Wall clock time and date at job start Tue Mar 31 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46505 * 109.46029 * 2 1 4 4 C 1.34777 * 119.99880 * 59.99878 * 3 2 1 5 5 O 1.21586 * 119.99938 * 359.97438 * 4 3 2 6 6 C 1.47602 * 119.99788 * 180.02562 * 4 3 2 7 7 C 1.41813 * 119.98306 * 0.24126 * 6 4 3 8 8 C 1.35633 * 119.60019 * 180.20639 * 7 6 4 9 9 C 1.41049 * 119.40097 * 359.53505 * 8 7 6 10 10 N 1.32187 * 133.25491 * 180.25198 * 9 8 7 11 11 N 1.28650 * 109.56833 * 179.97438 * 10 9 8 12 12 C 1.30720 * 110.33781 * 359.97438 * 11 10 9 13 13 N 1.36252 * 107.45696 * 359.97438 * 12 11 10 14 14 C 1.35840 * 133.53041 * 179.97438 * 13 12 11 15 15 C 1.53044 * 109.45712 * 119.96883 * 2 1 3 16 16 C 1.53165 * 109.32510 * 181.38721 * 15 2 1 17 17 N 1.46922 * 108.77018 * 305.35755 * 16 15 2 18 18 C 1.36939 * 120.63241 * 233.63298 * 17 16 15 19 19 H 1.07998 * 120.00415 * 151.79959 * 18 17 16 20 20 C 1.38819 * 120.00111 * 331.80749 * 18 17 16 21 21 N 1.31618 * 119.99293 * 343.08818 * 20 18 17 22 22 Si 1.86797 * 120.00364 * 163.08831 * 20 18 17 23 23 H 1.48498 * 109.47081 * 59.99635 * 22 20 18 24 24 H 1.48493 * 109.47213 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47024 * 300.00136 * 22 20 18 26 26 C 1.46922 * 118.74043 * 53.60757 * 17 16 15 27 27 C 1.53035 * 109.46323 * 240.02292 * 2 1 3 28 28 H 1.09004 * 109.46996 * 60.00077 * 1 2 3 29 29 H 1.08998 * 109.47275 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47814 * 300.00287 * 1 2 3 31 31 H 0.96991 * 120.00007 * 239.99578 * 3 2 1 32 32 H 1.08004 * 120.19835 * 359.97438 * 7 6 4 33 33 H 1.07999 * 120.29772 * 179.80492 * 8 7 6 34 34 H 1.08004 * 126.27014 * 179.97438 * 12 11 10 35 35 H 1.07999 * 119.81495 * 359.97438 * 14 13 12 36 36 H 1.08999 * 109.50162 * 301.32204 * 15 2 1 37 37 H 1.08997 * 109.49618 * 61.42249 * 15 2 1 38 38 H 1.09007 * 109.58995 * 185.57160 * 16 15 2 39 39 H 1.08994 * 109.71156 * 65.21340 * 16 15 2 40 40 H 0.97003 * 119.99771 * 180.02562 * 21 20 18 41 41 H 1.08997 * 109.58928 * 186.60454 * 26 17 16 42 42 H 1.09002 * 109.70148 * 66.25192 * 26 17 16 43 43 H 1.08995 * 109.50114 * 298.58417 * 27 2 1 44 44 H 1.09007 * 109.49565 * 58.64855 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0180 1.3814 0.0000 4 6 1.6922 2.2112 1.0108 5 8 0.9929 1.8135 1.9225 6 6 2.1835 3.6030 1.0105 7 6 2.9941 4.0682 -0.0561 8 6 3.4447 5.3475 -0.0464 9 6 3.0909 6.1982 1.0215 10 7 3.3635 7.4608 1.3024 11 7 2.7991 7.7871 2.4115 12 6 2.1400 6.7704 2.9022 13 7 2.2986 5.7265 2.0411 14 6 1.8512 4.4438 2.0332 15 6 2.0397 -0.7208 1.2501 16 6 3.5710 -0.6888 1.2646 17 7 4.0676 -1.2492 0.0005 18 6 4.9753 -2.2746 0.0007 19 1 5.0026 -2.9718 -0.8236 20 6 5.8603 -2.4179 1.0605 21 7 6.0654 -1.4142 1.8869 22 14 6.7601 -4.0352 1.3139 23 1 7.5837 -4.3364 0.1155 24 1 7.6394 -3.9310 2.5060 25 1 5.7721 -5.1240 1.5218 26 6 3.5714 -0.6890 -1.2638 27 6 2.0399 -0.7209 -1.2499 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 2.5756 1.6987 -0.7274 32 1 3.2540 3.4068 -0.8694 33 1 4.0653 5.7126 -0.8514 34 1 1.5735 6.7599 3.8217 35 1 1.2312 4.0865 2.8420 36 1 1.6573 -0.2207 2.1399 37 1 1.6975 -1.7556 1.2383 38 1 3.9411 -1.2848 2.0990 39 1 3.9162 0.3397 1.3689 40 1 6.6841 -1.5142 2.6273 41 1 3.9417 -1.2851 -2.0979 42 1 3.9145 0.3401 -1.3695 43 1 1.6976 -1.7557 -1.2381 44 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045586623.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:45 Heat of formation + Delta-G solvation = 104.394800 kcal Electronic energy + Delta-G solvation = -28592.162067 eV Core-core repulsion = 24740.295513 eV Total energy + Delta-G solvation = -3851.866555 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.80137 -40.51569 -38.46875 -37.19530 -34.68190 -34.31339 -32.42398 -31.53771 -30.58178 -29.99801 -29.66777 -27.52772 -25.25217 -24.13047 -23.98560 -22.75081 -22.40451 -21.69007 -20.73706 -19.06482 -18.61454 -17.60807 -17.35309 -16.78482 -16.69030 -15.76849 -15.15671 -15.05724 -14.85651 -14.78672 -14.35153 -13.95616 -13.60937 -13.49496 -13.36228 -13.21538 -12.76220 -12.44873 -12.31143 -12.01057 -11.90327 -11.70821 -11.57600 -11.49194 -11.23595 -11.00798 -10.86395 -10.76614 -10.50021 -10.34833 -10.10022 -9.94671 -9.85777 -9.68258 -9.34055 -8.80756 -8.51305 -8.43995 -6.73339 -5.84324 -3.27789 0.17374 0.62348 1.91711 2.26488 2.75404 3.16469 3.34416 3.38561 3.41131 3.41643 3.75651 4.20822 4.23323 4.43420 4.43995 4.47007 4.59466 4.94184 5.17732 5.26457 5.30364 5.33090 5.41460 5.50276 5.53236 5.66014 5.69164 5.84638 5.88469 5.94313 6.01905 6.08847 6.23794 6.32915 6.40120 6.47730 6.57455 6.61933 6.67467 6.80825 6.92134 7.32348 7.59774 7.64728 7.74345 8.23174 8.23747 8.39220 9.15438 9.78597 10.34563 11.23655 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014904 B = 0.003394 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.272611 B = 8247.706003 C = 9141.827179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.184 3.816 3 N -0.697 5.697 4 C 0.572 3.428 5 O -0.533 6.533 6 C -0.144 4.144 7 C -0.063 4.063 8 C -0.082 4.082 9 C 0.203 3.797 10 N -0.292 5.292 11 N -0.253 5.253 12 C 0.124 3.876 13 N -0.396 5.396 14 C 0.136 3.864 15 C -0.152 4.152 16 C 0.177 3.823 17 N -0.590 5.590 18 C -0.257 4.257 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.901 5.901 22 Si 0.902 3.098 23 H -0.283 1.283 24 H -0.291 1.291 25 H -0.284 1.284 26 C 0.145 3.855 27 C -0.138 4.138 28 H 0.047 0.953 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.398 0.602 32 H 0.152 0.848 33 H 0.163 0.837 34 H 0.230 0.770 35 H 0.187 0.813 36 H 0.071 0.929 37 H 0.062 0.938 38 H 0.084 0.916 39 H 0.016 0.984 40 H 0.254 0.746 41 H 0.057 0.943 42 H 0.012 0.988 43 H 0.077 0.923 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.230 9.995 -3.679 15.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.099 3.901 3 N -0.348 5.348 4 C 0.357 3.643 5 O -0.411 6.411 6 C -0.151 4.151 7 C -0.087 4.087 8 C -0.103 4.103 9 C -0.047 4.047 10 N -0.137 5.137 11 N -0.091 5.091 12 C -0.158 4.158 13 N -0.076 5.076 14 C 0.011 3.989 15 C -0.192 4.192 16 C 0.051 3.949 17 N -0.313 5.313 18 C -0.387 4.387 19 H 0.082 0.918 20 C -0.194 4.194 21 N -0.545 5.545 22 Si 0.732 3.268 23 H -0.209 1.209 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.018 3.982 27 C -0.178 4.178 28 H 0.066 0.934 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.234 0.766 32 H 0.169 0.831 33 H 0.181 0.819 34 H 0.246 0.754 35 H 0.204 0.796 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.102 0.898 39 H 0.034 0.966 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.096 0.904 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.012 11.282 -2.920 16.034 hybrid contribution 0.331 -1.952 0.065 1.981 sum -10.682 9.330 -2.855 14.467 Atomic orbital electron populations 1.22234 0.95130 1.02162 1.02380 1.20359 0.92734 0.79386 0.97581 1.45974 1.52294 1.12270 1.24215 1.17478 0.80438 0.83743 0.82642 1.90741 1.38352 1.76475 1.35570 1.19682 1.03225 0.95773 0.96467 1.21269 0.94511 0.95379 0.97589 1.20175 1.01739 0.91796 0.96576 1.22581 0.96299 0.93504 0.92278 1.74934 1.21652 1.07662 1.09431 1.74174 1.07573 1.23303 1.04003 1.26641 1.07014 0.82458 0.99711 1.43870 1.34460 1.10497 1.18782 1.21734 0.96767 0.80519 0.99926 1.22596 1.00880 0.99273 0.96410 1.20685 0.87153 0.96947 0.90084 1.44044 1.48352 1.39564 0.99322 1.19120 1.09848 1.02934 1.06766 0.91761 1.25041 0.97138 0.97355 0.99844 1.70019 1.37304 1.29042 1.18091 0.86384 0.79301 0.83790 0.77369 1.20876 1.21642 1.21005 1.20861 0.90368 0.96165 0.90761 1.22358 0.99753 1.00697 0.94988 0.93353 0.91994 0.90761 0.76589 0.83074 0.81903 0.75384 0.79587 0.91005 0.91957 0.89757 0.96625 0.93570 0.92494 0.97011 0.90446 0.92486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.40 37.15 0.31 -1.81 16 2 C 0.18 2.74 0.66 -131.78 -0.09 2.65 16 3 N -0.70 -9.28 4.06 -48.58 -0.20 -9.48 16 4 C 0.57 7.81 7.18 -12.44 -0.09 7.72 16 5 O -0.53 -8.53 12.49 5.29 0.07 -8.46 16 6 C -0.14 -1.63 5.84 -105.34 -0.61 -2.25 16 7 C -0.06 -0.60 9.53 -39.15 -0.37 -0.98 16 8 C -0.08 -0.82 10.09 -39.45 -0.40 -1.21 16 9 C 0.20 2.55 7.92 -155.95 -1.23 1.32 16 10 N -0.29 -4.28 12.29 31.19 0.38 -3.89 16 11 N -0.25 -3.46 12.18 29.87 0.36 -3.10 16 12 C 0.12 1.28 12.97 -89.08 -1.16 0.12 16 13 N -0.40 -4.42 2.94 -63.63 -0.19 -4.60 16 14 C 0.14 1.42 10.53 -16.40 -0.17 1.25 16 15 C -0.15 -2.81 4.66 -26.62 -0.12 -2.94 16 16 C 0.18 4.01 5.04 -3.73 -0.02 4.00 16 17 N -0.59 -13.65 2.99 -172.34 -0.52 -14.17 16 18 C -0.26 -6.72 9.58 -15.06 -0.14 -6.86 16 19 H 0.06 1.65 7.88 -52.49 -0.41 1.23 16 20 C 0.01 0.14 4.92 -17.43 -0.09 0.05 16 21 N -0.90 -25.47 11.20 55.49 0.62 -24.85 16 22 Si 0.90 21.16 29.59 -169.99 -5.03 16.13 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 26 C 0.15 2.63 6.24 -3.71 -0.02 2.61 16 27 C -0.14 -2.02 4.96 -26.61 -0.13 -2.15 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.08 6.16 -51.93 -0.32 0.76 16 31 H 0.40 4.55 5.30 -40.82 -0.22 4.34 16 32 H 0.15 1.12 6.44 -52.48 -0.34 0.78 16 33 H 0.16 1.23 8.06 -52.49 -0.42 0.80 16 34 H 0.23 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.19 1.63 7.56 -52.49 -0.40 1.23 16 36 H 0.07 1.37 6.20 -51.93 -0.32 1.05 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 2.23 6.06 -51.93 -0.31 1.92 16 39 H 0.02 0.38 7.74 -51.93 -0.40 -0.03 16 40 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.06 1.03 7.93 -51.93 -0.41 0.62 16 42 H 0.01 0.21 6.94 -51.93 -0.36 -0.15 16 43 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -33.02 350.93 -9.14 -42.16 By element: Atomic # 1 Polarization: 9.04 SS G_CDS: -5.59 Total: 3.45 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: -4.34 Total: 1.52 kcal Atomic # 7 Polarization: -60.55 SS G_CDS: 0.47 Total: -60.09 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.07 Total: -8.46 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.03 Total: 16.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.02 -9.14 -42.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045586623.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.554 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds