.90669 1.40536 1.77422 1.36883 1.19869 1.15431 0.95960 1.00162 1.24646 0.91932 0.90142 0.98792 1.77630 1.22384 1.18567 0.95935 1.46527 1.30317 1.09247 1.15818 1.23519 1.00863 0.90769 0.91047 1.23250 0.94968 0.98544 0.94470 1.68282 1.17429 0.99445 1.31116 1.23211 0.94502 0.98062 0.87264 1.20509 0.97655 0.88446 0.97632 1.22373 0.97518 0.99316 0.98648 1.20298 0.89730 0.94373 0.88779 1.44289 1.48171 1.39574 1.01079 1.19572 1.09214 1.03519 1.06371 0.91234 1.25771 0.98695 1.00119 1.00205 1.70216 1.38496 1.30838 1.18695 0.85285 0.77673 0.80484 0.77502 1.18713 1.22079 1.22267 1.21091 0.92797 0.96426 0.88274 1.22210 0.96672 1.00990 0.96401 0.91183 0.91379 0.92385 0.75909 0.75398 0.76145 0.75262 0.79621 0.92167 0.92713 0.94414 0.98989 0.94533 0.92263 0.95767 0.90828 0.88384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.11 8.40 71.98 0.60 -3.51 16 2 C 0.19 6.00 0.66 3.63 0.00 6.00 16 3 N -0.70 -20.77 4.09 -426.62 -1.75 -22.52 16 4 C 0.60 19.56 7.21 86.48 0.62 20.18 16 5 O -0.57 -21.61 12.02 -4.31 -0.05 -21.66 16 6 C -0.30 -8.64 6.16 -19.95 -0.12 -8.76 16 7 C 0.12 3.00 11.44 85.35 0.98 3.98 16 8 N -0.32 -8.13 12.60 -56.58 -0.71 -8.85 16 9 N -0.25 -5.99 3.91 -187.14 -0.73 -6.72 16 10 C 0.07 0.99 11.24 83.31 0.94 1.92 16 11 C 0.03 0.42 11.07 83.80 0.93 1.34 16 12 N -0.45 -9.82 10.44 -195.85 -2.05 -11.87 16 13 C 0.15 3.83 10.98 85.22 0.94 4.76 16 14 C 0.08 2.25 6.77 39.39 0.27 2.52 16 15 C -0.14 -5.66 4.66 30.66 0.14 -5.51 16 16 C 0.19 9.69 5.04 86.35 0.44 10.13 16 17 N -0.61 -29.68 2.99 -699.14 -2.09 -31.78 16 18 C -0.26 -13.95 9.58 84.04 0.81 -13.15 16 19 H 0.07 3.65 7.88 -2.91 -0.02 3.63 16 20 C -0.05 -2.98 4.92 84.86 0.42 -2.57 16 21 N -0.94 -56.80 11.20 21.65 0.24 -56.56 16 22 Si 0.96 45.50 29.59 68.60 2.03 47.53 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 24 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 25 H -0.30 -14.15 7.11 99.48 0.71 -13.45 16 26 C 0.14 5.15 6.24 86.36 0.54 5.69 16 27 C -0.12 -3.58 4.96 30.67 0.15 -3.43 16 28 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 30 H 0.06 1.83 6.16 -2.39 -0.01 1.81 16 31 H 0.40 10.13 6.19 -92.71 -0.57 9.56 16 32 H 0.23 3.88 7.46 -2.91 -0.02 3.85 16 33 H 0.22 1.31 8.06 -2.91 -0.02 1.28 16 34 H 0.23 0.92 8.06 -2.91 -0.02 0.89 16 35 H 0.19 5.06 7.20 -2.91 -0.02 5.03 16 36 H 0.06 2.60 6.20 -2.39 -0.01 2.59 16 37 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.04 2.20 6.06 -2.39 -0.01 2.19 16 39 H -0.01 -0.43 7.74 -2.39 -0.02 -0.45 16 40 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 41 H 0.06 2.13 7.93 -2.39 -0.02 2.12 16 42 H 0.02 0.85 6.94 -2.38 -0.02 0.84 16 43 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 Total: -1.00 -76.49 352.41 3.00 -73.49 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: 0.47 Total: 19.34 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 7.64 Total: 19.60 kcal Atomic # 7 Polarization: -131.21 SS G_CDS: -7.09 Total: -138.29 kcal Atomic # 8 Polarization: -21.61 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -76.49 3.00 -73.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045462569.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.132 kcal (2) G-P(sol) polarization free energy of solvation -76.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds