Wall clock time and date at job start Tue Mar 31 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.45665 * 2 1 4 4 C 1.34777 * 119.99723 * 60.00247 * 3 2 1 5 5 O 1.21626 * 120.00299 * 359.97438 * 4 3 2 6 6 C 1.47214 * 119.99413 * 179.97438 * 4 3 2 7 7 C 1.37759 * 119.93565 * 179.97438 * 6 4 3 8 8 C 1.39854 * 119.92785 * 179.97438 * 7 6 4 9 9 C 1.36300 * 119.82198 * 359.97438 * 8 7 6 10 10 C 1.40772 * 119.70775 * 0.25634 * 9 8 7 11 11 N 1.32817 * 132.73952 * 180.42047 * 10 9 8 12 12 C 1.32381 * 109.74261 * 179.54492 * 11 10 9 13 13 N 1.31392 * 109.61655 * 359.75127 * 12 11 10 14 14 N 1.36549 * 119.87561 * 359.48331 * 10 9 8 15 15 C 1.53041 * 109.46080 * 119.97027 * 2 1 3 16 16 C 1.53161 * 109.32714 * 181.38949 * 15 2 1 17 17 N 1.46921 * 108.76982 * 305.35508 * 16 15 2 18 18 C 1.36935 * 120.63690 * 233.63603 * 17 16 15 19 19 H 1.07993 * 120.00711 * 152.59953 * 18 17 16 20 20 C 1.38819 * 119.99311 * 332.59579 * 18 17 16 21 21 N 1.31619 * 119.99657 * 159.36333 * 20 18 17 22 22 Si 1.86795 * 120.00170 * 339.36680 * 20 18 17 23 23 H 1.48492 * 109.47608 * 92.90165 * 22 20 18 24 24 H 1.48505 * 109.46881 * 212.89924 * 22 20 18 25 25 H 1.48499 * 109.47299 * 332.89264 * 22 20 18 26 26 C 1.46931 * 118.73879 * 53.60993 * 17 16 15 27 27 C 1.53040 * 109.46240 * 240.03025 * 2 1 3 28 28 H 1.09003 * 109.47431 * 60.00403 * 1 2 3 29 29 H 1.09004 * 109.46963 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47478 * 299.99857 * 1 2 3 31 31 H 0.96996 * 119.99619 * 239.99809 * 3 2 1 32 32 H 1.07997 * 120.03537 * 0.02562 * 7 6 4 33 33 H 1.08004 * 120.08884 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.14814 * 179.97438 * 9 8 7 35 35 H 1.07997 * 125.18919 * 179.73118 * 12 11 10 36 36 H 1.09005 * 109.49664 * 301.32974 * 15 2 1 37 37 H 1.08999 * 109.49752 * 61.42316 * 15 2 1 38 38 H 1.09000 * 109.59092 * 185.57389 * 16 15 2 39 39 H 1.09004 * 109.71122 * 65.21453 * 16 15 2 40 40 H 0.96997 * 119.99938 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.59014 * 186.60570 * 26 17 16 42 42 H 1.09004 * 109.70347 * 66.24644 * 26 17 16 43 43 H 1.09005 * 109.49143 * 298.57333 * 27 2 1 44 44 H 1.08993 * 109.49772 * 58.63866 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6922 2.2111 1.0109 5 8 0.9927 1.8133 1.9229 6 6 2.1831 3.5990 1.0111 7 6 1.8489 4.4462 2.0447 8 6 2.3157 5.7646 2.0450 9 6 3.1007 6.2059 1.0218 10 6 3.4311 5.3319 -0.0310 11 7 4.1647 5.4793 -1.1284 12 6 4.1821 4.3449 -1.8104 13 7 3.4718 3.4387 -1.1774 14 7 2.9731 4.0456 -0.0164 15 6 2.0399 -0.7208 1.2500 16 6 3.5711 -0.6888 1.2646 17 7 4.0677 -1.2491 0.0005 18 6 4.9753 -2.2745 0.0005 19 1 5.0113 -2.9640 -0.8299 20 6 5.8494 -2.4274 1.0681 21 7 6.4254 -3.5908 1.2855 22 14 6.2080 -0.9824 2.1961 23 1 5.2788 -1.0155 3.3539 24 1 7.6083 -1.0699 2.6827 25 1 6.0224 0.2872 1.4485 26 6 3.5714 -0.6889 -1.2639 27 6 2.0399 -0.7208 -1.2500 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5756 1.6987 -0.7275 32 1 1.2278 4.0925 2.8543 33 1 2.0557 6.4309 2.8542 34 1 3.4638 7.2230 1.0165 35 1 4.7006 4.1883 -2.7447 36 1 1.6573 -0.2208 2.1398 37 1 1.6977 -1.7557 1.2383 38 1 3.9412 -1.2847 2.0988 39 1 3.9163 0.3399 1.3689 40 1 7.0358 -3.6978 2.0316 41 1 3.9418 -1.2849 -2.0981 42 1 3.9145 0.3404 -1.3696 43 1 1.6977 -1.7557 -1.2381 44 1 1.6570 -0.2211 -2.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045495067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:48 Heat of formation + Delta-G solvation = 124.851161 kcal Electronic energy + Delta-G solvation = -29560.666471 eV Core-core repulsion = 25709.686971 eV Total energy + Delta-G solvation = -3850.979500 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.99331 -40.41518 -38.39218 -37.28479 -34.72297 -34.10034 -31.96958 -31.27638 -31.06317 -30.45957 -30.13935 -27.74534 -25.29547 -23.94799 -23.76553 -23.09068 -22.84051 -21.35731 -20.70861 -19.05413 -18.24632 -17.85717 -17.07802 -16.71994 -16.58077 -16.06787 -15.30074 -15.23459 -14.87634 -14.43558 -14.33854 -14.06544 -13.70243 -13.58304 -13.36001 -13.09323 -13.01218 -12.53248 -12.32990 -12.11717 -12.11370 -11.95155 -11.71861 -11.54355 -11.39787 -11.27393 -10.82690 -10.59189 -10.47753 -10.28115 -10.09106 -9.90795 -9.78213 -9.56855 -9.40217 -8.94469 -8.63686 -8.54411 -6.95807 -5.94787 -3.29657 -0.09141 0.59955 1.66199 2.17031 2.77896 2.99016 3.21905 3.32932 3.47814 3.51680 3.61999 3.81992 4.39328 4.43788 4.52716 4.53708 4.82331 4.98023 5.02254 5.05776 5.20772 5.29143 5.37084 5.44432 5.56403 5.76660 5.78198 5.82154 5.88116 5.97015 6.00394 6.05941 6.14270 6.15037 6.25058 6.28489 6.47178 6.49737 6.56763 6.64288 6.69732 6.76835 6.94998 7.56043 7.68956 7.96994 8.16737 8.33092 8.94829 9.73100 10.11642 11.21322 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.004872 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.541782 B = 5745.589882 C = 6288.566716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.179 3.821 3 N -0.692 5.692 4 C 0.558 3.442 5 O -0.522 6.522 6 C 0.094 3.906 7 C -0.086 4.086 8 C -0.069 4.069 9 C -0.084 4.084 10 C 0.277 3.723 11 N -0.541 5.541 12 C 0.249 3.751 13 N -0.344 5.344 14 N -0.274 5.274 15 C -0.144 4.144 16 C 0.133 3.867 17 N -0.604 5.604 18 C -0.258 4.258 19 H 0.087 0.913 20 C 0.026 3.974 21 N -0.908 5.908 22 Si 0.881 3.119 23 H -0.289 1.289 24 H -0.303 1.303 25 H -0.275 1.275 26 C 0.147 3.853 27 C -0.137 4.137 28 H 0.049 0.951 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.415 0.585 32 H 0.175 0.825 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.231 0.769 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.071 0.929 39 H 0.017 0.983 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.022 0.978 43 H 0.082 0.918 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.560 19.705 -1.915 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.094 3.906 3 N -0.347 5.347 4 C 0.341 3.659 5 O -0.399 6.399 6 C -0.017 4.017 7 C -0.109 4.109 8 C -0.095 4.095 9 C -0.106 4.106 10 C 0.023 3.977 11 N -0.271 5.271 12 C -0.051 4.051 13 N -0.176 5.176 14 N -0.052 5.052 15 C -0.184 4.184 16 C 0.007 3.993 17 N -0.327 5.327 18 C -0.386 4.386 19 H 0.104 0.896 20 C -0.173 4.173 21 N -0.551 5.551 22 Si 0.712 3.288 23 H -0.217 1.217 24 H -0.232 1.232 25 H -0.200 1.200 26 C 0.021 3.979 27 C -0.177 4.177 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.258 0.742 32 H 0.192 0.808 33 H 0.178 0.822 34 H 0.180 0.820 35 H 0.247 0.753 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.089 0.911 39 H 0.035 0.965 40 H 0.072 0.928 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.101 0.899 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -11.735 18.779 -1.772 22.214 hybrid contribution 0.676 0.979 0.454 1.273 sum -11.059 19.757 -1.317 22.680 Atomic orbital electron populations 1.22219 0.94624 1.02463 1.02528 1.20413 0.93269 0.79535 0.97354 1.46530 1.51544 1.12031 1.24603 1.17466 0.81421 0.83454 0.83553 1.90783 1.38107 1.75364 1.35686 1.20828 0.95978 0.96523 0.88409 1.21518 0.99861 0.92580 0.96956 1.21279 0.94747 0.95305 0.98159 1.20528 0.99202 1.00072 0.90784 1.21861 0.94841 0.84888 0.96068 1.70852 1.24075 1.26486 1.05700 1.26203 0.94076 0.85362 0.99467 1.78062 1.22868 1.20799 0.95914 1.47903 1.31396 1.10360 1.15503 1.22424 0.98492 1.00428 0.97066 1.21216 0.91643 0.96370 0.90067 1.44339 1.48905 1.40213 0.99277 1.18927 1.09651 1.02573 1.07466 0.89582 1.25239 0.97426 0.96515 0.98148 1.69828 1.32721 1.21893 1.30652 0.86985 0.76191 0.84905 0.80749 1.21679 1.23159 1.20037 1.20907 0.90589 0.96624 0.89815 1.22324 0.99431 1.00873 0.95058 0.93183 0.91592 0.90676 0.74188 0.80758 0.82249 0.82028 0.75334 0.90578 0.90696 0.91095 0.96482 0.92801 0.91540 0.96018 0.89933 0.92103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.30 8.40 37.16 0.31 -1.98 16 2 C 0.18 2.99 0.66 -131.77 -0.09 2.90 16 3 N -0.69 -11.44 4.10 -48.69 -0.20 -11.64 16 4 C 0.56 8.94 7.19 -12.61 -0.09 8.85 16 5 O -0.52 -8.89 12.50 5.25 0.07 -8.82 16 6 C 0.09 1.28 6.80 -82.05 -0.56 0.72 16 7 C -0.09 -0.82 9.58 -39.15 -0.38 -1.20 16 8 C -0.07 -0.46 10.04 -39.67 -0.40 -0.86 16 9 C -0.08 -0.70 10.09 -39.32 -0.40 -1.10 16 10 C 0.28 3.46 7.88 -156.38 -1.23 2.23 16 11 N -0.54 -7.13 11.24 -13.99 -0.16 -7.28 16 12 C 0.25 3.08 12.98 -91.99 -1.19 1.88 16 13 N -0.34 -5.03 9.99 29.25 0.29 -4.74 16 14 N -0.27 -3.87 3.92 -8.82 -0.03 -3.90 16 15 C -0.14 -2.81 4.66 -26.63 -0.12 -2.93 16 16 C 0.13 3.09 3.95 -3.73 -0.01 3.07 16 17 N -0.60 -14.61 2.77 -172.33 -0.48 -15.09 16 18 C -0.26 -7.30 10.04 -15.06 -0.15 -7.45 16 19 H 0.09 2.57 8.05 -52.49 -0.42 2.14 16 20 C 0.03 0.76 5.23 -17.43 -0.09 0.66 16 21 N -0.91 -28.25 13.97 55.49 0.78 -27.47 16 22 Si 0.88 23.49 24.34 -169.99 -4.14 19.35 16 23 H -0.29 -7.54 6.62 56.52 0.37 -7.16 16 24 H -0.30 -8.15 7.11 56.52 0.40 -7.75 16 25 H -0.28 -7.39 6.64 56.52 0.38 -7.01 16 26 C 0.15 2.91 6.24 -3.71 -0.02 2.88 16 27 C -0.14 -2.25 4.96 -26.61 -0.13 -2.38 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.15 6.16 -51.93 -0.32 0.83 16 31 H 0.42 6.86 4.21 -40.82 -0.17 6.69 16 32 H 0.18 1.41 7.59 -52.49 -0.40 1.02 16 33 H 0.16 0.41 8.06 -52.48 -0.42 -0.01 16 34 H 0.16 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.23 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.08 1.48 6.20 -51.93 -0.32 1.16 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 1.82 4.50 -51.93 -0.23 1.59 16 39 H 0.02 0.42 6.67 -51.93 -0.35 0.07 16 40 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 41 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 42 H 0.02 0.43 6.94 -51.93 -0.36 0.07 16 43 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 343.34 15.07 5.17 5.17 Total: -1.00 -35.43 343.34 -8.81 -44.24 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -5.56 Total: 4.88 kcal Atomic # 6 Polarization: 9.85 SS G_CDS: -4.56 Total: 5.29 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: 0.20 Total: -70.12 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: 0.07 Total: -8.82 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.14 Total: 19.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -35.43 -8.81 -44.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045495067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 169.094 kcal (2) G-P(sol) polarization free energy of solvation -35.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 133.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds