Wall clock time and date at job start Tue Mar 31 2020 05:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46190 * 2 1 4 4 C 1.34780 * 120.00010 * 60.02648 * 3 2 1 5 5 O 1.21568 * 119.99832 * 0.02562 * 4 3 2 6 6 C 1.47797 * 119.99878 * 179.97438 * 4 3 2 7 7 N 1.32295 * 120.59027 * 0.02562 * 6 4 3 8 8 C 1.32698 * 121.18641 * 179.97438 * 7 6 4 9 9 C 1.35472 * 122.11435 * 0.02562 * 8 7 6 10 10 N 1.36223 * 120.52566 * 359.97438 * 9 8 7 11 11 C 1.36162 * 133.92953 * 180.02562 * 10 9 8 12 12 C 1.35344 * 107.14580 * 179.97438 * 11 10 9 13 13 N 1.33565 * 108.60924 * 0.26305 * 12 11 10 14 14 C 1.31847 * 109.14534 * 359.55958 * 13 12 11 15 15 C 1.53043 * 109.44549 * 119.96530 * 2 1 3 16 16 C 1.53190 * 109.31102 * 181.37622 * 15 2 1 17 17 N 1.46933 * 108.77664 * 305.36622 * 16 15 2 18 18 C 1.36933 * 120.62928 * 233.63127 * 17 16 15 19 19 H 1.08006 * 119.99971 * 152.60325 * 18 17 16 20 20 C 1.38816 * 120.00191 * 332.59748 * 18 17 16 21 21 N 1.31621 * 119.99919 * 159.36171 * 20 18 17 22 22 Si 1.86796 * 119.99894 * 339.36459 * 20 18 17 23 23 H 1.48499 * 109.47015 * 92.89888 * 22 20 18 24 24 H 1.48501 * 109.47401 * 212.89629 * 22 20 18 25 25 H 1.48493 * 109.47450 * 332.90062 * 22 20 18 26 26 C 1.46927 * 118.73828 * 53.61108 * 17 16 15 27 27 C 1.53044 * 109.45895 * 240.02537 * 2 1 3 28 28 H 1.09006 * 109.46960 * 59.99398 * 1 2 3 29 29 H 1.08992 * 109.47292 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47175 * 300.00425 * 1 2 3 31 31 H 0.96994 * 119.99942 * 240.02556 * 3 2 1 32 32 H 1.07999 * 118.94032 * 179.97438 * 8 7 6 33 33 H 1.08003 * 119.74180 * 179.97438 * 9 8 7 34 34 H 1.07999 * 126.43112 * 0.02562 * 11 10 9 35 35 H 1.07991 * 125.69567 * 180.02562 * 12 11 10 36 36 H 1.08991 * 109.49955 * 301.33046 * 15 2 1 37 37 H 1.09001 * 109.49598 * 61.42594 * 15 2 1 38 38 H 1.08997 * 109.58961 * 185.58005 * 16 15 2 39 39 H 1.09002 * 109.70783 * 65.22141 * 16 15 2 40 40 H 0.97004 * 119.99751 * 179.97438 * 21 20 18 41 41 H 1.08998 * 109.58306 * 186.60613 * 26 17 16 42 42 H 1.08994 * 109.70277 * 66.24530 * 26 17 16 43 43 H 1.08998 * 109.49518 * 298.58001 * 27 2 1 44 44 H 1.08993 * 109.49831 * 58.64623 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0181 1.3813 0.0000 4 6 1.6928 2.2110 1.0111 5 8 0.9947 1.8130 1.9233 6 6 2.1857 3.6044 1.0114 7 7 2.9465 4.0495 0.0248 8 6 3.3951 5.2983 0.0129 9 6 3.1025 6.1782 1.0005 10 7 2.3252 5.8023 2.0542 11 6 1.8699 6.4407 3.1673 12 6 1.1279 5.5483 3.8637 13 7 1.1279 4.3870 3.2038 14 6 1.8405 4.5157 2.1020 15 6 2.0395 -0.7208 1.2502 16 6 3.5710 -0.6890 1.2646 17 7 4.0675 -1.2495 0.0004 18 6 4.9751 -2.2748 0.0006 19 1 5.0110 -2.9644 -0.8299 20 6 5.8492 -2.4279 1.0681 21 7 6.4250 -3.5913 1.2855 22 14 6.2080 -0.9828 2.1960 23 1 5.2786 -1.0159 3.3538 24 1 7.6082 -1.0705 2.6828 25 1 6.0224 0.2867 1.4485 26 6 3.5714 -0.6891 -1.2640 27 6 2.0398 -0.7210 -1.2500 28 1 -0.3633 0.5140 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 2.5754 1.6987 -0.7276 32 1 4.0140 5.6234 -0.8103 33 1 3.4886 7.1857 0.9522 34 1 2.0636 7.4669 3.4426 35 1 0.6236 5.7417 4.7988 36 1 1.6569 -0.2207 2.1398 37 1 1.6972 -1.7556 1.2384 38 1 3.9411 -1.2850 2.0988 39 1 3.9163 0.3396 1.3688 40 1 7.0361 -3.6982 2.0313 41 1 3.9417 -1.2852 -2.0980 42 1 3.9145 0.3400 -1.3696 43 1 1.6975 -1.7557 -1.2382 44 1 1.6570 -0.2213 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045562090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:38 Heat of formation + Delta-G solvation = 111.352736 kcal Electronic energy + Delta-G solvation = -29059.918757 eV Core-core repulsion = 25208.353921 eV Total energy + Delta-G solvation = -3851.564836 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.27656 -40.26571 -38.71712 -37.48980 -34.59152 -34.54550 -32.08223 -31.27468 -30.56305 -30.37839 -29.70167 -27.66023 -25.82008 -23.88815 -23.57051 -22.76091 -22.58752 -21.54735 -20.69758 -19.05630 -18.66636 -18.36898 -16.88664 -16.51965 -16.34674 -15.88102 -15.31583 -15.21860 -14.84360 -14.60214 -14.31900 -14.05869 -14.00824 -13.61983 -13.52504 -13.37344 -13.11920 -13.02793 -12.31667 -12.02560 -11.96132 -11.73195 -11.69062 -11.31148 -11.18951 -10.76180 -10.62892 -10.50373 -10.38460 -10.18802 -9.96916 -9.69667 -9.46578 -9.30662 -9.28242 -8.80551 -8.55129 -8.47308 -6.90547 -5.90382 -3.25114 -0.21988 0.88017 1.97426 2.46939 2.68396 2.99621 3.39923 3.52748 3.54372 3.56565 3.65725 3.77826 3.96363 4.27542 4.58858 4.69567 4.82996 4.95478 5.01209 5.04395 5.15580 5.28761 5.37199 5.42745 5.51111 5.73308 5.84354 5.94262 6.06005 6.09482 6.16729 6.18136 6.22767 6.37195 6.37706 6.57360 6.59392 6.62589 6.72258 6.77354 6.88862 7.03661 7.12235 7.52316 7.77207 8.02042 8.35750 8.37558 8.99783 9.77986 10.16548 11.25725 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014009 B = 0.004234 C = 0.003845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.224364 B = 6610.945683 C = 7280.480524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 N -0.690 5.690 4 C 0.571 3.429 5 O -0.493 6.493 6 C 0.187 3.813 7 N -0.427 5.427 8 C 0.033 3.967 9 C 0.029 3.971 10 N -0.357 5.357 11 C -0.083 4.083 12 C 0.032 3.968 13 N -0.432 5.432 14 C 0.191 3.809 15 C -0.145 4.145 16 C 0.132 3.868 17 N -0.605 5.605 18 C -0.258 4.258 19 H 0.086 0.914 20 C 0.025 3.975 21 N -0.909 5.909 22 Si 0.880 3.120 23 H -0.289 1.289 24 H -0.305 1.305 25 H -0.273 1.273 26 C 0.148 3.852 27 C -0.137 4.137 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.408 0.592 32 H 0.186 0.814 33 H 0.176 0.824 34 H 0.190 0.810 35 H 0.189 0.811 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.066 0.934 42 H 0.021 0.979 43 H 0.081 0.919 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.097 22.833 -2.649 25.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.098 3.902 3 N -0.343 5.343 4 C 0.352 3.648 5 O -0.365 6.365 6 C 0.021 3.979 7 N -0.143 5.143 8 C -0.108 4.108 9 C -0.096 4.096 10 N -0.032 5.032 11 C -0.217 4.217 12 C -0.121 4.121 13 N -0.151 5.151 14 C -0.057 4.057 15 C -0.185 4.185 16 C 0.007 3.993 17 N -0.328 5.328 18 C -0.386 4.386 19 H 0.104 0.896 20 C -0.173 4.173 21 N -0.552 5.552 22 Si 0.711 3.289 23 H -0.216 1.216 24 H -0.233 1.233 25 H -0.198 1.198 26 C 0.021 3.979 27 C -0.177 4.177 28 H 0.069 0.931 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.244 0.756 32 H 0.202 0.798 33 H 0.193 0.807 34 H 0.207 0.793 35 H 0.206 0.794 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.039 0.961 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.038 0.962 43 H 0.100 0.900 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.538 21.331 -2.406 23.914 hybrid contribution 1.011 2.585 0.857 2.905 sum -9.527 23.917 -1.549 25.791 Atomic orbital electron populations 1.22224 0.94662 1.02362 1.02673 1.20374 0.93235 0.79349 0.97202 1.45975 1.52255 1.11764 1.24307 1.17177 0.81499 0.82689 0.83414 1.90835 1.36204 1.74722 1.34785 1.22447 0.93929 0.94473 0.87089 1.68128 1.07394 1.15664 1.23065 1.22133 1.01452 0.88232 0.98953 1.22749 0.96222 1.02774 0.87893 1.42909 1.32008 1.12268 1.15971 1.22792 1.07888 1.01427 0.89564 1.22931 0.99902 0.88352 1.00901 1.70692 1.17677 1.23922 1.02802 1.22552 1.00900 0.84211 0.97996 1.22429 0.98391 1.00384 0.97291 1.21237 0.91722 0.96501 0.89888 1.44354 1.48892 1.40239 0.99358 1.18921 1.09636 1.02618 1.07426 0.89647 1.25236 0.97443 0.96521 0.98132 1.69837 1.32752 1.21941 1.30698 0.86994 0.76095 0.84958 0.80878 1.21628 1.23296 1.19786 1.20900 0.90670 0.96492 0.89817 1.22330 0.99289 1.00945 0.95105 0.93114 0.91730 0.90595 0.75553 0.79750 0.80716 0.79275 0.79435 0.90437 0.90815 0.91216 0.96146 0.92841 0.91584 0.96161 0.90005 0.91986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 8.40 37.16 0.31 -2.03 16 2 C 0.18 3.01 0.66 -131.77 -0.09 2.92 16 3 N -0.69 -11.02 4.10 -48.51 -0.20 -11.22 16 4 C 0.57 9.82 7.23 -12.35 -0.09 9.73 16 5 O -0.49 -9.67 12.44 5.31 0.07 -9.60 16 6 C 0.19 2.87 6.97 -80.54 -0.56 2.31 16 7 N -0.43 -5.48 9.67 -8.68 -0.08 -5.56 16 8 C 0.03 0.29 11.01 -18.16 -0.20 0.09 16 9 C 0.03 0.22 11.00 -16.59 -0.18 0.04 16 10 N -0.36 -3.92 2.95 -61.12 -0.18 -4.10 16 11 C -0.08 -0.73 11.80 -16.66 -0.20 -0.93 16 12 C 0.03 0.35 11.84 -17.83 -0.21 0.14 16 13 N -0.43 -6.82 10.74 -11.28 -0.12 -6.94 16 14 C 0.19 2.87 7.67 -153.98 -1.18 1.69 16 15 C -0.15 -2.86 4.67 -26.61 -0.12 -2.99 16 16 C 0.13 3.07 3.95 -3.71 -0.01 3.06 16 17 N -0.60 -14.45 2.77 -172.31 -0.48 -14.93 16 18 C -0.26 -7.26 10.03 -15.06 -0.15 -7.41 16 19 H 0.09 2.53 8.06 -52.48 -0.42 2.11 16 20 C 0.03 0.75 5.23 -17.43 -0.09 0.66 16 21 N -0.91 -28.37 13.97 55.49 0.78 -27.60 16 22 Si 0.88 23.51 24.34 -169.99 -4.14 19.38 16 23 H -0.29 -7.66 6.62 56.52 0.37 -7.28 16 24 H -0.30 -8.20 7.11 56.52 0.40 -7.80 16 25 H -0.27 -7.21 6.63 56.52 0.37 -6.83 16 26 C 0.15 2.80 6.24 -3.71 -0.02 2.77 16 27 C -0.14 -2.14 4.96 -26.61 -0.13 -2.28 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.23 6.17 -51.93 -0.32 0.91 16 31 H 0.41 6.00 6.64 -40.82 -0.27 5.72 16 32 H 0.19 0.91 8.06 -52.49 -0.42 0.48 16 33 H 0.18 0.55 8.06 -52.48 -0.42 0.12 16 34 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 35 H 0.19 1.36 8.06 -52.49 -0.42 0.94 16 36 H 0.08 1.58 6.20 -51.93 -0.32 1.26 16 37 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 38 H 0.07 1.81 4.50 -51.93 -0.23 1.58 16 39 H 0.02 0.49 6.67 -51.93 -0.35 0.15 16 40 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 41 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 42 H 0.02 0.37 6.94 -51.93 -0.36 0.01 16 43 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -36.81 347.33 -7.74 -44.55 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -5.68 Total: 3.01 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -2.93 Total: 7.77 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -0.29 Total: -70.33 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: 0.07 Total: -9.60 kcal Atomic # 14 Polarization: 23.51 SS G_CDS: -4.14 Total: 19.38 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -36.81 -7.74 -44.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045562090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.900 kcal (2) G-P(sol) polarization free energy of solvation -36.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds