Wall clock time and date at job start Tue Mar 31 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46494 * 109.46135 * 2 1 4 4 C 1.34782 * 120.00331 * 60.30165 * 3 2 1 5 5 O 1.21555 * 119.99612 * 359.72447 * 4 3 2 6 6 C 1.47872 * 120.00381 * 179.72666 * 4 3 2 7 7 C 1.39899 * 125.69626 * 180.02562 * 6 4 3 8 8 C 1.38577 * 107.59664 * 179.97438 * 7 6 4 9 9 N 1.34118 * 132.34554 * 179.97438 * 8 7 6 10 10 C 1.31126 * 120.84703 * 179.97438 * 9 8 7 11 11 C 1.40349 * 120.29702 * 0.02562 * 10 9 8 12 12 C 1.35454 * 119.46045 * 359.97438 * 11 10 9 13 13 N 1.36669 * 119.14548 * 0.02562 * 12 11 10 14 14 N 1.32380 * 125.69535 * 359.68696 * 6 4 3 15 15 C 1.53039 * 109.44864 * 119.96511 * 2 1 3 16 16 C 1.53191 * 109.31322 * 181.37895 * 15 2 1 17 17 N 1.46921 * 108.77919 * 305.36403 * 16 15 2 18 18 C 1.36939 * 120.63547 * 233.63626 * 17 16 15 19 19 H 1.08000 * 119.99772 * 27.65294 * 18 17 16 20 20 C 1.38810 * 120.00122 * 207.66257 * 18 17 16 21 21 N 1.31623 * 119.99908 * 17.36034 * 20 18 17 22 22 Si 1.86793 * 119.99964 * 197.35703 * 20 18 17 23 23 H 1.48500 * 109.47369 * 90.00272 * 22 20 18 24 24 H 1.48507 * 109.47218 * 209.99881 * 22 20 18 25 25 H 1.48505 * 109.47347 * 330.00035 * 22 20 18 26 26 C 1.46933 * 118.73676 * 53.60538 * 17 16 15 27 27 C 1.53042 * 109.46125 * 240.02490 * 2 1 3 28 28 H 1.09004 * 109.47187 * 59.99902 * 1 2 3 29 29 H 1.08997 * 109.47382 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47226 * 300.00076 * 1 2 3 31 31 H 0.97001 * 120.00226 * 240.02785 * 3 2 1 32 32 H 1.08000 * 126.20119 * 359.97438 * 7 6 4 33 33 H 1.08000 * 119.85287 * 179.97438 * 10 9 8 34 34 H 1.07995 * 120.27098 * 180.02562 * 11 10 9 35 35 H 1.08007 * 120.42852 * 180.02562 * 12 11 10 36 36 H 1.09002 * 109.49643 * 301.33115 * 15 2 1 37 37 H 1.09002 * 109.50154 * 61.42755 * 15 2 1 38 38 H 1.09004 * 109.58579 * 185.57700 * 16 15 2 39 39 H 1.09001 * 109.58808 * 65.15773 * 16 15 2 40 40 H 0.96999 * 119.99900 * 180.02562 * 21 20 18 41 41 H 1.09003 * 109.58318 * 186.60620 * 26 17 16 42 42 H 1.08993 * 109.70068 * 66.25077 * 26 17 16 43 43 H 1.08995 * 109.49763 * 298.58286 * 27 2 1 44 44 H 1.09002 * 109.49613 * 58.64700 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0180 1.3812 0.0000 4 6 1.6974 2.2094 1.0139 5 8 0.9990 1.8116 1.9258 6 6 2.1950 3.6018 1.0169 7 6 1.9372 4.5587 2.0044 8 6 2.5828 5.7276 1.6339 9 7 2.6652 6.9358 2.2102 10 6 3.3534 7.9018 1.6512 11 6 4.0178 7.6852 0.4340 12 6 3.9428 6.4696 -0.1588 13 7 3.2192 5.4789 0.4435 14 7 2.9641 4.1493 0.0889 15 6 2.0395 -0.7208 1.2502 16 6 3.5710 -0.6889 1.2645 17 7 4.0677 -1.2493 0.0004 18 6 4.9753 -2.2747 0.0006 19 1 5.0078 -2.9669 0.8290 20 6 5.8535 -2.4243 -1.0639 21 7 6.0602 -1.4227 -1.8924 22 14 6.7421 -4.0472 -1.3205 23 1 5.9245 -4.9265 -2.1943 24 1 8.0571 -3.7954 -1.9631 25 1 6.9514 -4.7100 -0.0081 26 6 3.5714 -0.6890 -1.2640 27 6 2.0399 -0.7210 -1.2500 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 2.5753 1.6988 -0.7277 32 1 1.3428 4.4128 2.8943 33 1 3.4087 8.8688 2.1291 34 1 4.5849 8.4810 -0.0258 35 1 4.4483 6.2856 -1.0954 36 1 1.6569 -0.2206 2.1398 37 1 1.6973 -1.7556 1.2385 38 1 3.9411 -1.2849 2.0988 39 1 3.9142 0.3405 1.3677 40 1 6.6737 -1.5274 -2.6364 41 1 3.9417 -1.2851 -2.0980 42 1 3.9145 0.3401 -1.3696 43 1 1.6976 -1.7557 -1.2382 44 1 1.6570 -0.2212 -2.1398 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001045594755.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:41 Heat of formation + Delta-G solvation = 91.572558 kcal Electronic energy + Delta-G solvation = -28371.188645 eV Core-core repulsion = 24518.766076 eV Total energy + Delta-G solvation = -3852.422569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.159 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -43.41226 -41.51044 -39.34542 -38.52844 -36.17251 -35.09238 -33.84070 -32.81742 -31.80906 -31.54952 -30.25899 -29.10182 -26.50539 -25.90561 -25.04350 -24.02698 -23.70214 -22.60408 -21.46845 -20.25552 -19.49154 -18.85550 -18.75492 -17.58920 -17.28683 -16.88014 -16.64538 -16.43208 -16.06465 -15.67806 -15.41365 -15.30023 -15.09337 -14.87758 -14.64691 -14.53138 -14.10640 -13.85847 -13.64798 -13.35645 -13.11749 -13.07274 -12.88807 -12.64063 -12.55713 -12.47416 -12.34406 -12.16844 -12.02215 -11.78498 -11.55054 -11.34977 -10.96130 -10.81105 -10.64816 -10.54438 -10.07037 -9.12981 -8.68558 -7.87999 -5.32860 -0.51916 -0.32815 0.70998 0.87790 1.46771 1.47935 1.56740 1.96753 2.17863 2.40304 2.50818 2.83525 2.89152 3.26236 3.56387 3.63244 3.69294 3.87574 3.99396 4.03014 4.10150 4.22009 4.36545 4.45650 4.52222 4.61526 4.62055 4.72138 4.74594 4.87034 4.89966 4.95337 5.05414 5.09402 5.11618 5.17133 5.27126 5.32934 5.39214 5.45372 5.58592 5.63140 5.73702 6.03528 6.38004 6.48505 6.55966 7.03538 7.14559 7.84136 8.37153 9.18016 Molecular weight = 329.16amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.003315 C = 0.002909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.726186 B = 8444.545339 C = 9621.482617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.183 3.817 3 N -0.689 5.689 4 C 0.600 3.400 5 O -0.541 6.541 6 C 0.059 3.941 7 C -0.233 4.233 8 C 0.246 3.754 9 N -0.492 5.492 10 C 0.189 3.811 11 C -0.187 4.187 12 C 0.130 3.870 13 N -0.308 5.308 14 N -0.301 5.301 15 C -0.132 4.132 16 C 0.152 3.848 17 N -0.605 5.605 18 C -0.265 4.265 19 H 0.062 0.938 20 C -0.047 4.047 21 N -0.931 5.931 22 Si 0.967 3.033 23 H -0.282 1.282 24 H -0.295 1.295 25 H -0.273 1.273 26 C 0.179 3.821 27 C -0.131 4.131 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.406 0.594 32 H 0.168 0.832 33 H 0.230 0.770 34 H 0.224 0.776 35 H 0.206 0.794 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.045 0.955 39 H -0.003 1.003 40 H 0.250 0.750 41 H 0.059 0.941 42 H 0.000 1.000 43 H 0.077 0.923 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.018 20.788 1.197 21.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.098 3.902 3 N -0.339 5.339 4 C 0.383 3.617 5 O -0.418 6.418 6 C -0.099 4.099 7 C -0.265 4.265 8 C 0.018 3.982 9 N -0.204 5.204 10 C 0.006 3.994 11 C -0.210 4.210 12 C -0.001 4.001 13 N -0.082 5.082 14 N -0.132 5.132 15 C -0.171 4.171 16 C 0.026 3.974 17 N -0.329 5.329 18 C -0.395 4.395 19 H 0.080 0.920 20 C -0.242 4.242 21 N -0.577 5.577 22 Si 0.796 3.204 23 H -0.209 1.209 24 H -0.221 1.221 25 H -0.198 1.198 26 C 0.053 3.947 27 C -0.170 4.170 28 H 0.083 0.917 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.243 0.757 32 H 0.185 0.815 33 H 0.246 0.754 34 H 0.241 0.759 35 H 0.223 0.777 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.018 0.982 43 H 0.096 0.904 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -7.369 20.031 1.406 21.390 hybrid contribution 1.154 -0.743 -0.509 1.463 sum -6.215 19.289 0.897 20.285 Atomic orbital electron populations 1.22132 0.92791 1.03255 1.02725 1.20380 0.94432 0.79311 0.96059 1.46060 1.51853 1.11948 1.24037 1.16964 0.79918 0.82461 0.82359 1.90704 1.38876 1.75690 1.36501 1.22068 0.97637 0.95678 0.94497 1.20985 1.11520 0.89688 1.04307 1.20634 0.96919 0.94634 0.86003 1.68369 1.21526 0.97843 1.32712 1.24485 0.85459 0.98234 0.91181 1.22566 1.03914 0.96964 0.97571 1.23034 0.91655 0.85358 1.00085 1.47396 1.33676 1.09629 1.17488 1.78083 1.23513 0.88171 1.23402 1.22264 0.96265 1.00436 0.98167 1.20849 0.93108 0.94728 0.88731 1.44280 1.48347 1.39486 1.00764 1.19497 1.10310 1.03482 1.06204 0.92008 1.25745 0.98191 1.00407 0.99893 1.70180 1.38589 1.30595 1.18338 0.85269 0.77285 0.79956 0.77918 1.20906 1.22127 1.19780 1.20576 0.89824 0.95281 0.88981 1.22336 0.97722 1.00816 0.96128 0.91707 0.90335 0.91817 0.75743 0.81454 0.75362 0.75936 0.77684 0.90805 0.90931 0.93667 0.98462 0.94061 0.92215 0.98206 0.90433 0.90071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.44 8.40 71.98 0.60 -3.84 16 2 C 0.18 6.37 0.66 3.63 0.00 6.37 16 3 N -0.69 -24.41 4.10 -425.61 -1.74 -26.15 16 4 C 0.60 21.93 7.25 86.79 0.63 22.55 16 5 O -0.54 -21.25 13.10 -3.89 -0.05 -21.30 16 6 C 0.06 2.05 7.05 42.02 0.30 2.35 16 7 C -0.23 -7.49 10.65 22.75 0.24 -7.24 16 8 C 0.25 6.81 7.90 132.99 1.05 7.86 16 9 N -0.49 -10.46 10.48 -192.58 -2.02 -12.48 16 10 C 0.19 1.79 11.27 85.31 0.96 2.75 16 11 C -0.19 -1.12 10.05 22.14 0.22 -0.89 16 12 C 0.13 1.86 11.30 83.30 0.94 2.80 16 13 N -0.31 -8.00 3.90 -192.50 -0.75 -8.75 16 14 N -0.30 -9.83 12.34 -48.79 -0.60 -10.43 16 15 C -0.13 -5.07 4.66 30.67 0.14 -4.93 16 16 C 0.15 6.98 6.26 86.36 0.54 7.52 16 17 N -0.61 -31.20 3.00 -699.09 -2.09 -33.30 16 18 C -0.26 -14.90 9.58 84.03 0.81 -14.10 16 19 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 20 C -0.05 -2.62 4.91 84.86 0.42 -2.21 16 21 N -0.93 -54.76 11.19 21.65 0.24 -54.52 16 22 Si 0.97 45.21 29.59 68.60 2.03 47.24 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 C 0.18 8.49 5.04 86.36 0.43 8.92 16 27 C -0.13 -4.77 4.96 30.67 0.15 -4.61 16 28 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.06 2.04 6.18 -2.39 -0.01 2.03 16 31 H 0.41 14.59 6.95 -92.71 -0.64 13.95 16 32 H 0.17 5.16 8.06 -2.91 -0.02 5.14 16 33 H 0.23 -0.21 8.06 -2.91 -0.02 -0.23 16 34 H 0.22 -1.08 8.06 -2.91 -0.02 -1.10 16 35 H 0.21 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.07 2.88 6.19 -2.39 -0.01 2.87 16 37 H 0.07 2.70 8.14 -2.39 -0.02 2.69 16 38 H 0.04 2.09 7.93 -2.38 -0.02 2.07 16 39 H 0.00 -0.13 7.74 -2.39 -0.02 -0.14 16 40 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 41 H 0.06 3.20 6.03 -2.39 -0.01 3.18 16 42 H 0.00 0.00 6.94 -2.39 -0.02 -0.02 16 43 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 44 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -78.10 356.05 2.85 -75.25 By element: Atomic # 1 Polarization: 20.74 SS G_CDS: 0.39 Total: 21.13 kcal Atomic # 6 Polarization: 15.86 SS G_CDS: 7.44 Total: 23.30 kcal Atomic # 7 Polarization: -138.67 SS G_CDS: -6.97 Total: -145.63 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.05 Total: -21.30 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -78.10 2.85 -75.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001045594755.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 166.821 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds