Wall clock time and date at job start Tue Mar 31 2020 05:44:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46507 * 109.45665 * 2 1 4 4 C 1.34777 * 119.99723 * 60.00247 * 3 2 1 5 5 O 1.21626 * 120.00299 * 359.97438 * 4 3 2 6 6 C 1.47214 * 119.99413 * 179.97438 * 4 3 2 7 7 C 1.37759 * 119.93565 * 179.97438 * 6 4 3 8 8 C 1.39854 * 119.92785 * 179.97438 * 7 6 4 9 9 C 1.36300 * 119.82198 * 359.97438 * 8 7 6 10 10 C 1.40772 * 119.70775 * 0.25634 * 9 8 7 11 11 N 1.32817 * 132.73952 * 180.42047 * 10 9 8 12 12 C 1.32381 * 109.74261 * 179.54492 * 11 10 9 13 13 N 1.31392 * 109.61655 * 359.75127 * 12 11 10 14 14 N 1.36549 * 119.87561 * 359.48331 * 10 9 8 15 15 C 1.53041 * 109.46080 * 119.97027 * 2 1 3 16 16 C 1.53161 * 109.32714 * 181.38949 * 15 2 1 17 17 N 1.46921 * 108.76982 * 305.35508 * 16 15 2 18 18 C 1.36935 * 120.63690 * 233.63603 * 17 16 15 19 19 H 1.07993 * 120.00711 * 152.59953 * 18 17 16 20 20 C 1.38819 * 119.99311 * 332.59579 * 18 17 16 21 21 N 1.31619 * 119.99657 * 159.36333 * 20 18 17 22 22 Si 1.86795 * 120.00170 * 339.36680 * 20 18 17 23 23 H 1.48492 * 109.47608 * 92.90165 * 22 20 18 24 24 H 1.48505 * 109.46881 * 212.89924 * 22 20 18 25 25 H 1.48499 * 109.47299 * 332.89264 * 22 20 18 26 26 C 1.46931 * 118.73879 * 53.60993 * 17 16 15 27 27 C 1.53040 * 109.46240 * 240.03025 * 2 1 3 28 28 H 1.09003 * 109.47431 * 60.00403 * 1 2 3 29 29 H 1.09004 * 109.46963 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47478 * 299.99857 * 1 2 3 31 31 H 0.96996 * 119.99619 * 239.99809 * 3 2 1 32 32 H 1.07997 * 120.03537 * 0.02562 * 7 6 4 33 33 H 1.08004 * 120.08884 * 180.02562 * 8 7 6 34 34 H 1.08001 * 120.14814 * 179.97438 * 9 8 7 35 35 H 1.07997 * 125.18919 * 179.73118 * 12 11 10 36 36 H 1.09005 * 109.49664 * 301.32974 * 15 2 1 37 37 H 1.08999 * 109.49752 * 61.42316 * 15 2 1 38 38 H 1.09000 * 109.59092 * 185.57389 * 16 15 2 39 39 H 1.09004 * 109.71122 * 65.21453 * 16 15 2 40 40 H 0.96997 * 119.99938 * 180.02562 * 21 20 18 41 41 H 1.09002 * 109.59014 * 186.60570 * 26 17 16 42 42 H 1.09004 * 109.70347 * 66.24644 * 26 17 16 43 43 H 1.09005 * 109.49143 * 298.57333 * 27 2 1 44 44 H 1.08993 * 109.49772 * 58.63866 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6922 2.2111 1.0109 5 8 0.9927 1.8133 1.9229 6 6 2.1831 3.5990 1.0111 7 6 1.8489 4.4462 2.0447 8 6 2.3157 5.7646 2.0450 9 6 3.1007 6.2059 1.0218 10 6 3.4311 5.3319 -0.0310 11 7 4.1647 5.4793 -1.1284 12 6 4.1821 4.3449 -1.8104 13 7 3.4718 3.4387 -1.1774 14 7 2.9731 4.0456 -0.0164 15 6 2.0399 -0.7208 1.2500 16 6 3.5711 -0.6888 1.2646 17 7 4.0677 -1.2491 0.0005 18 6 4.9753 -2.2745 0.0005 19 1 5.0113 -2.9640 -0.8299 20 6 5.8494 -2.4274 1.0681 21 7 6.4254 -3.5908 1.2855 22 14 6.2080 -0.9824 2.1961 23 1 5.2788 -1.0155 3.3539 24 1 7.6083 -1.0699 2.6827 25 1 6.0224 0.2872 1.4485 26 6 3.5714 -0.6889 -1.2639 27 6 2.0399 -0.7208 -1.2500 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5756 1.6987 -0.7275 32 1 1.2278 4.0925 2.8543 33 1 2.0557 6.4309 2.8542 34 1 3.4638 7.2230 1.0165 35 1 4.7006 4.1883 -2.7447 36 1 1.6573 -0.2208 2.1398 37 1 1.6977 -1.7557 1.2383 38 1 3.9412 -1.2847 2.0988 39 1 3.9163 0.3399 1.3689 40 1 7.0358 -3.6978 2.0316 41 1 3.9418 -1.2849 -2.0981 42 1 3.9145 0.3404 -1.3696 43 1 1.6977 -1.7557 -1.2381 44 1 1.6570 -0.2211 -2.1397 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045495067.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:47 Heat of formation + Delta-G solvation = 101.716643 kcal Electronic energy + Delta-G solvation = -29561.669659 eV Core-core repulsion = 25709.686971 eV Total energy + Delta-G solvation = -3851.982688 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.85388 -41.66756 -39.56581 -38.39746 -36.35433 -35.04135 -33.83515 -32.53586 -32.15744 -32.03947 -31.01278 -29.37057 -26.22818 -25.73093 -24.60968 -24.50771 -24.04674 -22.85648 -21.94943 -20.46719 -19.26027 -18.98059 -18.62893 -17.74544 -17.50932 -17.31717 -16.79234 -16.60936 -16.14855 -15.92817 -15.56150 -15.33734 -15.26115 -15.21181 -14.71754 -14.35036 -13.97719 -13.81314 -13.69466 -13.62630 -13.37812 -13.18410 -12.99867 -12.80769 -12.71316 -12.67047 -12.31731 -12.27275 -12.14317 -11.74371 -11.66566 -11.43107 -11.37002 -10.84790 -10.81310 -10.74857 -10.16498 -9.46147 -8.99863 -8.24385 -5.54036 -0.89264 -0.17357 0.82388 1.16938 1.26725 1.27049 1.35165 1.79621 1.92363 2.31089 2.34233 2.81750 2.96854 2.99658 3.25960 3.49507 3.68456 3.76635 3.82956 3.89122 3.96193 4.04047 4.22883 4.34793 4.35053 4.53512 4.55856 4.70904 4.73682 4.75744 4.82220 4.89545 4.92035 4.99964 5.02082 5.05417 5.09651 5.19307 5.23790 5.27055 5.30975 5.46140 5.54239 5.80427 6.06709 6.40951 6.75198 6.83817 6.97941 7.54772 7.97450 8.95637 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.012698 B = 0.004872 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2204.541782 B = 5745.589882 C = 6288.566716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.179 3.821 3 N -0.699 5.699 4 C 0.553 3.447 5 O -0.542 6.542 6 C 0.045 3.955 7 C -0.060 4.060 8 C -0.050 4.050 9 C -0.077 4.077 10 C 0.257 3.743 11 N -0.561 5.561 12 C 0.244 3.756 13 N -0.382 5.382 14 N -0.284 5.284 15 C -0.135 4.135 16 C 0.137 3.863 17 N -0.614 5.614 18 C -0.243 4.243 19 H 0.064 0.936 20 C -0.026 4.026 21 N -0.950 5.950 22 Si 0.938 3.062 23 H -0.283 1.283 24 H -0.306 1.306 25 H -0.280 1.280 26 C 0.143 3.857 27 C -0.126 4.126 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.065 0.935 31 H 0.415 0.585 32 H 0.191 0.809 33 H 0.214 0.786 34 H 0.196 0.804 35 H 0.259 0.741 36 H 0.075 0.925 37 H 0.073 0.927 38 H 0.043 0.957 39 H 0.007 0.993 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.026 0.974 43 H 0.083 0.917 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.276 22.893 -1.375 26.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.094 3.906 3 N -0.355 5.355 4 C 0.339 3.661 5 O -0.421 6.421 6 C -0.066 4.066 7 C -0.083 4.083 8 C -0.075 4.075 9 C -0.098 4.098 10 C 0.005 3.995 11 N -0.292 5.292 12 C -0.056 4.056 13 N -0.215 5.215 14 N -0.061 5.061 15 C -0.175 4.175 16 C 0.011 3.989 17 N -0.339 5.339 18 C -0.372 4.372 19 H 0.081 0.919 20 C -0.221 4.221 21 N -0.596 5.596 22 Si 0.769 3.231 23 H -0.210 1.210 24 H -0.234 1.234 25 H -0.206 1.206 26 C 0.018 3.982 27 C -0.165 4.165 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.084 0.916 31 H 0.258 0.742 32 H 0.208 0.792 33 H 0.230 0.770 34 H 0.213 0.787 35 H 0.275 0.725 36 H 0.094 0.906 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.044 0.956 43 H 0.102 0.898 44 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.486 22.008 -1.240 25.841 hybrid contribution 1.166 0.094 0.288 1.204 sum -12.320 22.102 -0.952 25.322 Atomic orbital electron populations 1.22110 0.92398 1.03361 1.02875 1.20387 0.94863 0.79712 0.95673 1.46580 1.51934 1.11882 1.25081 1.17841 0.80894 0.84484 0.82923 1.90752 1.39015 1.76178 1.36121 1.20807 0.99096 0.96204 0.90499 1.22022 0.97750 0.93246 0.95322 1.21844 0.92669 0.94325 0.98656 1.21136 0.98387 1.00855 0.89453 1.22614 0.94903 0.85081 0.96950 1.70843 1.24989 1.26914 1.06428 1.26816 0.93654 0.84931 1.00181 1.77933 1.24300 1.22318 0.96979 1.47871 1.31833 1.10896 1.15498 1.22297 0.95371 1.00889 0.98959 1.21090 0.94257 0.94832 0.88679 1.44454 1.48455 1.39729 1.01240 1.18945 1.09516 1.02671 1.06100 0.91851 1.25729 0.98153 0.98154 1.00043 1.69924 1.34334 1.23446 1.31938 0.86052 0.75694 0.81955 0.79418 1.21049 1.23410 1.20588 1.21083 0.93066 0.96343 0.87689 1.22215 0.96378 1.01477 0.96471 0.91543 0.90397 0.91598 0.74225 0.79232 0.76953 0.78720 0.72549 0.90606 0.90876 0.93873 0.97472 0.92893 0.91551 0.95641 0.89805 0.88854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.97 8.40 71.98 0.60 -3.36 16 2 C 0.18 5.74 0.66 3.63 0.00 5.74 16 3 N -0.70 -22.58 4.10 -426.21 -1.75 -24.32 16 4 C 0.55 17.31 7.19 86.60 0.62 17.93 16 5 O -0.54 -17.95 12.50 -4.11 -0.05 -18.00 16 6 C 0.04 1.15 6.80 40.57 0.28 1.43 16 7 C -0.06 -0.97 9.58 22.55 0.22 -0.76 16 8 C -0.05 -0.43 10.04 22.21 0.22 -0.20 16 9 C -0.08 -0.99 10.09 22.44 0.23 -0.76 16 10 C 0.26 5.97 7.88 134.16 1.06 7.03 16 11 N -0.56 -14.19 11.24 -198.17 -2.23 -16.42 16 12 C 0.24 5.92 12.98 180.83 2.35 8.27 16 13 N -0.38 -11.09 9.99 -61.37 -0.61 -11.71 16 14 N -0.28 -7.75 3.92 -181.80 -0.71 -8.46 16 15 C -0.14 -5.22 4.66 30.66 0.14 -5.07 16 16 C 0.14 6.40 3.95 86.35 0.34 6.75 16 17 N -0.61 -29.98 2.77 -699.14 -1.94 -31.92 16 18 C -0.24 -14.05 10.04 84.04 0.84 -13.21 16 19 H 0.06 3.91 8.05 -2.91 -0.02 3.88 16 20 C -0.03 -1.54 5.23 84.86 0.44 -1.10 16 21 N -0.95 -60.76 13.97 21.65 0.30 -60.46 16 22 Si 0.94 50.00 24.34 68.60 1.67 51.67 16 23 H -0.28 -14.64 6.62 99.48 0.66 -13.98 16 24 H -0.31 -16.23 7.11 99.48 0.71 -15.52 16 25 H -0.28 -14.98 6.64 99.48 0.66 -14.32 16 26 C 0.14 5.60 6.24 86.36 0.54 6.14 16 27 C -0.13 -3.93 4.96 30.67 0.15 -3.77 16 28 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.07 1.90 6.16 -2.39 -0.01 1.89 16 31 H 0.41 13.50 4.21 -92.71 -0.39 13.11 16 32 H 0.19 2.42 7.59 -2.91 -0.02 2.40 16 33 H 0.21 -0.41 8.06 -2.91 -0.02 -0.44 16 34 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 35 H 0.26 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.08 2.93 6.20 -2.38 -0.01 2.91 16 37 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 38 H 0.04 2.25 4.50 -2.39 -0.01 2.24 16 39 H 0.01 0.36 6.67 -2.38 -0.02 0.35 16 40 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 41 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 42 H 0.03 1.00 6.94 -2.38 -0.02 0.98 16 43 H 0.08 2.61 8.14 -2.38 -0.02 2.59 16 44 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -80.47 343.34 3.28 -77.18 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.56 Total: 17.39 kcal Atomic # 6 Polarization: 17.00 SS G_CDS: 8.04 Total: 25.04 kcal Atomic # 7 Polarization: -146.35 SS G_CDS: -6.93 Total: -153.29 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.05 Total: -18.00 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 1.67 Total: 51.67 kcal Total: -80.47 3.28 -77.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045495067.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.899 kcal (2) G-P(sol) polarization free energy of solvation -80.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds