Wall clock time and date at job start Tue Mar 31 2020 04:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86802 * 120.00120 * 2 1 4 4 H 1.48501 * 109.46943 * 275.00117 * 3 2 1 5 5 H 1.48505 * 109.46939 * 34.99737 * 3 2 1 6 6 H 1.48494 * 109.47399 * 154.99446 * 3 2 1 7 7 C 1.38820 * 120.00343 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99993 * 185.69681 * 7 2 1 9 9 N 1.36936 * 119.99490 * 5.97358 * 7 2 1 10 10 C 1.46588 * 125.30966 * 175.97212 * 9 7 2 11 11 C 1.53747 * 108.11293 * 181.24527 * 10 9 7 12 12 H 1.09000 * 113.20114 * 251.69760 * 11 10 9 13 13 C 1.55168 * 108.31151 * 125.22568 * 11 10 9 14 14 C 1.55839 * 101.29497 * 283.96873 * 13 11 10 15 15 N 1.47400 * 105.35650 * 323.91718 * 14 13 11 16 16 C 1.34774 * 125.59010 * 203.76352 * 15 14 13 17 17 O 1.21358 * 120.00094 * 180.02562 * 16 15 14 18 18 C 1.49350 * 119.99748 * 0.02562 * 16 15 14 19 19 O 1.21372 * 120.00282 * 0.02562 * 18 16 15 20 20 N 1.34780 * 120.00079 * 180.02562 * 18 16 15 21 21 C 1.39728 * 120.00307 * 183.91822 * 20 18 16 22 22 C 1.38934 * 120.07002 * 324.50785 * 21 20 18 23 23 C 1.38097 * 119.91880 * 179.77093 * 22 21 20 24 24 C 1.38292 * 120.07536 * 0.48468 * 23 22 21 25 25 C 1.38293 * 120.15704 * 359.79016 * 24 23 22 26 26 C 1.38098 * 120.07326 * 359.95325 * 25 24 23 27 27 C 1.46712 * 108.82467 * 23.77583 * 15 14 13 28 28 H 1.09003 * 111.53392 * 236.10596 * 27 15 14 29 29 C 1.46713 * 125.31132 * 355.66489 * 9 7 2 30 30 H 0.97001 * 120.00183 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.74336 * 300.91929 * 10 9 7 32 32 H 1.09004 * 109.74434 * 61.58493 * 10 9 7 33 33 H 1.08996 * 110.97387 * 43.49612 * 13 11 10 34 34 H 1.09004 * 110.97474 * 167.27628 * 13 11 10 35 35 H 1.08995 * 110.63230 * 204.62824 * 14 13 11 36 36 H 1.09003 * 109.67714 * 82.70123 * 14 13 11 37 37 H 0.97001 * 120.00230 * 3.91156 * 20 18 16 38 38 H 1.07999 * 120.04013 * 359.97438 * 22 21 20 39 39 H 1.08004 * 119.96297 * 180.25282 * 23 22 21 40 40 H 1.08006 * 119.92391 * 179.76723 * 24 23 22 41 41 H 1.07993 * 119.96420 * 179.97438 * 25 24 23 42 42 H 1.08001 * 120.03873 * 179.97438 * 26 25 24 43 43 H 1.08991 * 109.98672 * 281.44074 * 29 9 7 44 44 H 1.08998 * 109.98902 * 42.75722 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3920 2.1074 -1.3948 5 1 1.5044 2.6199 0.8030 6 1 3.5965 1.4120 0.5918 7 6 2.0103 -1.2022 0.0005 8 1 3.0863 -1.2044 0.0934 9 7 1.3312 -2.3849 -0.1224 10 6 1.9491 -3.7106 -0.2196 11 6 0.8274 -4.7506 -0.3750 12 1 0.6822 -5.3618 0.5157 13 6 1.1103 -5.5856 -1.6518 14 6 0.6871 -4.5861 -2.7701 15 7 -0.4749 -3.8607 -2.2260 16 6 -1.4288 -3.2481 -2.9549 17 8 -2.3445 -2.6777 -2.3992 18 6 -1.3588 -3.2713 -4.4466 19 8 -0.4432 -3.8421 -5.0024 20 7 -2.3123 -2.6582 -5.1756 21 6 -2.2924 -2.7490 -6.5698 22 6 -1.0804 -2.7698 -7.2488 23 6 -1.0643 -2.8643 -8.6264 24 6 -2.2527 -2.9281 -9.3307 25 6 -3.4609 -2.9019 -8.6584 26 6 -3.4844 -2.8128 -7.2805 27 6 -0.4229 -3.9145 -0.7608 28 1 -1.3356 -4.3398 -0.3433 29 6 -0.1286 -2.5235 -0.1708 30 1 -0.4850 0.8400 -0.0004 31 1 2.6078 -3.7470 -1.0873 32 1 2.5204 -3.9179 0.6853 33 1 2.1639 -5.8576 -1.7147 34 1 0.4771 -6.4723 -1.6864 35 1 0.4093 -5.1210 -3.6783 36 1 1.5049 -3.8947 -2.9731 37 1 -3.0126 -2.1541 -4.7324 38 1 -0.1521 -2.7154 -6.6996 39 1 -0.1224 -2.8847 -9.1546 40 1 -2.2372 -2.9982 -10.4083 41 1 -4.3871 -2.9515 -9.2115 42 1 -4.4283 -2.7919 -6.7561 43 1 -0.5437 -2.4469 0.8340 44 1 -0.5552 -1.7508 -0.8104 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075985321.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:53:29 Heat of formation + Delta-G solvation = -10.309499 kcal Electronic energy + Delta-G solvation = -28547.057461 eV Core-core repulsion = 24657.924203 eV Total energy + Delta-G solvation = -3889.133257 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.32966 -41.13618 -39.67153 -38.96725 -36.71048 -35.89861 -33.97448 -32.48078 -31.87325 -30.92673 -30.56789 -28.21578 -26.67708 -26.20649 -24.03396 -23.65639 -22.94749 -22.15989 -21.15692 -20.59395 -19.18733 -18.82588 -18.37476 -18.05313 -17.32790 -17.17036 -16.81584 -16.50653 -15.95056 -15.68152 -15.63223 -15.06645 -14.95939 -14.77377 -14.61433 -14.30567 -14.10037 -13.84371 -13.74281 -13.62332 -13.13422 -13.02415 -12.99190 -12.82635 -12.48765 -12.39274 -12.22793 -12.09935 -11.87963 -11.82021 -11.61287 -11.47164 -11.42871 -10.78488 -10.56619 -9.89188 -9.80653 -9.25462 -8.88776 -7.82603 -5.23310 -0.07191 0.44098 0.56358 1.14474 1.40920 1.42975 1.52072 2.02041 2.37483 2.45622 2.84587 3.13119 3.29426 3.49961 3.56629 3.74001 3.95993 3.97069 4.04255 4.20120 4.29511 4.39969 4.44840 4.49188 4.51563 4.54691 4.64298 4.68899 4.85854 4.90628 5.06991 5.09323 5.12060 5.20498 5.25543 5.27689 5.34070 5.39412 5.49873 5.52814 5.59386 5.82130 5.91269 6.03895 6.25238 6.28692 6.54707 6.80948 7.07268 7.77835 8.38742 9.21112 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.012786 B = 0.003722 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.303517 B = 7520.856046 C = 8600.052246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.067 4.067 3 Si 0.975 3.025 4 H -0.292 1.292 5 H -0.295 1.295 6 H -0.263 1.263 7 C -0.239 4.239 8 H 0.084 0.916 9 N -0.621 5.621 10 C 0.133 3.867 11 C -0.095 4.095 12 H 0.130 0.870 13 C -0.106 4.106 14 C 0.096 3.904 15 N -0.566 5.566 16 C 0.510 3.490 17 O -0.546 6.546 18 C 0.517 3.483 19 O -0.508 6.508 20 N -0.639 5.639 21 C 0.116 3.884 22 C -0.143 4.143 23 C -0.109 4.109 24 C -0.129 4.129 25 C -0.100 4.100 26 C -0.142 4.142 27 C 0.114 3.886 28 H 0.095 0.905 29 C 0.161 3.839 30 H 0.243 0.757 31 H 0.033 0.967 32 H 0.031 0.969 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.050 0.950 37 H 0.427 0.573 38 H 0.114 0.886 39 H 0.142 0.858 40 H 0.154 0.846 41 H 0.159 0.841 42 H 0.145 0.855 43 H -0.009 1.009 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.603 -12.772 -16.049 21.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.260 4.260 3 Si 0.803 3.197 4 H -0.219 1.219 5 H -0.222 1.222 6 H -0.188 1.188 7 C -0.368 4.368 8 H 0.102 0.898 9 N -0.347 5.347 10 C 0.008 3.992 11 C -0.114 4.114 12 H 0.148 0.852 13 C -0.144 4.144 14 C -0.025 4.025 15 N -0.298 5.298 16 C 0.293 3.707 17 O -0.424 6.424 18 C 0.299 3.701 19 O -0.383 6.383 20 N -0.285 5.285 21 C 0.023 3.977 22 C -0.163 4.163 23 C -0.127 4.127 24 C -0.147 4.147 25 C -0.118 4.118 26 C -0.162 4.162 27 C 0.010 3.990 28 H 0.113 0.887 29 C 0.035 3.965 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.132 0.868 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.266 0.734 38 H 0.132 0.868 39 H 0.160 0.840 40 H 0.172 0.828 41 H 0.177 0.823 42 H 0.163 0.837 43 H 0.008 0.992 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.488 -12.661 -16.104 20.971 hybrid contribution 0.037 1.835 0.857 2.025 sum -4.451 -10.826 -15.247 19.222 Atomic orbital electron populations 1.70179 1.06298 1.24820 1.58202 1.25674 0.96487 1.01086 1.02724 0.85105 0.78060 0.79428 0.77073 1.21891 1.22151 1.18773 1.19443 0.91457 0.83784 1.42120 0.89775 1.44461 1.02021 1.02048 1.86175 1.21469 0.94910 0.84258 0.98516 1.23112 0.91960 0.95743 1.00576 0.85177 1.23055 1.04176 0.96676 0.90455 1.22883 0.86461 0.94409 0.98774 1.48130 1.23833 1.50600 1.07280 1.19755 0.82845 0.80273 0.87840 1.90764 1.35083 1.43601 1.72959 1.20042 0.82798 0.79356 0.87864 1.90674 1.32493 1.42650 1.72454 1.43094 1.29509 1.50552 1.05375 1.18057 0.95572 1.02966 0.81075 1.21321 0.97011 1.02231 0.95720 1.21326 1.00118 0.98710 0.92554 1.21577 0.91794 0.99793 1.01561 1.21376 0.99656 0.97918 0.92850 1.21243 0.96340 1.03049 0.95550 1.22686 0.99765 0.97599 0.78932 0.88712 1.21423 0.84701 0.93941 0.96460 0.94701 0.94885 0.95144 0.86849 0.88106 0.87756 0.93121 0.73450 0.86759 0.84022 0.82813 0.82306 0.83730 0.99153 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.69 10.17 21.65 0.22 -59.47 16 2 C -0.07 -3.95 5.48 84.87 0.46 -3.48 16 3 Si 0.97 47.45 29.56 68.60 2.03 49.47 16 4 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 5 H -0.29 -14.43 7.11 99.48 0.71 -13.72 16 6 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.24 -13.71 10.24 84.04 0.86 -12.85 16 8 H 0.08 4.58 7.83 -2.91 -0.02 4.56 16 9 N -0.62 -32.39 3.38 -697.97 -2.36 -34.75 16 10 C 0.13 5.21 6.43 86.61 0.56 5.76 16 11 C -0.09 -2.87 4.19 -9.02 -0.04 -2.91 16 12 H 0.13 3.18 8.14 -2.39 -0.02 3.16 16 13 C -0.11 -2.43 6.38 32.32 0.21 -2.22 16 14 C 0.10 2.98 5.64 87.19 0.49 3.47 16 15 N -0.57 -21.38 3.04 -785.09 -2.39 -23.77 16 16 C 0.51 20.32 7.57 87.24 0.66 20.98 16 17 O -0.55 -24.58 16.22 -3.27 -0.05 -24.63 16 18 C 0.52 17.88 7.69 87.24 0.67 18.55 16 19 O -0.51 -17.79 11.24 -3.31 -0.04 -17.83 16 20 N -0.64 -18.68 5.32 -304.83 -1.62 -20.30 16 21 C 0.12 3.03 6.29 38.22 0.24 3.27 16 22 C -0.14 -3.82 8.69 22.40 0.19 -3.63 16 23 C -0.11 -2.18 10.04 22.25 0.22 -1.96 16 24 C -0.13 -1.99 10.04 22.30 0.22 -1.76 16 25 C -0.10 -1.51 10.04 22.25 0.22 -1.28 16 26 C -0.14 -2.76 9.97 22.40 0.22 -2.54 16 27 C 0.11 4.43 3.63 46.05 0.17 4.60 16 28 H 0.10 3.45 8.14 -2.39 -0.02 3.43 16 29 C 0.16 8.39 5.28 86.65 0.46 8.85 16 30 H 0.24 15.09 8.31 -92.71 -0.77 14.32 16 31 H 0.03 1.26 6.85 -2.39 -0.02 1.25 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.11 2.09 7.97 -2.39 -0.02 2.07 16 34 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 35 H 0.10 3.02 6.13 -2.39 -0.01 3.00 16 36 H 0.05 1.80 7.55 -2.39 -0.02 1.78 16 37 H 0.43 11.54 8.30 -92.71 -0.77 10.77 16 38 H 0.11 3.58 6.28 -2.91 -0.02 3.57 16 39 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.15 1.39 8.06 -2.91 -0.02 1.36 16 41 H 0.16 1.34 8.06 -2.91 -0.02 1.32 16 42 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 43 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 44 H 0.06 3.83 5.29 -2.39 -0.01 3.82 16 Total: -1.00 -77.49 355.28 1.88 -75.61 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: 0.27 Total: 22.81 kcal Atomic # 6 Polarization: 27.03 SS G_CDS: 5.83 Total: 32.85 kcal Atomic # 7 Polarization: -132.13 SS G_CDS: -6.15 Total: -138.28 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -0.09 Total: -42.46 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.47 kcal Total: -77.49 1.88 -75.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075985321.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.301 kcal (2) G-P(sol) polarization free energy of solvation -77.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds