Wall clock time and date at job start Tue Mar 31 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.46135 * 2 1 4 4 C 1.34782 * 120.00331 * 60.30165 * 3 2 1 5 5 O 1.21555 * 119.99612 * 359.72447 * 4 3 2 6 6 C 1.47872 * 120.00381 * 179.72666 * 4 3 2 7 7 C 1.39899 * 125.69626 * 180.02562 * 6 4 3 8 8 C 1.38577 * 107.59664 * 179.97438 * 7 6 4 9 9 N 1.34118 * 132.34554 * 179.97438 * 8 7 6 10 10 C 1.31126 * 120.84703 * 179.97438 * 9 8 7 11 11 C 1.40349 * 120.29702 * 0.02562 * 10 9 8 12 12 C 1.35454 * 119.46045 * 359.97438 * 11 10 9 13 13 N 1.36669 * 119.14548 * 0.02562 * 12 11 10 14 14 N 1.32380 * 125.69535 * 359.68696 * 6 4 3 15 15 C 1.53039 * 109.44864 * 119.96511 * 2 1 3 16 16 C 1.53191 * 109.31322 * 181.37895 * 15 2 1 17 17 N 1.46921 * 108.77919 * 305.36403 * 16 15 2 18 18 C 1.36939 * 120.63547 * 233.63626 * 17 16 15 19 19 H 1.08000 * 119.99772 * 27.65294 * 18 17 16 20 20 C 1.38810 * 120.00122 * 207.66257 * 18 17 16 21 21 N 1.31623 * 119.99908 * 17.36034 * 20 18 17 22 22 Si 1.86793 * 119.99964 * 197.35703 * 20 18 17 23 23 H 1.48500 * 109.47369 * 90.00272 * 22 20 18 24 24 H 1.48507 * 109.47218 * 209.99881 * 22 20 18 25 25 H 1.48505 * 109.47347 * 330.00035 * 22 20 18 26 26 C 1.46933 * 118.73676 * 53.60538 * 17 16 15 27 27 C 1.53042 * 109.46125 * 240.02490 * 2 1 3 28 28 H 1.09004 * 109.47187 * 59.99902 * 1 2 3 29 29 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47226 * 300.00076 * 1 2 3 31 31 H 0.97001 * 120.00226 * 240.02785 * 3 2 1 32 32 H 1.08000 * 126.20119 * 359.97438 * 7 6 4 33 33 H 1.08000 * 119.85287 * 179.97438 * 10 9 8 34 34 H 1.07995 * 120.27098 * 180.02562 * 11 10 9 35 35 H 1.08007 * 120.42852 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.49643 * 301.33115 * 15 2 1 37 37 H 1.09002 * 109.50154 * 61.42755 * 15 2 1 38 38 H 1.09004 * 109.58579 * 185.57700 * 16 15 2 39 39 H 1.09001 * 109.58808 * 65.15773 * 16 15 2 40 40 H 0.96999 * 119.99900 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.58318 * 186.60620 * 26 17 16 42 42 H 1.08993 * 109.70068 * 66.25077 * 26 17 16 43 43 H 1.08995 * 109.49763 * 298.58286 * 27 2 1 44 44 H 1.09002 * 109.49613 * 58.64700 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3812 0.0000 4 6 1.6974 2.2094 1.0139 5 8 0.9990 1.8116 1.9258 6 6 2.1950 3.6018 1.0169 7 6 1.9372 4.5587 2.0044 8 6 2.5828 5.7276 1.6339 9 7 2.6652 6.9358 2.2102 10 6 3.3534 7.9018 1.6512 11 6 4.0178 7.6852 0.4340 12 6 3.9428 6.4696 -0.1588 13 7 3.2192 5.4789 0.4435 14 7 2.9641 4.1493 0.0889 15 6 2.0395 -0.7208 1.2502 16 6 3.5710 -0.6889 1.2645 17 7 4.0677 -1.2493 0.0004 18 6 4.9753 -2.2747 0.0006 19 1 5.0078 -2.9669 0.8290 20 6 5.8535 -2.4243 -1.0639 21 7 6.0602 -1.4227 -1.8924 22 14 6.7421 -4.0472 -1.3205 23 1 5.9245 -4.9265 -2.1943 24 1 8.0571 -3.7954 -1.9631 25 1 6.9514 -4.7100 -0.0081 26 6 3.5714 -0.6890 -1.2640 27 6 2.0399 -0.7210 -1.2500 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5753 1.6988 -0.7277 32 1 1.3428 4.4128 2.8943 33 1 3.4087 8.8688 2.1291 34 1 4.5849 8.4810 -0.0258 35 1 4.4483 6.2856 -1.0954 36 1 1.6569 -0.2206 2.1398 37 1 1.6973 -1.7556 1.2385 38 1 3.9411 -1.2849 2.0988 39 1 3.9142 0.3405 1.3677 40 1 6.6737 -1.5274 -2.6364 41 1 3.9417 -1.2851 -2.0980 42 1 3.9145 0.3401 -1.3696 43 1 1.6976 -1.7557 -1.2382 44 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001045594755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:41 Heat of formation + Delta-G solvation = 113.883087 kcal Electronic energy + Delta-G solvation = -28370.221188 eV Core-core repulsion = 24518.766076 eV Total energy + Delta-G solvation = -3851.455112 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.50359 -40.12862 -38.26991 -37.16051 -34.44141 -34.26353 -32.29525 -31.33201 -30.53893 -29.88693 -29.32420 -27.40826 -25.53987 -24.23330 -23.99667 -22.76360 -22.25296 -20.98922 -20.16697 -18.72721 -18.53520 -17.87894 -17.02527 -16.65692 -16.32135 -15.70499 -15.01816 -14.83731 -14.75854 -14.60451 -14.03473 -13.82441 -13.57934 -13.38865 -13.29555 -13.21125 -13.06178 -12.77355 -12.39092 -11.84162 -11.63295 -11.51976 -11.47915 -11.28929 -11.18767 -10.92354 -10.72694 -10.34182 -10.29428 -10.19145 -9.96038 -9.86586 -9.74734 -9.63082 -9.25489 -8.67427 -8.44993 -8.18431 -6.65099 -5.78071 -3.19297 0.21335 0.50704 1.72344 1.77885 3.10016 3.18853 3.38394 3.45374 3.46696 3.47855 3.63471 3.89808 4.08402 4.50860 4.54659 4.68532 4.99745 5.09276 5.22737 5.29742 5.37196 5.43293 5.51542 5.57225 5.62801 5.71328 5.99985 6.05844 6.06739 6.19207 6.20894 6.29212 6.35250 6.42752 6.54998 6.66705 6.71696 6.83900 6.95606 7.02550 7.08125 7.30613 7.31378 7.60868 7.79895 7.85287 8.38517 8.46037 9.22579 9.86215 10.43381 11.30423 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.003315 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.726186 B = 8444.545339 C = 9621.482617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.182 3.818 3 N -0.689 5.689 4 C 0.599 3.401 5 O -0.521 6.521 6 C 0.079 3.921 7 C -0.201 4.201 8 C 0.245 3.755 9 N -0.457 5.457 10 C 0.177 3.823 11 C -0.226 4.226 12 C 0.165 3.835 13 N -0.307 5.307 14 N -0.270 5.270 15 C -0.144 4.144 16 C 0.149 3.851 17 N -0.591 5.591 18 C -0.249 4.249 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.279 1.279 26 C 0.171 3.829 27 C -0.146 4.146 28 H 0.049 0.951 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.408 0.592 32 H 0.172 0.828 33 H 0.181 0.819 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.052 0.948 39 H 0.014 0.986 40 H 0.253 0.747 41 H 0.090 0.910 42 H 0.016 0.984 43 H 0.074 0.926 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.128 18.503 1.763 19.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.097 3.903 3 N -0.340 5.340 4 C 0.381 3.619 5 O -0.396 6.396 6 C -0.081 4.081 7 C -0.232 4.232 8 C 0.019 3.981 9 N -0.168 5.168 10 C -0.009 4.009 11 C -0.250 4.250 12 C 0.032 3.968 13 N -0.080 5.080 14 N -0.100 5.100 15 C -0.184 4.184 16 C 0.023 3.977 17 N -0.314 5.314 18 C -0.379 4.379 19 H 0.083 0.917 20 C -0.198 4.198 21 N -0.549 5.549 22 Si 0.732 3.268 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.205 1.205 26 C 0.045 3.955 27 C -0.185 4.185 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.244 0.756 32 H 0.190 0.810 33 H 0.197 0.803 34 H 0.186 0.814 35 H 0.199 0.801 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.034 0.966 43 H 0.092 0.908 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.475 17.722 1.981 19.336 hybrid contribution 1.030 -0.393 -0.715 1.314 sum -6.445 17.329 1.265 18.532 Atomic orbital electron populations 1.22237 0.95090 1.02143 1.02472 1.20391 0.92830 0.79421 0.97623 1.46086 1.51816 1.12078 1.23978 1.16796 0.80424 0.81862 0.82860 1.90738 1.37925 1.74984 1.35921 1.22341 0.96245 0.96114 0.93364 1.20971 1.09604 0.88665 1.03923 1.20548 0.97585 0.94074 0.85877 1.68242 1.18983 0.97936 1.31641 1.23425 0.88493 0.97785 0.91211 1.21847 1.06624 0.97336 0.99210 1.22143 0.91030 0.85226 0.98441 1.47200 1.33552 1.09892 1.17401 1.78237 1.22457 0.86419 1.22866 1.22417 0.99037 0.99815 0.97090 1.20844 0.90862 0.96126 0.89880 1.44049 1.48285 1.39602 0.99417 1.19224 1.09705 1.02837 1.06086 0.91659 1.25019 0.97247 0.97444 1.00043 1.70033 1.37921 1.28934 1.17987 0.86288 0.78750 0.83762 0.77965 1.21488 1.21863 1.20477 1.20750 0.86802 0.97174 0.90781 1.22529 1.01506 1.00046 0.94434 0.93197 0.91923 0.90825 0.75593 0.81023 0.80253 0.81408 0.80095 0.90743 0.91500 0.92979 0.96804 0.93745 0.89184 0.96569 0.90761 0.92642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.47 8.40 37.16 0.31 -2.16 16 2 C 0.18 3.17 0.66 -131.78 -0.09 3.09 16 3 N -0.69 -11.84 4.10 -48.49 -0.20 -12.04 16 4 C 0.60 10.43 7.25 -12.31 -0.09 10.34 16 5 O -0.52 -9.80 13.10 5.32 0.07 -9.73 16 6 C 0.08 1.29 7.05 -83.07 -0.59 0.71 16 7 C -0.20 -3.02 10.65 -38.84 -0.41 -3.43 16 8 C 0.24 3.37 7.90 -155.41 -1.23 2.14 16 9 N -0.46 -5.24 10.48 -12.22 -0.13 -5.37 16 10 C 0.18 1.22 11.27 -17.06 -0.19 1.02 16 11 C -0.23 -1.23 10.05 -39.78 -0.40 -1.63 16 12 C 0.17 1.39 11.30 -16.39 -0.19 1.20 16 13 N -0.31 -4.02 3.90 -12.20 -0.05 -4.07 16 14 N -0.27 -4.23 12.34 33.23 0.41 -3.82 16 15 C -0.14 -2.74 4.66 -26.61 -0.12 -2.86 16 16 C 0.15 3.32 6.26 -3.71 -0.02 3.30 16 17 N -0.59 -14.81 3.00 -172.32 -0.52 -15.33 16 18 C -0.25 -6.86 9.58 -15.06 -0.14 -7.00 16 19 H 0.07 1.79 7.89 -52.49 -0.41 1.37 16 20 C 0.00 0.02 4.91 -17.43 -0.09 -0.07 16 21 N -0.90 -25.97 11.19 55.49 0.62 -25.35 16 22 Si 0.90 21.74 29.59 -169.99 -5.03 16.71 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 C 0.17 3.95 5.04 -3.71 -0.02 3.93 16 27 C -0.15 -2.68 4.96 -26.61 -0.13 -2.81 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 30 H 0.07 1.20 6.18 -51.93 -0.32 0.88 16 31 H 0.41 7.02 6.95 -40.82 -0.28 6.73 16 32 H 0.17 2.40 8.06 -52.49 -0.42 1.98 16 33 H 0.18 0.48 8.06 -52.49 -0.42 0.06 16 34 H 0.17 0.22 8.06 -52.49 -0.42 -0.20 16 35 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 36 H 0.07 1.43 6.19 -51.93 -0.32 1.10 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 1.16 7.93 -51.93 -0.41 0.75 16 39 H 0.01 0.33 7.74 -51.93 -0.40 -0.07 16 40 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 41 H 0.09 2.34 6.03 -51.93 -0.31 2.03 16 42 H 0.02 0.39 6.94 -51.93 -0.36 0.03 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 44 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 356.05 15.07 5.37 5.37 Total: -1.00 -33.75 356.05 -8.62 -42.37 By element: Atomic # 1 Polarization: 11.28 SS G_CDS: -5.77 Total: 5.51 kcal Atomic # 6 Polarization: 9.15 SS G_CDS: -3.40 Total: 5.75 kcal Atomic # 7 Polarization: -66.11 SS G_CDS: 0.14 Total: -65.97 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.07 Total: -9.73 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -33.75 -8.62 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045594755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.251 kcal (2) G-P(sol) polarization free energy of solvation -33.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds