Wall clock time and date at job start Tue Mar 31 2020 04:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 119.99695 * 2 1 4 4 H 1.48502 * 109.47155 * 0.02562 * 3 2 1 5 5 H 1.48500 * 109.47019 * 119.99973 * 3 2 1 6 6 H 1.48502 * 109.47169 * 239.99910 * 3 2 1 7 7 C 1.38808 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.08011 * 119.99739 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00654 * 359.97438 * 7 2 1 10 10 C 1.46701 * 125.32507 * 179.72126 * 9 7 2 11 11 C 1.54231 * 106.72968 * 161.69237 * 10 9 7 12 12 H 1.08996 * 113.65719 * 263.88283 * 11 10 9 13 13 C 1.55129 * 108.08377 * 136.07566 * 11 10 9 14 14 C 1.54853 * 101.77318 * 286.25255 * 13 11 10 15 15 N 1.47397 * 104.81400 * 322.81253 * 14 13 11 16 16 C 1.34779 * 125.59246 * 204.60938 * 15 14 13 17 17 O 1.21527 * 119.99265 * 354.28268 * 16 15 14 18 18 C 1.48027 * 120.00207 * 174.28450 * 16 15 14 19 19 C 1.39553 * 120.00068 * 4.67259 * 18 16 15 20 20 C 1.37815 * 120.00022 * 179.78696 * 19 18 16 21 21 C 1.39563 * 120.00232 * 0.46635 * 20 19 18 22 22 C 1.48031 * 120.00329 * 179.76515 * 21 20 19 23 23 N 1.34780 * 119.99788 * 0.02562 * 22 21 20 24 24 O 1.21528 * 120.00155 * 180.02562 * 22 21 20 25 25 C 1.39554 * 119.99480 * 359.78258 * 21 20 19 26 26 C 1.37822 * 120.00317 * 359.97438 * 25 21 20 27 27 C 1.46738 * 108.82104 * 24.60972 * 15 14 13 28 28 H 1.08995 * 111.83658 * 235.81505 * 27 15 14 29 29 C 1.46632 * 125.31902 * 0.02632 * 9 7 2 30 30 H 0.96999 * 120.00288 * 359.97438 * 1 2 3 31 31 H 1.09001 * 109.98643 * 281.16700 * 10 9 7 32 32 H 1.09003 * 109.98797 * 42.47474 * 10 9 7 33 33 H 1.08989 * 110.96782 * 44.37721 * 13 11 10 34 34 H 1.09003 * 110.96269 * 168.09856 * 13 11 10 35 35 H 1.08998 * 110.37204 * 81.65330 * 14 13 11 36 36 H 1.09005 * 110.36863 * 203.86805 * 14 13 11 37 37 H 1.07995 * 120.00146 * 0.02562 * 19 18 16 38 38 H 1.08005 * 120.00258 * 180.20519 * 20 19 18 39 39 H 0.96992 * 120.00401 * 0.02562 * 23 22 21 40 40 H 0.97005 * 119.99319 * 179.97438 * 23 22 21 41 41 H 1.07998 * 119.99620 * 180.02562 * 25 21 20 42 42 H 1.07998 * 119.99964 * 180.02562 * 26 25 21 43 43 H 1.09001 * 109.75922 * 300.92338 * 29 9 7 44 44 H 1.09007 * 109.75387 * 61.62489 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 1.2851 2.7465 0.0006 5 1 3.1039 1.6965 1.2125 6 1 3.1039 1.6965 -1.2125 7 6 2.0102 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 7 1.3256 -2.3881 -0.0005 10 6 1.9381 -3.7211 -0.0069 11 6 0.8515 -4.7112 0.4594 12 1 0.8999 -4.9447 1.5230 13 6 0.9038 -5.9548 -0.4665 14 6 0.2758 -5.4043 -1.7706 15 7 -0.7927 -4.4946 -1.3196 16 6 -1.8850 -4.1535 -2.0317 17 8 -1.9992 -4.5236 -3.1836 18 6 -2.9454 -3.3282 -1.4107 19 6 -2.7706 -2.8217 -0.1221 20 6 -3.7560 -2.0496 0.4543 21 6 -4.9328 -1.7824 -0.2468 22 6 -5.9934 -0.9574 0.3743 23 7 -5.8224 -0.4640 1.6169 24 8 -7.0183 -0.7251 -0.2360 25 6 -5.1097 -2.2932 -1.5334 26 6 -4.1221 -3.0611 -2.1118 27 6 -0.4722 -4.0212 0.0319 28 1 -1.2766 -4.2316 0.7365 29 6 -0.1344 -2.5241 -0.0006 30 1 -0.4850 0.8400 0.0004 31 1 2.2693 -3.9741 -1.0141 32 1 2.7834 -3.7460 0.6809 33 1 1.9325 -6.2738 -0.6333 34 1 0.3059 -6.7699 -0.0588 35 1 1.0205 -4.8577 -2.3490 36 1 -0.1417 -6.2181 -2.3636 37 1 -1.8616 -3.0315 0.4219 38 1 -3.6194 -1.6549 1.4503 39 1 -5.0043 -0.6490 2.1039 40 1 -6.5173 0.0769 2.0237 41 1 -6.0201 -2.0860 -2.0761 42 1 -4.2589 -3.4561 -3.1076 43 1 -0.5502 -2.0334 0.8795 44 1 -0.5464 -2.0729 -0.9032 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001076559298.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:31 Heat of formation + Delta-G solvation = 26.155792 kcal Electronic energy + Delta-G solvation = -29059.574609 eV Core-core repulsion = 25172.022606 eV Total energy + Delta-G solvation = -3887.552004 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 329.153 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.91987 -39.78164 -38.32958 -37.41369 -34.77321 -33.87994 -32.89055 -31.78470 -30.81475 -30.21974 -28.90563 -26.81388 -25.03087 -24.64588 -22.73537 -22.34897 -21.01777 -20.66108 -19.95025 -19.19527 -18.01220 -17.38459 -16.94476 -16.72600 -15.75345 -15.61381 -14.93876 -14.81834 -14.73067 -14.39676 -14.20069 -14.00038 -13.77423 -13.33801 -13.29074 -12.94756 -12.90973 -12.36168 -12.25585 -12.17937 -11.96483 -11.56996 -11.21355 -11.15900 -10.93979 -10.78610 -10.62571 -10.34205 -10.22960 -10.11535 -9.95699 -9.80975 -9.77627 -9.56043 -8.89509 -8.79790 -8.71793 -8.30511 -6.96610 -5.83519 -3.17139 0.62797 1.54087 2.60293 3.19581 3.33979 3.34492 3.39484 3.40060 3.46851 4.08702 4.39031 4.52877 4.61711 4.81339 4.90310 4.99371 5.07156 5.11343 5.27492 5.37090 5.45310 5.48070 5.55582 5.58955 5.72144 5.78986 5.83148 5.92907 6.00886 6.13037 6.15662 6.22632 6.33992 6.37155 6.42550 6.52206 6.56817 6.69877 6.73379 6.93502 7.14384 7.26570 7.36738 7.62955 7.81124 8.12281 8.19055 8.40474 9.09529 9.70248 10.32229 11.27818 Molecular weight = 329.15amu Principal moments of inertia in cm(-1) A = 0.009051 B = 0.005421 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3092.989774 B = 5163.484552 C = 7317.518751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.004 4.004 3 Si 0.913 3.087 4 H -0.290 1.290 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.232 4.232 8 H 0.079 0.921 9 N -0.600 5.600 10 C 0.140 3.860 11 C -0.110 4.110 12 H 0.102 0.898 13 C -0.124 4.124 14 C 0.110 3.890 15 N -0.594 5.594 16 C 0.576 3.424 17 O -0.547 6.547 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.085 4.085 21 C -0.123 4.123 22 C 0.566 3.434 23 N -0.850 5.850 24 O -0.545 6.545 25 C -0.076 4.076 26 C -0.073 4.073 27 C 0.084 3.916 28 H 0.094 0.906 29 C 0.166 3.834 30 H 0.254 0.746 31 H 0.022 0.978 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.183 0.817 38 H 0.130 0.870 39 H 0.404 0.596 40 H 0.403 0.597 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.061 0.939 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.233 -9.216 5.445 11.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.200 4.200 3 Si 0.743 3.257 4 H -0.216 1.216 5 H -0.211 1.211 6 H -0.212 1.212 7 C -0.360 4.360 8 H 0.097 0.903 9 N -0.326 5.326 10 C 0.013 3.987 11 C -0.129 4.129 12 H 0.120 0.880 13 C -0.163 4.163 14 C -0.013 4.013 15 N -0.327 5.327 16 C 0.366 3.634 17 O -0.426 6.426 18 C -0.103 4.103 19 C -0.132 4.132 20 C -0.104 4.104 21 C -0.127 4.127 22 C 0.353 3.647 23 N -0.413 5.413 24 O -0.424 6.424 25 C -0.095 4.095 26 C -0.092 4.092 27 C -0.020 4.020 28 H 0.112 0.888 29 C 0.040 3.960 30 H 0.064 0.936 31 H 0.040 0.960 32 H 0.056 0.944 33 H 0.103 0.897 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.093 0.907 37 H 0.199 0.801 38 H 0.148 0.852 39 H 0.234 0.766 40 H 0.234 0.766 41 H 0.156 0.844 42 H 0.156 0.844 43 H 0.078 0.922 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.984 -9.102 4.252 11.693 hybrid contribution 0.673 1.305 0.417 1.527 sum -5.312 -7.797 4.669 10.526 Atomic orbital electron populations 1.69871 1.04762 1.25336 1.56775 1.24769 0.95781 0.97655 1.01841 0.86194 0.78506 0.83099 0.77912 1.21579 1.21134 1.21188 1.18984 0.90460 0.82170 1.44355 0.90346 1.44157 1.01004 1.00179 1.87309 1.21405 0.94067 0.85529 0.97661 1.23214 0.95214 0.94883 0.99601 0.87993 1.22778 1.01424 0.97158 0.94913 1.22214 0.89571 0.92669 0.96814 1.48192 1.21132 1.46458 1.16898 1.17914 0.80806 0.79682 0.85016 1.90723 1.79221 1.56103 1.16534 1.20050 0.94988 0.99992 0.95317 1.23189 1.00728 0.94477 0.94840 1.21217 0.92225 0.97098 0.99821 1.20025 0.95175 1.01141 0.96316 1.18381 0.86305 0.78794 0.81240 1.43760 1.23952 1.56061 1.17573 1.90783 1.29173 1.59753 1.62648 1.21111 0.99220 0.95514 0.93621 1.21182 0.91728 0.96397 0.99919 1.23158 0.96774 0.98761 0.83272 0.88819 1.21706 0.85581 0.86518 1.02163 0.93573 0.96027 0.94363 0.89711 0.90930 0.91012 0.90743 0.80093 0.85242 0.76576 0.76616 0.84442 0.84379 0.92153 0.92519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -24.80 10.24 55.49 0.57 -24.23 16 2 C 0.00 -0.10 5.48 -17.43 -0.10 -0.20 16 3 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 4 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.23 -6.03 10.25 -15.06 -0.15 -6.19 16 8 H 0.08 1.99 7.83 -52.48 -0.41 1.57 16 9 N -0.60 -13.92 3.38 -171.89 -0.58 -14.50 16 10 C 0.14 2.55 6.44 -3.29 -0.02 2.53 16 11 C -0.11 -1.56 4.35 -87.64 -0.38 -1.95 16 12 H 0.10 1.26 8.14 -51.93 -0.42 0.83 16 13 C -0.12 -1.46 6.35 -24.63 -0.16 -1.62 16 14 C 0.11 1.63 6.41 -2.57 -0.02 1.61 16 15 N -0.59 -10.14 2.98 -169.43 -0.51 -10.65 16 16 C 0.58 10.83 7.38 -12.25 -0.09 10.74 16 17 O -0.55 -11.50 16.64 5.34 0.09 -11.41 16 18 C -0.10 -1.72 5.70 -104.90 -0.60 -2.32 16 19 C -0.12 -1.83 7.22 -39.25 -0.28 -2.11 16 20 C -0.08 -1.19 9.53 -39.24 -0.37 -1.56 16 21 C -0.12 -1.80 5.88 -104.90 -0.62 -2.41 16 22 C 0.57 8.01 8.05 -12.24 -0.10 7.91 16 23 N -0.85 -8.41 8.82 30.57 0.27 -8.14 16 24 O -0.55 -9.46 17.17 5.34 0.09 -9.37 16 25 C -0.08 -1.13 9.58 -39.24 -0.38 -1.51 16 26 C -0.07 -1.16 9.58 -39.24 -0.38 -1.54 16 27 C 0.08 1.37 2.70 -66.33 -0.18 1.19 16 28 H 0.09 1.31 6.15 -51.93 -0.32 0.99 16 29 C 0.17 3.50 3.12 -3.71 -0.01 3.49 16 30 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.02 0.41 6.51 -51.93 -0.34 0.07 16 32 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.86 8.08 -51.94 -0.42 0.44 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.07 1.17 7.16 -51.93 -0.37 0.80 16 36 H 0.07 1.04 8.09 -51.93 -0.42 0.62 16 37 H 0.18 2.92 1.48 -60.53 -0.09 2.83 16 38 H 0.13 1.44 6.39 -52.48 -0.34 1.10 16 39 H 0.40 3.18 6.85 -40.82 -0.28 2.90 16 40 H 0.40 3.27 8.93 -40.82 -0.36 2.90 16 41 H 0.14 1.91 7.64 -52.49 -0.40 1.51 16 42 H 0.14 2.08 7.65 -52.49 -0.40 1.68 16 43 H 0.06 1.36 6.56 -51.93 -0.34 1.02 16 44 H 0.06 1.42 6.15 -51.93 -0.32 1.10 16 LS Contribution 346.31 15.07 5.22 5.22 Total: -1.00 -33.34 346.31 -8.91 -42.25 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.21 Total: 8.57 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -3.83 Total: 6.06 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.25 Total: -57.52 kcal Atomic # 8 Polarization: -20.95 SS G_CDS: 0.18 Total: -20.77 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.34 -8.91 -42.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001076559298.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.407 kcal (2) G-P(sol) polarization free energy of solvation -33.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.251 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds