Wall clock time and date at job start Tue Mar 31 2020 04:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00120 * 2 1 4 4 H 1.48501 * 109.46943 * 275.00117 * 3 2 1 5 5 H 1.48505 * 109.46939 * 34.99737 * 3 2 1 6 6 H 1.48494 * 109.47399 * 154.99446 * 3 2 1 7 7 C 1.38820 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 185.69681 * 7 2 1 9 9 N 1.36936 * 119.99490 * 5.97358 * 7 2 1 10 10 C 1.46588 * 125.30966 * 175.97212 * 9 7 2 11 11 C 1.53747 * 108.11293 * 181.24527 * 10 9 7 12 12 H 1.09000 * 113.20114 * 251.69760 * 11 10 9 13 13 C 1.55168 * 108.31151 * 125.22568 * 11 10 9 14 14 C 1.55839 * 101.29497 * 283.96873 * 13 11 10 15 15 N 1.47400 * 105.35650 * 323.91718 * 14 13 11 16 16 C 1.34774 * 125.59010 * 203.76352 * 15 14 13 17 17 O 1.21358 * 120.00094 * 180.02562 * 16 15 14 18 18 C 1.49350 * 119.99748 * 0.02562 * 16 15 14 19 19 O 1.21372 * 120.00282 * 0.02562 * 18 16 15 20 20 N 1.34780 * 120.00079 * 180.02562 * 18 16 15 21 21 C 1.39728 * 120.00307 * 183.91822 * 20 18 16 22 22 C 1.38934 * 120.07002 * 324.50785 * 21 20 18 23 23 C 1.38097 * 119.91880 * 179.77093 * 22 21 20 24 24 C 1.38292 * 120.07536 * 0.48468 * 23 22 21 25 25 C 1.38293 * 120.15704 * 359.79016 * 24 23 22 26 26 C 1.38098 * 120.07326 * 359.95325 * 25 24 23 27 27 C 1.46712 * 108.82467 * 23.77583 * 15 14 13 28 28 H 1.09003 * 111.53392 * 236.10596 * 27 15 14 29 29 C 1.46713 * 125.31132 * 355.66489 * 9 7 2 30 30 H 0.97001 * 120.00183 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.74336 * 300.91929 * 10 9 7 32 32 H 1.09004 * 109.74434 * 61.58493 * 10 9 7 33 33 H 1.08996 * 110.97387 * 43.49612 * 13 11 10 34 34 H 1.09004 * 110.97474 * 167.27628 * 13 11 10 35 35 H 1.08995 * 110.63230 * 204.62824 * 14 13 11 36 36 H 1.09003 * 109.67714 * 82.70123 * 14 13 11 37 37 H 0.97001 * 120.00230 * 3.91156 * 20 18 16 38 38 H 1.07999 * 120.04013 * 359.97438 * 22 21 20 39 39 H 1.08004 * 119.96297 * 180.25282 * 23 22 21 40 40 H 1.08006 * 119.92391 * 179.76723 * 24 23 22 41 41 H 1.07993 * 119.96420 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.03873 * 179.97438 * 26 25 24 43 43 H 1.08991 * 109.98672 * 281.44074 * 29 9 7 44 44 H 1.08998 * 109.98902 * 42.75722 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4120 0.5918 7 6 2.0103 -1.2022 0.0005 8 1 3.0863 -1.2044 0.0934 9 7 1.3312 -2.3849 -0.1224 10 6 1.9491 -3.7106 -0.2196 11 6 0.8274 -4.7506 -0.3750 12 1 0.6822 -5.3618 0.5157 13 6 1.1103 -5.5856 -1.6518 14 6 0.6871 -4.5861 -2.7701 15 7 -0.4749 -3.8607 -2.2260 16 6 -1.4288 -3.2481 -2.9549 17 8 -2.3445 -2.6777 -2.3992 18 6 -1.3588 -3.2713 -4.4466 19 8 -0.4432 -3.8421 -5.0024 20 7 -2.3123 -2.6582 -5.1756 21 6 -2.2924 -2.7490 -6.5698 22 6 -1.0804 -2.7698 -7.2488 23 6 -1.0643 -2.8643 -8.6264 24 6 -2.2527 -2.9281 -9.3307 25 6 -3.4609 -2.9019 -8.6584 26 6 -3.4844 -2.8128 -7.2805 27 6 -0.4229 -3.9145 -0.7608 28 1 -1.3356 -4.3398 -0.3433 29 6 -0.1286 -2.5235 -0.1708 30 1 -0.4850 0.8400 -0.0004 31 1 2.6078 -3.7470 -1.0873 32 1 2.5204 -3.9179 0.6853 33 1 2.1639 -5.8576 -1.7147 34 1 0.4771 -6.4723 -1.6864 35 1 0.4093 -5.1210 -3.6783 36 1 1.5049 -3.8947 -2.9731 37 1 -3.0126 -2.1541 -4.7324 38 1 -0.1521 -2.7154 -6.6996 39 1 -0.1224 -2.8847 -9.1546 40 1 -2.2372 -2.9982 -10.4083 41 1 -4.3871 -2.9515 -9.2115 42 1 -4.4283 -2.7919 -6.7561 43 1 -0.5437 -2.4469 0.8340 44 1 -0.5552 -1.7508 -0.8104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075985321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:30 Heat of formation + Delta-G solvation = 11.508973 kcal Electronic energy + Delta-G solvation = -28546.111341 eV Core-core repulsion = 24657.924203 eV Total energy + Delta-G solvation = -3888.187137 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.02887 -39.84408 -38.51410 -37.54172 -35.22002 -34.49533 -32.19740 -31.05053 -30.84400 -29.85779 -28.91803 -26.63273 -24.97551 -24.64633 -23.03301 -22.58344 -21.59699 -20.65464 -19.78697 -19.14539 -17.92994 -17.17313 -16.95926 -16.65263 -16.18603 -15.87951 -15.37098 -14.84061 -14.56432 -14.49185 -14.11076 -13.80602 -13.73670 -13.42317 -13.31100 -13.09939 -12.88016 -12.50586 -12.09214 -12.00737 -11.90199 -11.57672 -11.45026 -11.25776 -11.04565 -10.97556 -10.73217 -10.51781 -10.44111 -10.26886 -10.13065 -9.84251 -9.68159 -9.26583 -9.03329 -8.59478 -8.35164 -8.21741 -6.82018 -5.66098 -3.05084 1.00367 1.26859 1.74920 2.41931 3.39794 3.40544 3.45525 3.47923 3.64536 3.71541 4.42101 4.49586 4.76073 4.80964 4.83520 4.93309 5.01580 5.18645 5.26066 5.38206 5.44012 5.46210 5.55430 5.63667 5.78641 5.86337 5.88275 5.98359 6.05407 6.16396 6.17872 6.25123 6.31314 6.33811 6.39595 6.43873 6.50454 6.65544 6.81206 6.87430 7.06289 7.38448 7.66020 7.69568 7.80900 7.90715 8.25500 8.36632 9.22719 9.84307 10.46778 11.39636 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.003722 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.303517 B = 7520.856046 C = 8600.052246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.007 4.007 3 Si 0.910 3.090 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.229 4.229 8 H 0.078 0.922 9 N -0.600 5.600 10 C 0.141 3.859 11 C -0.110 4.110 12 H 0.098 0.902 13 C -0.126 4.126 14 C 0.099 3.901 15 N -0.562 5.562 16 C 0.520 3.480 17 O -0.513 6.513 18 C 0.516 3.484 19 O -0.499 6.499 20 N -0.649 5.649 21 C 0.146 3.854 22 C -0.119 4.119 23 C -0.102 4.102 24 C -0.137 4.137 25 C -0.104 4.104 26 C -0.142 4.142 27 C 0.111 3.889 28 H 0.083 0.917 29 C 0.153 3.847 30 H 0.253 0.747 31 H 0.027 0.973 32 H 0.022 0.978 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.093 0.907 36 H 0.074 0.926 37 H 0.424 0.576 38 H 0.140 0.860 39 H 0.125 0.875 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.127 0.873 43 H 0.026 0.974 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.949 -10.704 -13.988 18.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.203 4.203 3 Si 0.741 3.259 4 H -0.217 1.217 5 H -0.217 1.217 6 H -0.206 1.206 7 C -0.357 4.357 8 H 0.096 0.904 9 N -0.326 5.326 10 C 0.015 3.985 11 C -0.129 4.129 12 H 0.116 0.884 13 C -0.164 4.164 14 C -0.024 4.024 15 N -0.295 5.295 16 C 0.302 3.698 17 O -0.389 6.389 18 C 0.299 3.701 19 O -0.373 6.373 20 N -0.296 5.296 21 C 0.052 3.948 22 C -0.139 4.139 23 C -0.121 4.121 24 C -0.156 4.156 25 C -0.122 4.122 26 C -0.163 4.163 27 C 0.008 3.992 28 H 0.101 0.899 29 C 0.028 3.972 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.040 0.960 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.092 0.908 37 H 0.262 0.738 38 H 0.158 0.842 39 H 0.143 0.857 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.145 0.855 43 H 0.044 0.956 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -4.867 -10.554 -14.017 18.208 hybrid contribution 0.157 1.172 0.305 1.222 sum -4.709 -9.382 -13.712 17.269 Atomic orbital electron populations 1.69886 1.04781 1.24918 1.56628 1.24832 0.95681 0.97693 1.02097 0.86122 0.78648 0.83670 0.77479 1.21689 1.21694 1.20631 1.19029 0.90902 0.82428 1.43388 0.90415 1.44181 1.01506 1.00564 1.86398 1.21197 0.93498 0.85707 0.98093 1.23074 0.95655 0.96497 0.97686 0.88428 1.23018 1.01836 0.97200 0.94343 1.22746 0.88180 0.94416 0.97015 1.47980 1.23324 1.50714 1.07515 1.19172 0.83124 0.80964 0.86537 1.90797 1.33734 1.42391 1.72008 1.20492 0.82055 0.78602 0.88976 1.90689 1.32087 1.41772 1.72761 1.43176 1.30370 1.51453 1.04624 1.17795 0.94442 1.00608 0.81941 1.21365 0.97827 1.00268 0.94433 1.21078 0.98392 0.99051 0.93562 1.21156 0.92530 1.01946 0.99931 1.20924 0.98175 0.99693 0.93432 1.20960 0.96658 1.03971 0.94682 1.22843 0.97587 1.00414 0.78344 0.89864 1.21778 0.84967 0.91577 0.98919 0.93661 0.95519 0.96032 0.89568 0.91268 0.88882 0.90770 0.73818 0.84211 0.85655 0.86036 0.85673 0.85488 0.95629 0.87508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.37 10.17 55.49 0.56 -26.80 16 2 C -0.01 -0.19 5.48 -17.43 -0.10 -0.29 16 3 Si 0.91 22.43 29.56 -169.99 -5.02 17.41 16 4 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.23 -6.43 10.24 -15.06 -0.15 -6.58 16 8 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 9 N -0.60 -15.30 3.38 -171.96 -0.58 -15.88 16 10 C 0.14 2.84 6.43 -3.61 -0.02 2.81 16 11 C -0.11 -1.79 4.19 -87.88 -0.37 -2.16 16 12 H 0.10 1.39 8.14 -51.93 -0.42 0.96 16 13 C -0.13 -1.67 6.38 -24.07 -0.15 -1.83 16 14 C 0.10 1.58 5.64 -2.03 -0.01 1.57 16 15 N -0.56 -10.48 3.04 -162.09 -0.49 -10.97 16 16 C 0.52 9.93 7.57 -11.63 -0.09 9.84 16 17 O -0.51 -10.90 16.22 5.49 0.09 -10.81 16 18 C 0.52 8.57 7.69 -11.63 -0.09 8.48 16 19 O -0.50 -8.51 11.24 5.48 0.06 -8.45 16 20 N -0.65 -9.14 5.32 -10.29 -0.05 -9.20 16 21 C 0.15 1.90 6.29 -83.75 -0.53 1.38 16 22 C -0.12 -1.57 8.69 -39.38 -0.34 -1.92 16 23 C -0.10 -1.10 10.04 -39.61 -0.40 -1.49 16 24 C -0.14 -1.27 10.04 -39.54 -0.40 -1.67 16 25 C -0.10 -0.95 10.04 -39.61 -0.40 -1.35 16 26 C -0.14 -1.50 9.97 -39.38 -0.39 -1.90 16 27 C 0.11 2.16 3.63 -66.12 -0.24 1.92 16 28 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 29 C 0.15 3.81 5.28 -3.44 -0.02 3.79 16 30 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 31 H 0.03 0.53 6.85 -51.93 -0.36 0.18 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.09 1.00 7.97 -51.93 -0.41 0.59 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.40 6.13 -51.93 -0.32 1.08 16 36 H 0.07 1.32 7.55 -51.93 -0.39 0.93 16 37 H 0.42 5.43 8.30 -40.82 -0.34 5.09 16 38 H 0.14 2.06 6.28 -52.49 -0.33 1.74 16 39 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 40 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 42 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.11 3.07 5.29 -51.93 -0.27 2.80 16 LS Contribution 355.28 15.07 5.35 5.35 Total: -1.00 -33.06 355.28 -9.55 -42.62 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -5.77 Total: 6.13 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: -3.70 Total: 10.60 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.56 Total: -62.85 kcal Atomic # 8 Polarization: -19.41 SS G_CDS: 0.15 Total: -19.26 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.06 -9.55 -42.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075985321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.127 kcal (2) G-P(sol) polarization free energy of solvation -33.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds